Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007653

Physical Location & Seq

Genomic Coordinates Forward (+)

13703547 .. 13707542

Gene Structure 3996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15880.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGTGGCTTCGAGGCCTGGACTGCCTTCGTGGATGAGCACAGCTGCCACCAAAGTTGATGCCAATTTCAACAGAGAACAACAAACCCAGAACCAGAAGCAGAACCAGAAGCAGAACCAATCTATGCCAATTCCTGATGCAAATTTGAGTTTTGGAGAGAGGGCTTTGTCTGCTGCTGGTGCTGCTTTTGTTTCTGCCATTCTCGTAAACCCTCTCGATGTTGCCAAGACAAGACTACAAGCTCAGGCTGCTGGAGTTCCTTACCAGGGGCTATGCGGTACGCATTGCATTGAAACAAACACGATGCTTCCAGATTTGAGATCATCTATGCCACGCACACCTTCGCTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAACCAGTATAAAGGAACATTGGATGTGTTGTCGAAAGTCATACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTGACATTGGCCATACCAACTGTGGGAATCTACATGCCTTGTTATGACATTTTCCGCAATTTGATGGAAGAGTTTACAACTCAGAATGCACCAAATCTAACACCATATGTGCCATTAGTTGCTGGCACATTAGCACGTTCACTGGCATGCGTCTCTTGTTACCCTATTGAACTGGCAAGGACGCGCATGCAGGCCTTCAAGCAAACCCAAGCTGGTGTGAAGCTTCCAGGAGTCTGGGGGACGCTGACTGGGGCCATAAACCCTGTCAAGAGTACAAACCCCTTTCAGAATCTACAAAGTTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGTTCGTGATGTTCCTTTCTCTGCAATCTGTTGGTCAACTCTTGAGCCGATGAGGCGCAGAATTCTTGGTCTGGTAGGTAATGAACCTAGTGCAGCCTCTGTCCTTGGGGCAAATTTCTCTGCCGGATTTGTTGCAGGAAGTCTTGCAGCTGCTGCTACATGCCCCCTAGATGTGGCAAAAACCAGACGACAGATAGAGAAGGATCCTACAAGGGCATTGAATATGACAACAAGACAAACTTTGGTTGAGATTTGGAGGGATGGAGGAATGAAGGGGCTGTTTATGGGAATCGGTCCTCGTGTTGGTCGAGCTGGCCCTTCAGTTGGGATCGTTGTCTCCTTTTATGAAGTTGTCAAGTATGCTATACATTATAGACAGCTGACTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

398

Amino Acids

43.22

Weight (kDa)

9.66

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	49 - 88	3.4e-06	Mitochondrial carrier protein
Mito_carr	PF00153	130 - 179	1.9e-08	Mitochondrial carrier protein
Mito_carr	PF00153	189 - 289	2.6e-10	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46320 AT2G46320 AT2G46320 AT2G46320 AT2G46320
fragaria_vesca	FvH4_7g15880 FvH4_7g15880 FvH4_7g15880
malus_domestica	MD01G1075800.v1.1 MD07G1144600.v1.1
prunus_persica	Prupe.2G183400_v2.0.a1
pyrus_communis	pycom01g10470 pycom07g14320
rosa_chinensis	RchiOBHm_Chr1g0358701
rosa_laevigata	RLG00000027934
rosa_multiflora	Rmu_sc0011191.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297690
rosa_rugosa	Rorug01G0264400 Rorug01G0264500
rosa_samantha	Rh1AG278900 Rh1BG245500 Rh1CG262400 Rh1DG273800
rosa_wichuraiana	Rw1G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	652
AciI	CCGC	2 cut(s)	276, 523
AclWI	GGATC	5 cut(s)	348, 361, 1001, 1014, 1139
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	3 cut(s)	142, 864, 916
AcuI	CTGAAG	1 cut(s)	1107
AfaI	GTAC	2 cut(s)	280, 742
AfiI	CCNNNNNNNGG	5 cut(s)	266, 491, 976, 1106, 1127
AgsI	TTSAA	5 cut(s)	70, 293, 638, 667, 1024
AjnI	CCWGG	3 cut(s)	16, 264, 694
AluBI	AGCT	9 cut(s)	44, 242, 468, 680, 691, 797, 953, 1115, 1183
AluI	AGCT	9 cut(s)	44, 242, 468, 680, 691, 797, 953, 1115, 1183
Alw21I	GWGCWC	2 cut(s)	41, 799
Alw26I	GTCTC	3 cut(s)	436, 625, 1144
AlwI	GGATC	5 cut(s)	348, 361, 1001, 1014, 1139
AlwNI	CAGNNNCTG	2 cut(s)	902, 956
AoxI	GGCC	6 cut(s)	14, 477, 660, 720, 787, 1117
ApeKI	GCWGC	8 cut(s)	44, 173, 182, 248, 896, 950, 953, 956
ApoI	RAATTY	3 cut(s)	142, 864, 916
AspLEI	GCGC	2 cut(s)	654, 861
AspS9I	GGNCC	3 cut(s)	720, 1097, 1118
AvaII	GGWCC	1 cut(s)	1097
BalI	TGGCCA	1 cut(s)	479
BamHI	GGATCC	2 cut(s)	353, 1006
BanII	GRGCYC	1 cut(s)	799
BauI	CACGAG	1 cut(s)	1101
Bbv12I	GWGCWC	2 cut(s)	41, 799
BbvI	GCAGC	8 cut(s)	31, 160, 169, 235, 908, 940, 943, 962
BccI	CCATC	2 cut(s)	526, 1058
BciT130I	CCWGG	3 cut(s)	18, 266, 696
BcoDI	GTCTC	3 cut(s)	436, 625, 1144
BfaI	CTAG	2 cut(s)	891, 971
BglI	GCCNNNNNGGC	1 cut(s)	856
BisI	GCNGC	8 cut(s)	45, 174, 183, 249, 897, 951, 954, 957
BlsI	GCNGC	8 cut(s)	46, 175, 184, 250, 898, 952, 955, 958
Bme1390I	CCNGG	3 cut(s)	18, 266, 696
Bme18I	GGWCC	1 cut(s)	1097
BmgT120I	GGNCC	3 cut(s)	720, 1097, 1118
BmiI	GGNNCC	4 cut(s)	355, 457, 721, 1008
BmrFI	CCNGG	3 cut(s)	18, 266, 696
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	4 cut(s)	49, 127, 294, 783
BmuI	ACTGGG	1 cut(s)	726
BpmI	CTGGAG	2 cut(s)	273, 469
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	866
BsaJI	CCNNGG	3 cut(s)	265, 790, 907
Bsc4I	CCNNNNNNNGG	5 cut(s)	266, 491, 976, 1106, 1127
Bse1I	ACTGG	5 cut(s)	385, 615, 645, 721, 790
Bse3DI	GCAATG	1 cut(s)	283
BseBI	CCWGG	3 cut(s)	18, 266, 696
BseDI	CCNNGG	3 cut(s)	265, 790, 907
BseGI	GGATG	3 cut(s)	39, 409, 1069
BseLI	CCNNNNNNNGG	5 cut(s)	266, 491, 976, 1106, 1127
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	3 cut(s)	257, 563, 1179
BseNI	ACTGG	5 cut(s)	385, 615, 645, 721, 790
BseXI	GCAGC	8 cut(s)	31, 160, 169, 235, 908, 940, 943, 962
BsgI	GTGCAG	1 cut(s)	915
Bsh1236I	CGCG	1 cut(s)	652
BshFI	GGCC	6 cut(s)	16, 479, 662, 722, 789, 1119
BsiHKAI	GWGCWC	2 cut(s)	41, 799
BsiSI	CCGG	1 cut(s)	927
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	5 cut(s)	266, 491, 976, 1106, 1127
BsmAI	GTCTC	3 cut(s)	436, 625, 1144
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	721
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	6 cut(s)	16, 479, 662, 722, 789, 1119
Bsp1286I	GDGCHC	2 cut(s)	41, 799
Bsp143I	GATC	4 cut(s)	320, 353, 1006, 1131
BspACI	CCGC	2 cut(s)	276, 523
BspANI	GGCC	6 cut(s)	16, 479, 662, 722, 789, 1119
BspCNI	CTCAG	3 cut(s)	256, 562, 1180
BspFNI	CGCG	1 cut(s)	652
BspLI	GGNNCC	4 cut(s)	355, 457, 721, 1008
BspPI	GGATC	5 cut(s)	348, 361, 1001, 1014, 1139
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	5 cut(s)	385, 615, 645, 721, 790
BssECI	CCNNGG	3 cut(s)	265, 790, 907
BssMI	GATC	4 cut(s)	320, 353, 1006, 1131
BssSI	CACGAG	1 cut(s)	1101
BssT1I	CCWWGG	2 cut(s)	790, 907
Bst2BI	CACGAG	1 cut(s)	1101
Bst2UI	CCWGG	3 cut(s)	18, 266, 696
Bst4CI	ACNGT	2 cut(s)	364, 490
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstC8I	GCNNGC	6 cut(s)	466, 592, 616, 656, 660, 1117
BstDEI	CTNAG	3 cut(s)	243, 549, 1188
BstF5I	GGATG	3 cut(s)	39, 409, 1069
BstFNI	CGCG	1 cut(s)	652
BstHHI	GCGC	2 cut(s)	654, 861
BstKTI	GATC	4 cut(s)	323, 356, 1009, 1134
BstMAI	GTCTC	3 cut(s)	436, 625, 1144
BstMBI	GATC	4 cut(s)	320, 353, 1006, 1131
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 170, 179, 182, 248, 856, 956
BstNI	CCWGG	3 cut(s)	18, 266, 696
BstNSI	RCATGY	4 cut(s)	505, 618, 658, 966
BstSCI	CCNGG	3 cut(s)	16, 264, 694
BstUI	CGCG	1 cut(s)	652
BstV1I	GCAGC	8 cut(s)	31, 160, 169, 235, 908, 940, 943, 962
BstX2I	RGATCY	2 cut(s)	353, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	2 cut(s)	353, 1006
BsuRI	GGCC	6 cut(s)	16, 479, 662, 722, 789, 1119
BtsCI	GGATG	3 cut(s)	39, 409, 1069
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	6 cut(s)	466, 592, 616, 656, 660, 1117
CaiI	CAGNNNCTG	2 cut(s)	902, 956
CfoI	GCGC	2 cut(s)	654, 861
Cfr13I	GGNCC	3 cut(s)	720, 1097, 1118
CseI	GACGC	3 cut(s)	607, 658, 718
Csp6I	GTAC	2 cut(s)	279, 741
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	4 cut(s)	502, 615, 655, 963
CviQI	GTAC	2 cut(s)	279, 741
DdeI	CTNAG	3 cut(s)	243, 549, 1188
DpnI	GATC	4 cut(s)	322, 355, 1008, 1133
DpnII	GATC	4 cut(s)	320, 353, 1006, 1131
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	797
Eco130I	CCWWGG	2 cut(s)	790, 907
Eco147I	AGGCCT	2 cut(s)	16, 662
Eco24I	GRGCYC	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	1097
Eco53kI	GAGCTC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	1107
EcoICRI	GAGCTC	1 cut(s)	797
EcoRI	GAATTC	1 cut(s)	864
EcoRII	CCWGG	3 cut(s)	16, 264, 694
EcoT14I	CCWWGG	2 cut(s)	790, 907
EcoT38I	GRGCYC	1 cut(s)	799
ErhI	CCWWGG	2 cut(s)	790, 907
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	4 cut(s)	505, 618, 658, 966
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	4 cut(s)	501, 614, 654, 962
FauNDI	CATATG	1 cut(s)	574
Fnu4HI	GCNGC	8 cut(s)	45, 174, 183, 249, 897, 951, 954, 957
FokI	GGATG	3 cut(s)	46, 416, 1076
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	8 cut(s)	45, 174, 183, 249, 897, 951, 954, 957
FspBI	CTAG	2 cut(s)	891, 971
GlaI	GCGC	2 cut(s)	653, 860
GluI	GCNGC	8 cut(s)	45, 174, 183, 249, 897, 951, 954, 957
GsuI	CTGGAG	2 cut(s)	273, 469
HaeIII	GGCC	6 cut(s)	16, 479, 662, 722, 789, 1119
HapII	CCGG	1 cut(s)	927
HgaI	GACGC	3 cut(s)	607, 658, 718
HhaI	GCGC	2 cut(s)	654, 861
Hin1II	CATG	4 cut(s)	505, 618, 658, 966
Hin6I	GCGC	2 cut(s)	652, 859
HinP1I	GCGC	2 cut(s)	652, 859
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HindIII	AAGCTT	2 cut(s)	466, 689
HinfI	GANTC	5 cut(s)	444, 495, 699, 757, 1092
HpaII	CCGG	1 cut(s)	927
Hpy166II	GTNNAC	5 cut(s)	208, 543, 608, 783, 840
Hpy188I	TCNGA	2 cut(s)	552, 756
Hpy188III	TCNNGA	8 cut(s)	134, 215, 311, 428, 448, 736, 809, 845
Hpy8I	GTNNAC	5 cut(s)	208, 543, 608, 783, 840
HpyAV	CCTTC	7 cut(s)	36, 351, 425, 673, 997, 1069, 1131
HpyCH4III	ACNGT	2 cut(s)	364, 490
HpyCH4IV	ACGT	2 cut(s)	424, 604
HpyCH4V	TGCA	9 cut(s)	140, 288, 464, 557, 658, 827, 896, 938, 950
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 170, 179, 182, 248, 856, 956
HpyF3I	CTNAG	3 cut(s)	243, 549, 1188
HpySE526I	ACGT	2 cut(s)	424, 604
Hsp92II	CATG	4 cut(s)	505, 618, 658, 966
HspAI	GCGC	2 cut(s)	652, 859
Kzo9I	GATC	4 cut(s)	320, 353, 1006, 1131
LmnI	GCTCC	1 cut(s)	794
Lsp1109I	GCAGC	8 cut(s)	31, 160, 169, 235, 908, 940, 943, 962
LweI	GCATC	4 cut(s)	49, 127, 294, 783
MaeI	CTAG	2 cut(s)	891, 971
MaeII	ACGT	2 cut(s)	424, 604
MaeIII	GTNAC	2 cut(s)	380, 626
MalI	GATC	4 cut(s)	322, 355, 1008, 1133
MboI	GATC	4 cut(s)	320, 353, 1006, 1131
MboII	GAAGA	1 cut(s)	548
MflI	RGATCY	2 cut(s)	353, 1006
MhlI	GDGCHC	2 cut(s)	41, 799
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	7 cut(s)	64, 129, 142, 348, 526, 864, 916
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	438, 708
MnlI	CCTC	9 cut(s)	6, 153, 222, 446, 849, 910, 1053, 1061, 1110
Mox20I	TGGCCA	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	479
MslI	CAYNNNNRTG	2 cut(s)	376, 613
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	3 cut(s)	44, 953, 1183
MspI	CCGG	1 cut(s)	927
MspR9I	CCNGG	3 cut(s)	18, 266, 696
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	3 cut(s)	18, 266, 696
MvnI	CGCG	1 cut(s)	652
MwoI	GCNNNNNNNGC	7 cut(s)	22, 170, 179, 182, 248, 856, 956
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	4 cut(s)	320, 353, 1006, 1131
NlaIII	CATG	4 cut(s)	505, 618, 658, 966
NlaIV	GGNNCC	4 cut(s)	355, 457, 721, 1008
NspI	RCATGY	4 cut(s)	505, 618, 658, 966
PaeI	GCATGC	2 cut(s)	618, 658
PceI	AGGCCT	2 cut(s)	16, 662
PcsI	WCGNNNNNNNCGW	1 cut(s)	1108
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	3 cut(s)	495, 757, 1092
PfoI	TCCNGGA	1 cut(s)	694
PkrI	GCNGC	8 cut(s)	46, 175, 184, 250, 898, 952, 955, 958
PleI	GAGTC	2 cut(s)	438, 707
PpsI	GAGTC	2 cut(s)	438, 707
Psp124BI	GAGCTC	1 cut(s)	799
Psp6I	CCWGG	3 cut(s)	16, 264, 694
PspGI	CCWGG	3 cut(s)	16, 264, 694
PspN4I	GGNNCC	4 cut(s)	355, 457, 721, 1008
PspPI	GGNCC	3 cut(s)	720, 1097, 1118
PstNI	CAGNNNCTG	2 cut(s)	902, 956
PsuI	RGATCY	2 cut(s)	353, 1006
PvuII	CAGCTG	3 cut(s)	44, 953, 1183
RsaI	GTAC	2 cut(s)	280, 742
RsaNI	GTAC	2 cut(s)	279, 741
RseI	CAYNNNNRTG	2 cut(s)	376, 613
SacI	GAGCTC	1 cut(s)	799
SatI	GCNGC	8 cut(s)	45, 174, 183, 249, 897, 951, 954, 957
Sau3AI	GATC	4 cut(s)	320, 353, 1006, 1131
Sau96I	GGNCC	3 cut(s)	720, 1097, 1118
SchI	GAGTC	2 cut(s)	438, 708
ScrFI	CCNGG	3 cut(s)	18, 266, 696
SduI	GDGCHC	2 cut(s)	41, 799
SfaNI	GCATC	4 cut(s)	49, 127, 294, 783
SinI	GGWCC	1 cut(s)	1097
SmiMI	CAYNNNNRTG	2 cut(s)	376, 613
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SphI	GCATGC	2 cut(s)	618, 658
Sse9I	AATT	7 cut(s)	64, 129, 142, 348, 526, 864, 916
SseBI	AGGCCT	2 cut(s)	16, 662
SsiI	CCGC	2 cut(s)	276, 523
SspMI	CTAG	2 cut(s)	891, 971
SstI	GAGCTC	1 cut(s)	799
StuI	AGGCCT	2 cut(s)	16, 662
StyD4I	CCNGG	3 cut(s)	16, 264, 694
StyI	CCWWGG	2 cut(s)	790, 907
TaaI	ACNGT	2 cut(s)	364, 490
TaiI	ACGT	2 cut(s)	427, 607
TaqI	TCGA	4 cut(s)	11, 216, 413, 1111
TaqII	GACCGA	1 cut(s)	1085
TasI	AATT	7 cut(s)	64, 129, 142, 348, 526, 864, 916
TatI	WGTACW	1 cut(s)	740
TfiI	GAWTC	3 cut(s)	495, 757, 1092
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	8 cut(s)	44, 173, 182, 248, 896, 950, 953, 956
TspDTI	ATGAA	3 cut(s)	900, 1088, 1164
TspRI	CASTG	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	1097
XapI	RAATTY	3 cut(s)	142, 864, 916
XceI	RCATGY	4 cut(s)	505, 618, 658, 966
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	2 cut(s)	891, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.