Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001207.1

Orthogroup ID

OG0009715

Physical Location & Seq

Genomic Coordinates Reverse (-)

351097 .. 355140

Gene Structure 4044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001207.1_g000083.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggaatacagacttacagagggaataaacgatacagtcgtctgttttgacacggctctgaaaaccgaaagcatttccagttttgagcttggagagatgttgatgggtcatacagatggtctttctgaatctcggtcatcgagggatcagctacttccttatgctgaatctgacttaggggatgatgacactgcagactgttctgagccaatactgtactcagcctcctttgaagagcttgccaaaaatatcgttaagtatgacaccgttatatggctctcaatatcattgatgctggttttagcttggggagttggcatcatcatgctgttatatctaccctttaagagatatattctccagaaggacatctcctcccgcaagctatatgttacacctagtgaaatagtctacaaggtgtcaaggccttcttatgtaccctttttgggcatcactacaattgagaggcatgtgcccctttccctggtgattgacatcattattgaacaaggttgtttgcagtcaaaatatggacttcatacctttcgaattgaaagtatagcatgtggaaaagctgcagctgttgatgaactacaggttcaaggggtttctaaccctagtgatttgaggaaggtcatcataacagaagcttcaaaagttatacaagatagcggtataagttggaagcctactactgtcactgcagaaggggaaagcatggctcgcacaccatccgtgactgaagcaccaattctgagatcaccagctaaaagcgtaaagatggcagcttcaccacgctatgcttcaatagaacgcagaagcatactacctagtgaattgctgcttaatagacttgaagaagtcaataaatctgtaaagaaaatcgagtttttaatagagaagtcacatactcaacctgagttagagcggctgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.81

Weight (kDa)

5.25

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13540 FvH4_7g13540 FvH4_7g13540
malus_domestica	MD01G1048500.v1.1
prunus_persica	Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1 Prupe.2G159500_v2.0.a1
pyrus_communis	pycom01g07370
rosa_chinensis	RchiOBHm_Chr1g0353101
rosa_laevigata	RLG00000028290
rosa_multiflora	Rmu_sc0001207.1_g000083
rosa_roxburghii	Rroxscaffold_4G00302060
rosa_rugosa	Rorug01G0233600 Rorug01G0233600
rosa_samantha	Rh1AG247400 Rh1CG230900 Rh1DG243300
rosa_wichuraiana	Rw0G018100 Rw1G021420 Rw1G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	928
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	3 cut(s)	379, 672, 928
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	762
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	218, 438
AfiI	CCNNNNNNNGG	3 cut(s)	273, 446, 484
AgsI	TTSAA	7 cut(s)	233, 506, 554, 602, 654, 807, 857
AjnI	CCWGG	1 cut(s)	483
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	4 cut(s)	575, 578, 785, 841
AsuHPI	GGTGA	3 cut(s)	499, 753, 783
AsuII	TTCGAA	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	477
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BbvI	GCAGC	4 cut(s)	562, 590, 797, 828
BccI	CCATC	4 cut(s)	97, 110, 739, 775
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	485
BfaI	CTAG	3 cut(s)	399, 618, 831
BfmI	CTRYAG	4 cut(s)	192, 576, 593, 702
BisI	GCNGC	5 cut(s)	576, 579, 786, 842, 929
BlsI	GCNGC	5 cut(s)	577, 580, 787, 843, 930
Bme1390I	CCNGG	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	3 cut(s)	282, 327, 459
BpmI	CTGGAG	1 cut(s)	344
Bpu14I	TTCGAA	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	483
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 359, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 446, 484
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	187, 731
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	3 cut(s)	273, 446, 484
BseMII	CTCAG	4 cut(s)	195, 234, 746, 909
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	364
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	562, 590, 797, 828
BshFI	GGCC	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	273, 446, 484
BsnI	GGCC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	145, 758
BspACI	CCGC	3 cut(s)	379, 672, 928
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	4 cut(s)	196, 233, 747, 910
BspMAI	CTGCAG	3 cut(s)	196, 580, 706
BspPI	GGATC	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	547
BsrBI	CCGCTC	1 cut(s)	928
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	145, 758
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	5 cut(s)	37, 200, 216, 268, 697
Bst6I	CTCTTC	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	3 cut(s)	240, 383, 724
BstDEI	CTNAG	5 cut(s)	175, 204, 220, 755, 918
BstF5I	GGATG	2 cut(s)	187, 731
BstKTI	GATC	2 cut(s)	148, 761
BstMBI	GATC	2 cut(s)	145, 758
BstMWI	GCNNNNNNNGC	1 cut(s)	723
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	2 cut(s)	473, 567
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	4 cut(s)	192, 576, 593, 702
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	562, 590, 797, 828
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	187, 731
BtsI	GCAGTG	2 cut(s)	189, 699
BtsIMutI	CAGTG	2 cut(s)	189, 699
Cac8I	GCNNGC	3 cut(s)	240, 383, 724
Csp6I	GTAC	2 cut(s)	217, 437
CviAII	CATG	4 cut(s)	325, 470, 564, 718
CviQI	GTAC	2 cut(s)	217, 437
DdeI	CTNAG	5 cut(s)	175, 204, 220, 755, 918
DpnI	GATC	2 cut(s)	147, 760
DpnII	GATC	2 cut(s)	145, 758
DraIII	CACNNNGTG	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	762
EcoRII	CCWGG	1 cut(s)	483
FaeI	CATG	4 cut(s)	328, 473, 567, 721
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FatI	CATG	4 cut(s)	324, 469, 563, 717
FauI	CCCGC	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	5 cut(s)	576, 579, 786, 842, 929
FokI	GGATG	2 cut(s)	194, 718
Fsp4HI	GCNGC	5 cut(s)	576, 579, 786, 842, 929
FspBI	CTAG	3 cut(s)	399, 618, 831
GluI	GCNGC	5 cut(s)	576, 579, 786, 842, 929
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	427
Hin1II	CATG	4 cut(s)	328, 473, 567, 721
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	2 cut(s)	128, 167
HphI	GGTGA	3 cut(s)	499, 753, 783
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	5 cut(s)	60, 127, 172, 205, 756
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	4 cut(s)	358, 438, 625, 701
HpyCH4III	ACNGT	5 cut(s)	37, 200, 216, 268, 697
HpyCH4V	TGCA	4 cut(s)	194, 520, 578, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	723
HpyF3I	CTNAG	5 cut(s)	175, 204, 220, 755, 918
Hsp92II	CATG	4 cut(s)	328, 473, 567, 721
Kzo9I	GATC	2 cut(s)	145, 758
LguI	GCTCTTC	1 cut(s)	228
LpnPI	CCDG	8 cut(s)	91, 281, 374, 470, 497, 581, 777, 930
Lsp1109I	GCAGC	4 cut(s)	562, 590, 797, 828
LweI	GCATC	3 cut(s)	282, 327, 459
MaeI	CTAG	3 cut(s)	399, 618, 831
MaeIII	GTNAC	4 cut(s)	391, 697, 736, 903
MalI	GATC	2 cut(s)	147, 760
MbiI	CCGCTC	1 cut(s)	928
MboI	GATC	2 cut(s)	145, 758
MboII	GAAGA	2 cut(s)	245, 869
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	5 cut(s)	459, 549, 750, 836, 934
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	6 cut(s)	13, 135, 235, 385, 459, 621
MseI	TTAA	4 cut(s)	255, 345, 846, 893
MslI	CAYNNNNRTG	2 cut(s)	114, 323
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	723
NdeII	GATC	2 cut(s)	145, 758
NlaIII	CATG	4 cut(s)	328, 473, 567, 721
NmuCI	GTSAC	3 cut(s)	697, 736, 903
NspI	RCATGY	2 cut(s)	473, 567
NspV	TTCGAA	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	128, 167
PkrI	GCNGC	5 cut(s)	577, 580, 787, 843, 930
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PstI	CTGCAG	3 cut(s)	196, 580, 706
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	218, 438
RsaNI	GTAC	2 cut(s)	217, 437
RseI	CAYNNNNRTG	2 cut(s)	114, 323
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	255, 345, 846, 893
SatI	GCNGC	5 cut(s)	576, 579, 786, 842, 929
Sau3AI	GATC	2 cut(s)	145, 758
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	3 cut(s)	282, 327, 459
SfcI	CTRYAG	4 cut(s)	192, 576, 593, 702
SfuI	TTCGAA	1 cut(s)	547
SmiMI	CAYNNNNRTG	2 cut(s)	114, 323
Sse9I	AATT	5 cut(s)	459, 549, 750, 836, 934
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	3 cut(s)	379, 672, 928
SspMI	CTAG	3 cut(s)	399, 618, 831
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	5 cut(s)	37, 200, 216, 268, 697
TaqI	TCGA	3 cut(s)	140, 547, 885
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	5 cut(s)	459, 549, 750, 836, 934
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	931
TfiI	GAWTC	2 cut(s)	128, 167
Tru1I	TTAA	4 cut(s)	255, 345, 846, 893
Tru9I	TTAA	4 cut(s)	255, 345, 846, 893
TscAI	CASTG	2 cut(s)	196, 706
TseFI	GTSAC	3 cut(s)	697, 736, 903
TseI	GCWGC	4 cut(s)	575, 578, 785, 841
Tsp45I	GTSAC	3 cut(s)	697, 736, 903
TspDTI	ATGAA	2 cut(s)	527, 603
TspGWI	ACGGA	1 cut(s)	724
TspRI	CASTG	2 cut(s)	196, 706
XceI	RCATGY	2 cut(s)	473, 567
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	3 cut(s)	399, 618, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.