Rh1AG247400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009715
Physical Location & Seq
Forward (+)
46090689 .. 46094336
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG247400.1

Sequence Viewer

Length: 648 bp
ATGTTGATGGGTCATACAGATGGTCTTTCTGAATCTCGGTCATCGAGGGATCAGCTACTTCCTTATGCTGAATCTGACTTAGGGGATGATGACACTGCAGACTGTTCTGAGCCAATACTGTACTCAGCCTCCTTTGAAGAGCTTGCCAAAAATATCGTTAAGTATGACACCGTTATATGGCTTTCAATATCATTGATGCTGGTTTTAGCTTGGGGAGTTGGCATCATCATGCTGTTATATCTACCCTTTAAGAGATATATTCTCCAGAAGGACATCTCCTCCCGCAAGCTATATGTTACACCTAGTGAAATAGTCTACAAGGTGTCAAGGCCTTCTTATGTACCCTTTTTGGGCATCACTACAATTGAGAGGCATGTGCCCCTTTCCCTGGTGATTGACATCATTATTGAACAAGGTTGTTTGCAGTCAAAATATGGACTTCATACCTTTCGAATTGAAAGTATAGCATGTGGAAAAGCTGCAGCTGTTGATGAACTACAGGTTCAAGGGGTTTCTAACCCTAGTGATTTGAGGAAGGTGAATAAAACTGTCTCTTTTTTTTTTCATTTGAATCAGAAAGCATGCTCATTAAAGAAAATTTCTAACGTTAGATGCATATTGGGTGTTCATTTTTTTATTGGCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.12

Weight (kDa)

6.52

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 90 - 182 4e-44 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AciI CCGC 1 cut(s) 283
AclI AACGTT 1 cut(s) 606
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 597
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 122, 342
AfiI CCNNNNNNNGG 3 cut(s) 177, 350, 388
AgsI TTSAA 6 cut(s) 137, 186, 410, 458, 506, 571
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 6 cut(s) 55, 142, 209, 289, 479, 485
AluI AGCT 6 cut(s) 55, 142, 209, 289, 479, 485
Alw26I GTCTC 1 cut(s) 556
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 479, 482
ApoI RAATTY 1 cut(s) 597
AsuHPI GGTGA 2 cut(s) 403, 550
AsuII TTCGAA 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 466, 494
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 2 cut(s) 303, 522
BfmI CTRYAG 3 cut(s) 96, 480, 497
BisI GCNGC 2 cut(s) 480, 483
BlsI GCNGC 2 cut(s) 481, 484
Bme1390I CCNGG 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 4 cut(s) 186, 231, 363, 602
BpmI CTGGAG 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 387
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 350, 388
Bse8I GATNNNNATC 1 cut(s) 398
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 91
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 177, 350, 388
BseMII CTCAG 2 cut(s) 99, 138
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 2 cut(s) 466, 494
BshFI GGCC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 177, 350, 388
BsmAI GTCTC 1 cut(s) 556
BsnI GGCC 1 cut(s) 331
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 283
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 100, 137
BspMAI CTGCAG 2 cut(s) 100, 484
BspPI GGATC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 4 cut(s) 104, 120, 172, 550
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 3 cut(s) 144, 287, 583
BstDEI CTNAG 3 cut(s) 79, 108, 124
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 3 cut(s) 377, 471, 585
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 3 cut(s) 96, 480, 497
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 466, 494
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 144, 287, 583
Csp6I GTAC 2 cut(s) 121, 341
CviAII CATG 4 cut(s) 229, 374, 468, 582
CviQI GTAC 2 cut(s) 121, 341
DdeI CTNAG 3 cut(s) 79, 108, 124
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 387
EcoT22I ATGCAT 1 cut(s) 617
FaeI CATG 4 cut(s) 232, 377, 471, 585
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FatI CATG 4 cut(s) 228, 373, 467, 581
FauI CCCGC 1 cut(s) 290
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 480, 483
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 480, 483
FspBI CTAG 2 cut(s) 303, 522
GluI GCNGC 2 cut(s) 480, 483
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 4 cut(s) 232, 377, 471, 585
HinfI GANTC 3 cut(s) 32, 71, 571
HphI GGTGA 2 cut(s) 403, 550
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 31, 76, 109, 576
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 3 cut(s) 262, 342, 529
HpyCH4III ACNGT 4 cut(s) 104, 120, 172, 550
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 4 cut(s) 98, 424, 482, 615
HpyF3I CTNAG 3 cut(s) 79, 108, 124
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 4 cut(s) 232, 377, 471, 585
Kzo9I GATC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 5 cut(s) 185, 278, 374, 401, 485
Lsp1109I GCAGC 2 cut(s) 466, 494
LweI GCATC 4 cut(s) 186, 231, 363, 602
MaeI CTAG 2 cut(s) 303, 522
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 149
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 363, 453, 597
MnlI CCTC 5 cut(s) 39, 139, 289, 363, 525
Mph1103I ATGCAT 1 cut(s) 617
MseI TTAA 3 cut(s) 159, 249, 590
MslI CAYNNNNRTG 2 cut(s) 18, 227
MspA1I CMGCKG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 389
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 389
NdeII GATC 1 cut(s) 49
NlaIII CATG 4 cut(s) 232, 377, 471, 585
NsiI ATGCAT 1 cut(s) 617
NspI RCATGY 3 cut(s) 377, 471, 585
NspV TTCGAA 1 cut(s) 451
PaeI GCATGC 1 cut(s) 585
PceI AGGCCT 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 32, 71, 571
PkrI GCNGC 2 cut(s) 481, 484
Psp1406I AACGTT 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PstI CTGCAG 2 cut(s) 100, 484
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 2 cut(s) 122, 342
RsaNI GTAC 2 cut(s) 121, 341
RseI CAYNNNNRTG 2 cut(s) 18, 227
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 3 cut(s) 159, 249, 590
SatI GCNGC 2 cut(s) 480, 483
Sau3AI GATC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 4 cut(s) 186, 231, 363, 602
SfcI CTRYAG 3 cut(s) 96, 480, 497
SfuI TTCGAA 1 cut(s) 451
SmiMI CAYNNNNRTG 2 cut(s) 18, 227
SphI GCATGC 1 cut(s) 585
Sse9I AATT 3 cut(s) 363, 453, 597
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 1 cut(s) 283
SspMI CTAG 2 cut(s) 303, 522
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 4 cut(s) 104, 120, 172, 550
TaiI ACGT 1 cut(s) 609
TaqI TCGA 2 cut(s) 44, 451
TaqII GACCGA 1 cut(s) 27
TasI AATT 3 cut(s) 363, 453, 597
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 3 cut(s) 32, 71, 571
Tru1I TTAA 3 cut(s) 159, 249, 590
Tru9I TTAA 3 cut(s) 159, 249, 590
TscAI CASTG 1 cut(s) 100
TseI GCWGC 2 cut(s) 479, 482
TspDTI ATGAA 4 cut(s) 431, 507, 554, 617
TspRI CASTG 1 cut(s) 100
XapI RAATTY 1 cut(s) 597
XceI RCATGY 3 cut(s) 377, 471, 585
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 303, 522
Zsp2I ATGCAT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.