Rh1CG230900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009715
Physical Location & Seq
Forward (+)
48575088 .. 48578735
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG230900.1

Sequence Viewer

Length: 708 bp
ATGTTGATGGGTCATACAGATGGTCTTTCTGAATCTCGGTCATCGAGGGATCAGCTACTTCCTTATGCTGAATCTGACTTAGGGGATGATGACACTGCAGACTGTTCTGAGCCAATACTGTACTCAGCCTCCTTTGAAGAGCTTGCCAAAAATATCGTTAAGTATGACACCGTTATATGGCTTTCAATATCATTGATGCTGGTTTTAGCTTGGGGAGTTGGCATCATCATGCTGTTATATCTACCCTTTAAGAGATATATTCTCCAGAAGGACATCTCCTCCCGCAAGCTATATGTTACACCTAGTGAAATAGTCTACAAGGTGTCAAGGCCTTCTTATGTACCCTTTTTGGGCATCACTACAATTGAGAGGCATGTGCCCCTTTCCCTGGTGATTGACATCATTATTGAACAAGGTTGTTTGCAGTCAAAATATGGACTTCATACCTTTCGAATTGAAAGTATAGCATGTGGAAAAGCTGCAGCTGTTGATGAACTACAGGTTCAAGGGGTTTCTAACCCTAGTGATTTGAGGAAGGTCATCATAACAGAAGCTTCAAAAGTTATACAAGACAGCGGTATAAGTTGGAAGCCTACTACTGTCACTGCAGAAGGGGAAAACATGGCTCGTACACCATCCGTGACTGAAGCACCAATTCTGAGATCACCAGCTAAAAGCATAAAGGTACAAAAGATATTCATTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.05

Weight (kDa)

5.69

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 90 - 189 6.6e-47 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AciI CCGC 2 cut(s) 283, 576
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 666
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 4 cut(s) 122, 342, 631, 687
AfiI CCNNNNNNNGG 3 cut(s) 177, 350, 388
AgsI TTSAA 6 cut(s) 137, 186, 410, 458, 506, 558
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 8 cut(s) 55, 142, 209, 289, 479, 485, 554, 671
AluI AGCT 8 cut(s) 55, 142, 209, 289, 479, 485, 554, 671
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 479, 482
AsuHPI GGTGA 2 cut(s) 403, 657
AsuII TTCGAA 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 466, 494
BccI CCATC 2 cut(s) 14, 643
BciT130I CCWGG 1 cut(s) 389
BfaI CTAG 2 cut(s) 303, 522
BfmI CTRYAG 4 cut(s) 96, 480, 497, 606
BisI GCNGC 2 cut(s) 480, 483
BlsI GCNGC 2 cut(s) 481, 484
Bme1390I CCNGG 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 3 cut(s) 186, 231, 363
BpmI CTGGAG 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 387
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 350, 388
Bse8I GATNNNNATC 1 cut(s) 398
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 91, 635
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 177, 350, 388
BseMII CTCAG 3 cut(s) 99, 138, 650
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 2 cut(s) 466, 494
BshFI GGCC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 177, 350, 388
BsnI GGCC 1 cut(s) 331
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 49, 662
BspACI CCGC 2 cut(s) 283, 576
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 3 cut(s) 100, 137, 651
BspMAI CTGCAG 3 cut(s) 100, 484, 610
BspPI GGATC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 2 cut(s) 49, 662
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 4 cut(s) 104, 120, 172, 601
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 144, 287
BstDEI CTNAG 4 cut(s) 79, 108, 124, 659
BstF5I GGATG 2 cut(s) 91, 635
BstKTI GATC 2 cut(s) 52, 665
BstMBI GATC 2 cut(s) 49, 662
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 2 cut(s) 377, 471
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 4 cut(s) 96, 480, 497, 606
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 466, 494
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 2 cut(s) 91, 635
BtsI GCAGTG 2 cut(s) 93, 603
BtsIMutI CAGTG 2 cut(s) 93, 603
Cac8I GCNNGC 2 cut(s) 144, 287
Csp6I GTAC 4 cut(s) 121, 341, 630, 686
CviAII CATG 4 cut(s) 229, 374, 468, 622
CviQI GTAC 4 cut(s) 121, 341, 630, 686
DdeI CTNAG 4 cut(s) 79, 108, 124, 659
DpnI GATC 2 cut(s) 51, 664
DpnII GATC 2 cut(s) 49, 662
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 387
FaeI CATG 4 cut(s) 232, 377, 471, 625
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FatI CATG 4 cut(s) 228, 373, 467, 621
FauI CCCGC 1 cut(s) 290
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 480, 483
FokI GGATG 2 cut(s) 98, 622
Fsp4HI GCNGC 2 cut(s) 480, 483
FspBI CTAG 2 cut(s) 303, 522
GluI GCNGC 2 cut(s) 480, 483
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 4 cut(s) 232, 377, 471, 625
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 2 cut(s) 32, 71
HphI GGTGA 2 cut(s) 403, 657
Hpy166II GTNNAC 2 cut(s) 316, 632
Hpy188I TCNGA 4 cut(s) 31, 76, 109, 660
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 2 cut(s) 316, 632
HpyAV CCTTC 4 cut(s) 262, 342, 529, 605
HpyCH4III ACNGT 4 cut(s) 104, 120, 172, 601
HpyCH4V TGCA 4 cut(s) 98, 424, 482, 608
HpyF3I CTNAG 4 cut(s) 79, 108, 124, 659
Hsp92II CATG 4 cut(s) 232, 377, 471, 625
Kzo9I GATC 2 cut(s) 49, 662
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 185, 278, 374, 401, 485, 681
Lsp1109I GCAGC 2 cut(s) 466, 494
LweI GCATC 3 cut(s) 186, 231, 363
MaeI CTAG 2 cut(s) 303, 522
MaeIII GTNAC 3 cut(s) 295, 601, 640
MalI GATC 2 cut(s) 51, 664
MboI GATC 2 cut(s) 49, 662
MboII GAAGA 1 cut(s) 149
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 363, 453, 654
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 5 cut(s) 39, 139, 289, 363, 525
MseI TTAA 3 cut(s) 159, 249, 706
MslI CAYNNNNRTG 2 cut(s) 18, 227
MspA1I CMGCKG 2 cut(s) 485, 576
MspR9I CCNGG 1 cut(s) 389
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 389
NdeII GATC 2 cut(s) 49, 662
NlaIII CATG 4 cut(s) 232, 377, 471, 625
NmuCI GTSAC 2 cut(s) 601, 640
NspI RCATGY 2 cut(s) 377, 471
NspV TTCGAA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 32, 71
PkrI GCNGC 2 cut(s) 481, 484
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PstI CTGCAG 3 cut(s) 100, 484, 610
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 122, 342, 631, 687
RsaNI GTAC 4 cut(s) 121, 341, 630, 686
RseI CAYNNNNRTG 2 cut(s) 18, 227
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 3 cut(s) 159, 249, 706
SatI GCNGC 2 cut(s) 480, 483
Sau3AI GATC 2 cut(s) 49, 662
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 3 cut(s) 186, 231, 363
SfcI CTRYAG 4 cut(s) 96, 480, 497, 606
SfuI TTCGAA 1 cut(s) 451
SmiMI CAYNNNNRTG 2 cut(s) 18, 227
Sse9I AATT 3 cut(s) 363, 453, 654
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 2 cut(s) 283, 576
SspMI CTAG 2 cut(s) 303, 522
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 4 cut(s) 104, 120, 172, 601
TaqI TCGA 2 cut(s) 44, 451
TaqII GACCGA 1 cut(s) 27
TasI AATT 3 cut(s) 363, 453, 654
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 2 cut(s) 32, 71
Tru1I TTAA 3 cut(s) 159, 249, 706
Tru9I TTAA 3 cut(s) 159, 249, 706
TscAI CASTG 2 cut(s) 100, 610
TseFI GTSAC 2 cut(s) 601, 640
TseI GCWGC 2 cut(s) 479, 482
Tsp45I GTSAC 2 cut(s) 601, 640
TspDTI ATGAA 3 cut(s) 431, 507, 688
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 2 cut(s) 100, 610
XceI RCATGY 2 cut(s) 377, 471
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 303, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.