FvH4_7g13540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009715
Physical Location & Seq
Forward (+)
12137084 .. 12140656
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13540.t1

Sequence Viewer

Length: 834 bp
ATGTTTCTGGGTCATACAGATGGTCTTTCTGAATCTCGTTCATCAAGGGATCAGCTACTTCCTTATGCTGAATCTGATGATGACACTGCAGACAGTTCTGAGCCGATACTGTTCTCAGCCTCCTTTGAAGAGCTTGCCGACAATATCGTTAAGTATGACACTGTTATTTGGCTTTCAATATCACTGATGCTGGTTTTAGCTTGGGGAGTTGGCATCATTATGCTGTTATATCTACCTTTTAAGAGATATATTCTCCAGAAGGACATCTCCTCTCGAAAGCTATATGTTACACCTAGTGAAATAGTCTACAAGGTTTCAAGACCTTCTTATGTACCCTTCTTGGGCATCACCACAATTGAGAGGCATGTGCCCCTTTCCCGGGTAATTGACATCATTATTGAACAAGGTTGCTTGCAGTCAAGATATGGGATCCATACCTTTCGAATTGAAAGTATAGCACGTGGCAAAGCTGCAGCTGTTGATGAACTACAGGTTCAAGGGGTTTCTAACCCTAGTGATTTGAGGAAGGTCATCATAACAGAAGCTTCAAAAGTTATACAAGACAGCGGTGTAAGTTGGAAGCCTAGTGCTGTCACTGCAGAGGGGGAAAACATGGCTCGTACTGCATCCTTGACTGAACCACCAATTCTTAGATCACCAGCTAAAAGTGTAAAGATGTCAGCTTCACCACGCTATGCTTCAATAGAACGCAGAAGCATACTACCTAGTGAATTGTTGCTTAATAGAATTGAAGAAGTCAATAGATCTGTAAAGAAAATCGAATTCTTAATAGAGAAGTCTCAAACTCAACCTGAGTTAGAGCAGATAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

31.03

Weight (kDa)

5.78

Isoelectric Point (pI)

74.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 87 - 186 8.6e-47 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 1 cut(s) 567
AclWI GGATC 3 cut(s) 57, 424, 437
AcsI RAATTY 1 cut(s) 782
AcvI CACGTG 1 cut(s) 461
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 2 cut(s) 333, 622
AfiI CCNNNNNNNGG 3 cut(s) 341, 378, 379
AgsI TTSAA 9 cut(s) 128, 177, 318, 401, 449, 497, 549, 702, 752
AluBI AGCT 9 cut(s) 55, 133, 200, 280, 470, 476, 545, 662, 683
AluI AGCT 9 cut(s) 55, 133, 200, 280, 470, 476, 545, 662, 683
Alw26I GTCTC 1 cut(s) 804
AlwI GGATC 3 cut(s) 57, 424, 437
Ama87I CYCGRG 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 470, 473
ApoI RAATTY 1 cut(s) 782
AsuC2I CCSGG 2 cut(s) 379, 380
AsuHPI GGTGA 3 cut(s) 340, 648, 678
AsuII TTCGAA 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 372
BamHI GGATCC 1 cut(s) 429
BbrPI CACGTG 1 cut(s) 461
BbvI GCAGC 2 cut(s) 457, 485
BccI CCATC 1 cut(s) 14
BcnI CCSGG 2 cut(s) 379, 380
BcoDI GTCTC 1 cut(s) 804
BfaI CTAG 4 cut(s) 294, 513, 585, 726
BfmI CTRYAG 4 cut(s) 87, 471, 488, 597
BglII AGATCT 1 cut(s) 764
BisI GCNGC 2 cut(s) 471, 474
BlsI GCNGC 2 cut(s) 472, 475
Bme1390I CCNGG 2 cut(s) 379, 380
BmeT110I CYCGRG 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 431
BmrFI CCNGG 2 cut(s) 379, 380
BmsI GCATC 4 cut(s) 177, 222, 354, 635
BpmI CTGGAG 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 442
BpuMI CCSGG 2 cut(s) 379, 380
BsaAI YACGTR 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 378, 379
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 626
BseLI CCNNNNNNNGG 3 cut(s) 341, 378, 379
BseMII CTCAG 3 cut(s) 90, 129, 804
BseRI GAGGAG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 2 cut(s) 457, 485
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 379
BslI CCNNNNNNNGG 3 cut(s) 341, 378, 379
BsmAI GTCTC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 378
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 4 cut(s) 49, 429, 653, 764
BspACI CCGC 1 cut(s) 567
BspCNI CTCAG 3 cut(s) 91, 128, 805
BspLI GGNNCC 1 cut(s) 431
BspMAI CTGCAG 3 cut(s) 91, 475, 601
BspPI GGATC 3 cut(s) 57, 424, 437
BspQI GCTCTTC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 4 cut(s) 49, 429, 653, 764
Bst4CI ACNGT 3 cut(s) 95, 111, 163
Bst6I CTCTTC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 135, 413
BstDEI CTNAG 4 cut(s) 99, 115, 650, 813
BstF5I GGATG 1 cut(s) 626
BstKTI GATC 4 cut(s) 52, 432, 656, 767
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 4 cut(s) 49, 429, 653, 764
BstMWI GCNNNNNNNGC 2 cut(s) 596, 623
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 377, 378
BstSFI CTRYAG 4 cut(s) 87, 471, 488, 597
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 457, 485
BstX2I RGATCY 2 cut(s) 429, 764
BstYI RGATCY 2 cut(s) 429, 764
BtsCI GGATG 1 cut(s) 626
BtsI GCAGTG 2 cut(s) 84, 594
BtsIMutI CAGTG 4 cut(s) 84, 159, 182, 594
Cac8I GCNNGC 2 cut(s) 135, 413
Cfr9I CCCGGG 1 cut(s) 378
Csp6I GTAC 2 cut(s) 332, 621
CviAII CATG 2 cut(s) 365, 613
CviQI GTAC 2 cut(s) 332, 621
DdeI CTNAG 4 cut(s) 99, 115, 650, 813
DpnI GATC 4 cut(s) 51, 431, 655, 766
DpnII GATC 4 cut(s) 49, 429, 653, 764
DraIII CACNNNGTG 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco72I CACGTG 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 782
FaeI CATG 2 cut(s) 368, 616
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FatI CATG 2 cut(s) 364, 612
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 471, 474
FokI GGATG 1 cut(s) 613
Fsp4HI GCNGC 2 cut(s) 471, 474
FspBI CTAG 4 cut(s) 294, 513, 585, 726
GluI GCNGC 2 cut(s) 471, 474
GsuI CTGGAG 1 cut(s) 239
HapII CCGG 1 cut(s) 379
Hin1II CATG 2 cut(s) 368, 616
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 2 cut(s) 32, 71
HpaII CCGG 1 cut(s) 379
HphI GGTGA 3 cut(s) 340, 648, 678
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 31, 76, 100
Hpy188III TCNNGA 4 cut(s) 256, 273, 318, 420
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 4 cut(s) 253, 333, 346, 520
HpyCH4III ACNGT 3 cut(s) 95, 111, 163
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 89, 415, 473, 599, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 623
HpyF3I CTNAG 4 cut(s) 99, 115, 650, 813
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 2 cut(s) 368, 616
Kzo9I GATC 4 cut(s) 49, 429, 653, 764
LguI GCTCTTC 1 cut(s) 123
LpnPI CCDG 6 cut(s) 176, 269, 392, 476, 672, 825
Lsp1109I GCAGC 2 cut(s) 457, 485
LweI GCATC 4 cut(s) 177, 222, 354, 635
MaeI CTAG 4 cut(s) 294, 513, 585, 726
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 286, 592
MalI GATC 4 cut(s) 51, 431, 655, 766
MboI GATC 4 cut(s) 49, 429, 653, 764
MboII GAAGA 2 cut(s) 140, 764
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 2 cut(s) 429, 764
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 8 cut(s) 354, 384, 444, 645, 731, 747, 782, 829
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 5 cut(s) 130, 280, 354, 516, 595
MseI TTAA 4 cut(s) 150, 240, 741, 788
MslI CAYNNNNRTG 2 cut(s) 18, 218
MspA1I CMGCKG 2 cut(s) 476, 567
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 2 cut(s) 379, 380
MunI CAATTG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 596, 623
NciI CCSGG 2 cut(s) 379, 380
NdeII GATC 4 cut(s) 49, 429, 653, 764
NlaIII CATG 2 cut(s) 368, 616
NlaIV GGNNCC 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 1 cut(s) 368
NspV TTCGAA 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 32, 71
PkrI GCNGC 2 cut(s) 472, 475
PmaCI CACGTG 1 cut(s) 461
PmlI CACGTG 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 461
PspCI CACGTG 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 431
PstI CTGCAG 3 cut(s) 91, 475, 601
PsuI RGATCY 2 cut(s) 429, 764
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 2 cut(s) 333, 622
RsaNI GTAC 2 cut(s) 332, 621
RseI CAYNNNNRTG 2 cut(s) 18, 218
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 4 cut(s) 150, 240, 741, 788
SatI GCNGC 2 cut(s) 471, 474
Sau3AI GATC 4 cut(s) 49, 429, 653, 764
ScrFI CCNGG 2 cut(s) 379, 380
SduI GDGCHC 1 cut(s) 372
SfaNI GCATC 4 cut(s) 177, 222, 354, 635
SfcI CTRYAG 4 cut(s) 87, 471, 488, 597
SfuI TTCGAA 1 cut(s) 442
SmaI CCCGGG 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 18, 218
Sse9I AATT 8 cut(s) 354, 384, 444, 645, 731, 747, 782, 829
SsiI CCGC 1 cut(s) 567
SspMI CTAG 4 cut(s) 294, 513, 585, 726
StyD4I CCNGG 2 cut(s) 377, 378
TaaI ACNGT 3 cut(s) 95, 111, 163
TaiI ACGT 1 cut(s) 463
TaqI TCGA 3 cut(s) 274, 442, 780
TasI AATT 8 cut(s) 354, 384, 444, 645, 731, 747, 782, 829
TfiI GAWTC 2 cut(s) 32, 71
Tru1I TTAA 4 cut(s) 150, 240, 741, 788
Tru9I TTAA 4 cut(s) 150, 240, 741, 788
TscAI CASTG 4 cut(s) 91, 166, 189, 601
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 2 cut(s) 470, 473
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 30, 498
TspMI CCCGGG 1 cut(s) 378
TspRI CASTG 4 cut(s) 91, 166, 189, 601
XapI RAATTY 1 cut(s) 782
XceI RCATGY 1 cut(s) 368
XmaI CCCGGG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 4 cut(s) 294, 513, 585, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.