Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007653

Physical Location & Seq

Genomic Coordinates Forward (+)

50705272 .. 50710084

Gene Structure 4813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGTGGCTTCAAGGCCGGTCTCGCCTTCGTGGATGAGCACAGCAGCGAGCAGAGTTGATGCCAATTTCAGAGAAAGCAAAGAACAACAACAACAAAAACAGAGGCAGCAGCAGCAGAACCAATCTGTTCCCATTCCTGATGCCAATTTGAGTTTCGGAGAGAGGGCTTTGTCTGCTGCTGGTGCTGCTTTTGTTTCCGCGATTCTCGTGAACCCTCTCGATGTTGCCAAGACAAGGTTGCAAGCGCAGGCTGCCGGAGTACCTTACCAGGGCCTATGTGCTACGCCTTGCATTGAAACAAACACGATGCTTCCAGATTTAAGATCATCTGCGCTACGTACACCTTCGCTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAGCCAGTATAAAGGAACACTGGATGTGCTGTTGAAAGTCATACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTAACATTGGCCATACCAACTGTGGGGATCTACATGCCTTCTTATGACATTTTCCGCAATTTGATGGAAGAGTTCACAACTCAGAATGCACCAAATCTAACACCATATGTCCCATTAGTTGCTGGGTCATTAGCACGATCATTGGCTTGTGTCTCTTGTTACCCTATTGAACTGGCAAGGACACGCATGCAGGCCTTCAAGCAAACCCAAGCTGGTGTTAAGCTTCCAGGAGTTTGGGGAACGCTGACTGGGGCCATCAACCCTGTCAAGAGTACAAACCCCCTTCATAACTTACAAAACTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGCTCGTGATGTTCCTTTTTCTGCAATCTGTTGGTCAACTCTTGAGCCAATAAGGCGCAGAATTCTTGGTCTGGTAGGTGATGAACCTAGTGCAGCCACTATCCTTGGGGCAAATTTCTCTGCTGGATTTGTTGCAGGAAGTCTTGCAGCTGCTGCTACATGTCCGCTAGATGTGGCAAAAACCCGACGACAGATAGAGGTTATTTCTCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

340

Amino Acids

36.79

Weight (kDa)

9.55

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	50 - 88	3.5e-06	Mitochondrial carrier protein
Mito_carr	PF00153	131 - 180	6.2e-08	Mitochondrial carrier protein
Mito_carr	PF00153	190 - 290	1.4e-10	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46320 AT2G46320 AT2G46320 AT2G46320 AT2G46320
fragaria_vesca	FvH4_7g15880 FvH4_7g15880 FvH4_7g15880
malus_domestica	MD01G1075800.v1.1 MD07G1144600.v1.1
prunus_persica	Prupe.2G183400_v2.0.a1
pyrus_communis	pycom01g10470 pycom07g14320
rosa_chinensis	RchiOBHm_Chr1g0358701
rosa_laevigata	RLG00000027934
rosa_multiflora	Rmu_sc0011191.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297690
rosa_rugosa	Rorug01G0264400 Rorug01G0264500
rosa_samantha	Rh1AG278900 Rh1BG245500 Rh1CG262400 Rh1DG273800
rosa_wichuraiana	Rw1G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	198, 526, 971
AclWI	GGATC	3 cut(s)	351, 364, 506
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	867, 919
AfaI	GTAC	3 cut(s)	261, 340, 745
AfiI	CCNNNNNNNGG	3 cut(s)	234, 269, 494
AflIII	ACRYGT	1 cut(s)	965
AgsI	TTSAA	5 cut(s)	12, 296, 418, 641, 670
AjnI	CCWGG	2 cut(s)	267, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	471, 683, 694, 800, 956
AluI	AGCT	5 cut(s)	471, 683, 694, 800, 956
Alw21I	GWGCWC	2 cut(s)	41, 802
Alw26I	GTCTC	3 cut(s)	25, 439, 628
AlwI	GGATC	3 cut(s)	351, 364, 506
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	6 cut(s)	14, 271, 480, 663, 723, 790
ApoI	RAATTY	2 cut(s)	867, 919
AspLEI	GCGC	3 cut(s)	247, 334, 864
AspS9I	GGNCC	2 cut(s)	271, 723
AsuHPI	GGTGA	1 cut(s)	896
BalI	TGGCCA	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	802
BauI	CACGAG	2 cut(s)	206, 810
Bbv12I	GWGCWC	2 cut(s)	41, 802
BccI	CCATC	2 cut(s)	529, 734
BciT130I	CCWGG	2 cut(s)	269, 699
BcoDI	GTCTC	3 cut(s)	25, 439, 628
BfaI	CTAG	2 cut(s)	894, 974
BglI	GCCNNNNNGGC	1 cut(s)	859
Bme1390I	CCNGG	2 cut(s)	269, 699
BmgT120I	GGNCC	2 cut(s)	271, 723
BmiI	GGNNCC	3 cut(s)	358, 460, 724
BmrFI	CCNGG	2 cut(s)	269, 699
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	4 cut(s)	49, 130, 297, 786
BmuI	ACTGGG	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	869
BsaAI	YACGTR	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	268, 793, 910
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 269, 494
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	5 cut(s)	388, 408, 648, 724, 793
BseBI	CCWGG	2 cut(s)	269, 699
BseDI	CCNNGG	3 cut(s)	268, 793, 910
BseGI	GGATG	2 cut(s)	39, 412
BseLI	CCNNNNNNNGG	3 cut(s)	234, 269, 494
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	5 cut(s)	388, 408, 648, 724, 793
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	918
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	6 cut(s)	16, 273, 482, 665, 725, 792
BsiHKAI	GWGCWC	2 cut(s)	41, 802
BsiSI	CCGG	2 cut(s)	17, 255
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	3 cut(s)	234, 269, 494
BsmAI	GTCTC	3 cut(s)	25, 439, 628
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	6 cut(s)	16, 273, 482, 665, 725, 792
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	41, 802
Bsp143I	GATC	4 cut(s)	323, 356, 498, 608
BspACI	CCGC	3 cut(s)	198, 526, 971
BspANI	GGCC	6 cut(s)	16, 273, 482, 665, 725, 792
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	3 cut(s)	358, 460, 724
BspPI	GGATC	3 cut(s)	351, 364, 506
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	5 cut(s)	388, 408, 648, 724, 793
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	268, 793, 910
BssMI	GATC	4 cut(s)	323, 356, 498, 608
BssSI	CACGAG	2 cut(s)	206, 810
BssT1I	CCWWGG	2 cut(s)	793, 910
Bst2BI	CACGAG	2 cut(s)	206, 810
Bst2UI	CCWGG	2 cut(s)	269, 699
Bst4CI	ACNGT	2 cut(s)	367, 493
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	6 cut(s)	49, 243, 249, 469, 659, 663
BstDEI	CTNAG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	39, 412
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	3 cut(s)	247, 334, 864
BstKTI	GATC	4 cut(s)	326, 359, 501, 611
BstMAI	GTCTC	3 cut(s)	25, 439, 628
BstMBI	GATC	4 cut(s)	323, 356, 498, 608
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 112, 173, 182, 185, 251, 806, 859, 959
BstNI	CCWGG	2 cut(s)	269, 699
BstNSI	RCATGY	3 cut(s)	508, 661, 969
BstSCI	CCNGG	2 cut(s)	267, 697
BstSNI	TACGTA	1 cut(s)	338
BstUI	CGCG	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	356, 498
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstYI	RGATCY	2 cut(s)	356, 498
BsuRI	GGCC	6 cut(s)	16, 273, 482, 665, 725, 792
BtsCI	GGATG	2 cut(s)	39, 412
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	6 cut(s)	49, 243, 249, 469, 659, 663
CaiI	CAGNNNCTG	1 cut(s)	959
CfoI	GCGC	3 cut(s)	247, 334, 864
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	271, 723
Csp6I	GTAC	3 cut(s)	260, 339, 744
CspCI	CAANNNNNGTGG	2 cut(s)	892, 927
CviAII	CATG	3 cut(s)	505, 658, 966
CviQI	GTAC	3 cut(s)	260, 339, 744
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	4 cut(s)	325, 358, 500, 610
DpnII	GATC	4 cut(s)	323, 356, 498, 608
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	800
Eco105I	TACGTA	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	793, 910
Eco147I	AGGCCT	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	802
Eco31I	GGTCTC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	867
EcoRII	CCWGG	2 cut(s)	267, 697
EcoT14I	CCWWGG	2 cut(s)	793, 910
EcoT38I	GRGCYC	1 cut(s)	802
ErhI	CCWWGG	2 cut(s)	793, 910
FaeI	CATG	3 cut(s)	508, 661, 969
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	3 cut(s)	504, 657, 965
FauNDI	CATATG	1 cut(s)	577
FokI	GGATG	2 cut(s)	46, 419
FriOI	GRGCYC	1 cut(s)	802
FspBI	CTAG	2 cut(s)	894, 974
GlaI	GCGC	3 cut(s)	246, 333, 863
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	6 cut(s)	16, 273, 482, 665, 725, 792
HapII	CCGG	2 cut(s)	17, 255
HhaI	GCGC	3 cut(s)	247, 334, 864
Hin1II	CATG	3 cut(s)	508, 661, 969
Hin6I	GCGC	3 cut(s)	245, 332, 862
HinP1I	GCGC	3 cut(s)	245, 332, 862
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HindIII	AAGCTT	2 cut(s)	469, 692
HinfI	GANTC	2 cut(s)	202, 447
HpaII	CCGG	2 cut(s)	17, 255
HphI	GGTGA	1 cut(s)	896
Hpy166II	GTNNAC	5 cut(s)	211, 341, 546, 786, 843
Hpy188I	TCNGA	3 cut(s)	71, 158, 555
Hpy188III	TCNNGA	9 cut(s)	137, 208, 218, 314, 431, 451, 739, 812, 848
Hpy8I	GTNNAC	5 cut(s)	211, 341, 546, 786, 843
Hpy99I	CGWCG	1 cut(s)	996
HpyAV	CCTTC	6 cut(s)	36, 354, 428, 519, 676, 764
HpyCH4III	ACNGT	2 cut(s)	367, 493
HpyCH4IV	ACGT	2 cut(s)	337, 427
HpyCH4V	TGCA	9 cut(s)	241, 291, 467, 560, 661, 830, 899, 941, 953
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 112, 173, 182, 185, 251, 806, 859, 959
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	337, 427
Hsp92II	CATG	3 cut(s)	508, 661, 969
HspAI	GCGC	3 cut(s)	245, 332, 862
Kzo9I	GATC	4 cut(s)	323, 356, 498, 608
LmnI	GCTCC	1 cut(s)	797
LweI	GCATC	4 cut(s)	49, 130, 297, 786
MaeI	CTAG	2 cut(s)	894, 974
MaeII	ACGT	2 cut(s)	337, 427
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	4 cut(s)	325, 358, 500, 610
MboI	GATC	4 cut(s)	323, 356, 498, 608
MboII	GAAGA	1 cut(s)	551
MflI	RGATCY	2 cut(s)	356, 498
MhlI	GDGCHC	2 cut(s)	41, 802
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	6 cut(s)	64, 145, 351, 529, 867, 919
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	441
MnlI	CCTC	5 cut(s)	96, 156, 225, 449, 997
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	3 cut(s)	320, 473, 690
MslI	CAYNNNNRTG	1 cut(s)	379
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	2 cut(s)	17, 255
MspR9I	CCNGG	2 cut(s)	269, 699
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	2 cut(s)	269, 699
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	9 cut(s)	22, 112, 173, 182, 185, 251, 806, 859, 959
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	4 cut(s)	323, 356, 498, 608
NlaIII	CATG	3 cut(s)	508, 661, 969
NlaIV	GGNNCC	3 cut(s)	358, 460, 724
NspI	RCATGY	3 cut(s)	508, 661, 969
PaeI	GCATGC	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	665
PciI	ACATGT	1 cut(s)	965
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	697
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
Ppu21I	YACGTR	1 cut(s)	338
PscI	ACATGT	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	802
Psp6I	CCWGG	2 cut(s)	267, 697
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	2 cut(s)	267, 697
PspN4I	GGNNCC	3 cut(s)	358, 460, 724
PspPI	GGNCC	2 cut(s)	271, 723
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	356, 498
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	3 cut(s)	261, 340, 745
RsaNI	GTAC	3 cut(s)	260, 339, 744
RseI	CAYNNNNRTG	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	802
SaqAI	TTAA	3 cut(s)	320, 473, 690
Sau3AI	GATC	4 cut(s)	323, 356, 498, 608
Sau96I	GGNCC	2 cut(s)	271, 723
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	2 cut(s)	269, 699
SduI	GDGCHC	2 cut(s)	41, 802
SfaNI	GCATC	4 cut(s)	49, 130, 297, 786
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
SnaBI	TACGTA	1 cut(s)	338
SphI	GCATGC	1 cut(s)	661
Sse9I	AATT	6 cut(s)	64, 145, 351, 529, 867, 919
SseBI	AGGCCT	1 cut(s)	665
SsiI	CCGC	3 cut(s)	198, 526, 971
SspMI	CTAG	2 cut(s)	894, 974
SstI	GAGCTC	1 cut(s)	802
StuI	AGGCCT	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	267, 697
StyI	CCWWGG	2 cut(s)	793, 910
TaaI	ACNGT	2 cut(s)	367, 493
TaiI	ACGT	2 cut(s)	340, 430
TaqI	TCGA	1 cut(s)	219
TasI	AATT	6 cut(s)	64, 145, 351, 529, 867, 919
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	320, 473, 690
Tru9I	TTAA	3 cut(s)	320, 473, 690
TscAI	CASTG	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	746, 903
TspRI	CASTG	1 cut(s)	408
XapI	RAATTY	2 cut(s)	867, 919
XceI	RCATGY	3 cut(s)	508, 661, 969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	2 cut(s)	894, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.