Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009715

Physical Location & Seq

Genomic Coordinates Reverse (-)

8294043 .. 8296074

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07370.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGTCATGCAGATGGTATATCTGAGCCTCGGTCATCCAAGGATCGGTTACTTCCTTATGCTGAATCATCCGAGTTAGATGATGTTGACACTGCAGACTCTTCTGAGCAAATTCTTCACACGGCCTCCTTCGAAGAGCTTGCAAAGAATATCGTTAAGTATGACACTGTTATATGGCTTTCTATATCGCTGTTGCTGGTTTTAGCTTGGGGAGTTGGCATCATCATGCTTTTATATCTGCCTTTTAAGAGATATGTTCTTCAGAAGGATGTTTCCTCACGAAAACTATATGTTACGCGAAGTGAAATAGTTTACAAGGTTTCGAGGCCATCTTTCATACCCTTCTGGGGCATCACTACAATTGAGAAGCATGTACCCCTTTCCCTGGTGATTGACATCATTATAGAACAAGGTTGCTTGCAGTCAAGGTATGGAATTCATACCTTTAGAATTGAAAGTATAGCATGTGGAAAAGCCGCAGCTGTAGATGAACTACAGGTTCAAGGGGTTTCTAACCCTAGTGGTTTGAGGAAGGTAATCATAACAGAAGCTTCAAAAGCCATACGAGAAAGTGCTGTAAGTTGGAAGCCTACTGCCACCACTGCTGAAGGGGAAAGCGTGGCTCGTACTGGATCATTGACCGAGGGACCTCTTGTTTTGAGATCGCCATCTAAAAGCTTAAAGATGTCAGCATCACCACGCTATGCTTCAATAGAACGCAGAGGCGTAGTACCTGGGGATTTGCTACTTAATAAACTTGACGAAGTCAATAAATCTGTGAAGAGAATCGAGTTGTTAATTGAGAAGTCCCGTGCACACCCTGAGTCCTCAACTGAAATGAAGTCAGATGTACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.54

Weight (kDa)

8.4

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13540 FvH4_7g13540 FvH4_7g13540
malus_domestica	MD01G1048500.v1.1
prunus_persica	Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1
pyrus_communis	pycom01g07370
rosa_chinensis	RchiOBHm_Chr1g0353101
rosa_laevigata	RLG00000028290
rosa_multiflora	Rmu_sc0001207.1_g000083
rosa_roxburghii	Rroxscaffold_4G00302060
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247400 Rh1CG230900 Rh1DG243300
rosa_wichuraiana	Rw0G018100 Rw1G021420 Rw1G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	298
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	2 cut(s)	51, 640
AcsI	RAATTY	2 cut(s)	111, 435
AcuI	CTGAAG	2 cut(s)	245, 627
AfaI	GTAC	4 cut(s)	375, 628, 732, 852
AfiI	CCNNNNNNNGG	3 cut(s)	45, 347, 385
AgsI	TTSAA	4 cut(s)	455, 503, 555, 711
AjnI	CCWGG	2 cut(s)	384, 733
AluBI	AGCT	5 cut(s)	139, 206, 482, 551, 678
AluI	AGCT	5 cut(s)	139, 206, 482, 551, 678
Alw21I	GWGCWC	1 cut(s)	817
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	2 cut(s)	51, 640
AoxI	GGCC	2 cut(s)	123, 326
ApaLI	GTGCAC	1 cut(s)	813
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	2 cut(s)	111, 435
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	400, 687
AsuII	TTCGAA	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	817
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	3 cut(s)	8, 337, 676
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	2 cut(s)	386, 735
BfaI	CTAG	2 cut(s)	519, 856
BfmI	CTRYAG	3 cut(s)	93, 483, 494
BisI	GCNGC	2 cut(s)	477, 480
BlsI	GCNGC	2 cut(s)	478, 481
Bme1390I	CCNGG	2 cut(s)	386, 735
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	2 cut(s)	386, 735
BmsI	GCATC	3 cut(s)	228, 360, 701
Bpu14I	TTCGAA	1 cut(s)	132
BsaBI	GATNNNNATC	2 cut(s)	395, 667
BsaJI	CCNNGG	5 cut(s)	29, 39, 384, 642, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 347, 385
Bse1I	ACTGG	1 cut(s)	634
Bse8I	GATNNNNATC	2 cut(s)	395, 667
BseBI	CCWGG	2 cut(s)	386, 735
BseDI	CCNNGG	5 cut(s)	29, 39, 384, 642, 734
BseGI	GGATG	3 cut(s)	35, 68, 274
BseJI	GATNNNNATC	2 cut(s)	395, 667
BseLI	CCNNNNNNNGG	3 cut(s)	45, 347, 385
BseMII	CTCAG	3 cut(s)	15, 96, 813
BseNI	ACTGG	1 cut(s)	634
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	125, 328
BsiHKAI	GWGCWC	1 cut(s)	817
BslFI	GGGAC	2 cut(s)	660, 793
BslI	CCNNNNNNNGG	3 cut(s)	45, 347, 385
BsmFI	GGGAC	2 cut(s)	660, 793
BsnI	GGCC	2 cut(s)	125, 328
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp143I	GATC	3 cut(s)	43, 632, 662
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	125, 328
BspCNI	CTCAG	3 cut(s)	16, 97, 814
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	648
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	2 cut(s)	51, 640
BspQI	GCTCTTC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	5 cut(s)	29, 39, 384, 642, 734
BssMI	GATC	3 cut(s)	43, 632, 662
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	386, 735
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	3 cut(s)	106, 129, 776
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	141, 419
BstDEI	CTNAG	3 cut(s)	24, 105, 822
BstF5I	GGATG	3 cut(s)	35, 68, 274
BstFNI	CGCG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	46, 635, 665
BstMBI	GATC	3 cut(s)	43, 632, 662
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 602
BstNI	CCWGG	2 cut(s)	386, 735
BstNSI	RCATGY	2 cut(s)	374, 468
BstSCI	CCNGG	2 cut(s)	384, 733
BstSFI	CTRYAG	3 cut(s)	93, 483, 494
BstSLI	GKGCMC	1 cut(s)	817
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	125, 328
BtsCI	GGATG	3 cut(s)	35, 68, 274
BtsI	GCAGTG	2 cut(s)	90, 600
BtsIMutI	CAGTG	3 cut(s)	90, 165, 600
Cac8I	GCNNGC	2 cut(s)	141, 419
Cfr13I	GGNCC	1 cut(s)	647
Csp6I	GTAC	4 cut(s)	374, 627, 731, 851
CviAII	CATG	4 cut(s)	8, 226, 371, 465
CviQI	GTAC	4 cut(s)	374, 627, 731, 851
DdeI	CTNAG	3 cut(s)	24, 105, 822
DpnI	GATC	3 cut(s)	45, 634, 664
DpnII	GATC	3 cut(s)	43, 632, 662
Eam1104I	CTCTTC	3 cut(s)	106, 129, 776
EarI	CTCTTC	3 cut(s)	106, 129, 776
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	245, 627
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	384, 733
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	4 cut(s)	11, 229, 374, 468
FaqI	GGGAC	2 cut(s)	660, 793
FatI	CATG	4 cut(s)	7, 225, 370, 464
Fnu4HI	GCNGC	2 cut(s)	477, 480
FokI	GGATG	3 cut(s)	22, 55, 281
Fsp4HI	GCNGC	2 cut(s)	477, 480
FspBI	CTAG	2 cut(s)	519, 856
GluI	GCNGC	2 cut(s)	477, 480
HaeIII	GGCC	2 cut(s)	125, 328
Hin1II	CATG	4 cut(s)	11, 229, 374, 468
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	2 cut(s)	549, 676
HinfI	GANTC	4 cut(s)	65, 98, 786, 824
HphI	GGTGA	2 cut(s)	400, 687
Hpy166II	GTNNAC	3 cut(s)	88, 313, 815
Hpy188I	TCNGA	5 cut(s)	25, 73, 106, 264, 847
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	3 cut(s)	88, 313, 815
HpyAV	CCTTC	5 cut(s)	139, 259, 352, 526, 602
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	5 cut(s)	11, 95, 143, 421, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 602
HpyF3I	CTNAG	3 cut(s)	24, 105, 822
Hsp92II	CATG	4 cut(s)	11, 229, 374, 468
Kzo9I	GATC	3 cut(s)	43, 632, 662
LguI	GCTCTTC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	182, 331, 371, 398, 482, 615, 720, 747, 834
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	3 cut(s)	228, 360, 701
MaeI	CTAG	2 cut(s)	519, 856
MaeIII	GTNAC	2 cut(s)	48, 292
MalI	GATC	3 cut(s)	45, 634, 664
MboI	GATC	3 cut(s)	43, 632, 662
MboII	GAAGA	5 cut(s)	93, 107, 146, 251, 793
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	817
MluCI	AATT	5 cut(s)	111, 360, 435, 450, 798
MlyI	GAGTC	2 cut(s)	92, 833
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	9 cut(s)	39, 136, 286, 318, 522, 637, 660, 716, 838
MseI	TTAA	5 cut(s)	156, 246, 680, 750, 797
MslI	CAYNNNNRTG	2 cut(s)	12, 224
MspA1I	CMGCKG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	386, 735
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	2 cut(s)	386, 735
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	557, 602
NdeII	GATC	3 cut(s)	43, 632, 662
NlaIII	CATG	4 cut(s)	11, 229, 374, 468
NlaIV	GGNNCC	1 cut(s)	648
NspI	RCATGY	2 cut(s)	374, 468
NspV	TTCGAA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	65, 786
PflFI	GACNNNGTC	1 cut(s)	764
PkrI	GCNGC	2 cut(s)	478, 481
PleI	GAGTC	2 cut(s)	92, 832
PpsI	GAGTC	2 cut(s)	92, 832
PpuMI	RGGWCCY	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	2 cut(s)	384, 733
PspGI	CCWGG	2 cut(s)	384, 733
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	1 cut(s)	647
PspPPI	RGGWCCY	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	764
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	4 cut(s)	375, 628, 732, 852
RsaNI	GTAC	4 cut(s)	374, 627, 731, 851
RseI	CAYNNNNRTG	2 cut(s)	12, 224
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	5 cut(s)	156, 246, 680, 750, 797
SatI	GCNGC	2 cut(s)	477, 480
Sau3AI	GATC	3 cut(s)	43, 632, 662
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	2 cut(s)	92, 833
ScrFI	CCNGG	2 cut(s)	386, 735
SduI	GDGCHC	1 cut(s)	817
SfaNI	GCATC	3 cut(s)	228, 360, 701
SfcI	CTRYAG	3 cut(s)	93, 483, 494
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	2 cut(s)	12, 224
Sse9I	AATT	5 cut(s)	111, 360, 435, 450, 798
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	519, 856
StyD4I	CCNGG	2 cut(s)	384, 733
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	3 cut(s)	132, 323, 789
TaqII	GACCGA	2 cut(s)	21, 656
TasI	AATT	5 cut(s)	111, 360, 435, 450, 798
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	65, 786
Tru1I	TTAA	5 cut(s)	156, 246, 680, 750, 797
Tru9I	TTAA	5 cut(s)	156, 246, 680, 750, 797
TscAI	CASTG	3 cut(s)	97, 172, 607
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	4 cut(s)	325, 428, 504, 854
TspRI	CASTG	3 cut(s)	97, 172, 607
Tth111I	GACNNNGTC	1 cut(s)	764
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	111, 435
XceI	RCATGY	2 cut(s)	374, 468
XspI	CTAG	2 cut(s)	519, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.