RLG00000027934

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007653
Physical Location & Seq
Reverse (-)
16978242 .. 16982425
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027934

Sequence Viewer

Length: 1077 bp
ATGGTGGCTTCAAGGCCGGTCTCGCCTTCGTGGATGAGCACAGCAGCGAGCAGAGTTGATGCCAATTTCAGAGAAAGCAAAGAACAACAACAACAACAGAGGCGGCAGCAGCAGAACCAATCTGTTCCCATTCCTGATGCCAATTTGAGTTTCGGAGAGAGGGCTTTGTCTGCTGCTGGTGCTGCTTTTGTTTCCGCGATTCTCGTGAACCCTCTCGATGTTGCCAAGACAAGGTTGCAAGCGCAGGCTGCCGGAGTACCTTACCAGGGCCTATGTGGTACGCCTTGCATTGAAACAAACACGATGCTTCCAGATTTAAGATCATCTGCGCTGCGCACGCCTTCACTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAACCAGTATAAAGGAACACTGGATGTGCTGTTGAAAGTCATACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTAACATTGGCCATACCAACTGTGGGGATCTACATGCCTTGTTATGACATTTTCCGCAATTTGATGGAAGAGTTCACAACTCAGAATGCACCAAATCTAACACCATATGTCCCATTAGTTGCTGGGTCATTAGCACGATCATTGGCTTGTGTTTCTTGTTACCCAATTGAACTGGCAAGGACACGCATGCAGGCCTTCAAGCAAACCCAAGCTGGTGTTAAGCTTCCAGGAGTTTGGGGAACGCTGACTGGGGCCATCAACCCTGTCAAGAGTACAAACCCCCTTCATAACTTGCAAAACTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGCTCGTGATGTTCCTTTTTCTGCAATCTGTTGGTCAACTCTTGAGCCAATAAGGCGCAGAATTCTTGGTCTGGTAGGAGATGAACCTAGTGCAGCCACTATCCTTGGGGCAAATTTCTCTGCCGGATTTGTTGCAGGAAGTCTTGCAGCTGCTGCTACATGTCCGCTAGATGTGGCAAAAACCCGACGACAGATAGAGAAGGATCCTACAAGGGCATTGAACATGACAACAAGGCAAACTTTGCTTGAGATTTGGAGGTATGTGAGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

359

Amino Acids

39.12

Weight (kDa)

9.65

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 49 - 85 4.6e-06 Mitochondrial carrier protein
Mito_carr PF00153 130 - 179 4.5e-08 Mitochondrial carrier protein
Mito_carr PF00153 189 - 289 1.6e-10 Mitochondrial carrier protein
Mito_carr PF00153 304 - 354 1.2e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 335
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 103, 195, 523, 968
AclWI GGATC 5 cut(s) 348, 361, 503, 1001, 1014
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 2 cut(s) 864, 916
AfaI GTAC 3 cut(s) 258, 280, 742
AfiI CCNNNNNNNGG 3 cut(s) 231, 266, 491
AflIII ACRYGT 1 cut(s) 962
AgsI TTSAA 6 cut(s) 12, 293, 415, 638, 667, 1024
AjnI CCWGG 2 cut(s) 264, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 5 cut(s) 468, 680, 691, 797, 953
AluI AGCT 5 cut(s) 468, 680, 691, 797, 953
Alw21I GWGCWC 2 cut(s) 41, 799
Alw26I GTCTC 3 cut(s) 25, 436, 1063
AlwI GGATC 5 cut(s) 348, 361, 503, 1001, 1014
AlwNI CAGNNNCTG 1 cut(s) 956
AoxI GGCC 6 cut(s) 14, 268, 477, 660, 720, 787
ApoI RAATTY 2 cut(s) 864, 916
AspLEI GCGC 4 cut(s) 244, 331, 336, 861
AspS9I GGNCC 2 cut(s) 268, 720
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 2 cut(s) 353, 1006
BanII GRGCYC 1 cut(s) 799
BauI CACGAG 2 cut(s) 203, 807
Bbv12I GWGCWC 2 cut(s) 41, 799
BccI CCATC 2 cut(s) 526, 731
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 2 cut(s) 266, 696
BcoDI GTCTC 3 cut(s) 25, 436, 1063
BfaI CTAG 2 cut(s) 891, 971
BglI GCCNNNNNGGC 1 cut(s) 856
Bme1390I CCNGG 2 cut(s) 266, 696
BmgT120I GGNCC 2 cut(s) 268, 720
BmiI GGNNCC 4 cut(s) 355, 457, 721, 1008
BmrFI CCNGG 2 cut(s) 266, 696
BmrI ACTGGG 1 cut(s) 726
BmsI GCATC 4 cut(s) 49, 127, 294, 783
BmuI ACTGGG 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 469
BpuEI CTTGAG 2 cut(s) 866, 1070
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 265, 790, 907
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 266, 491
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 5 cut(s) 385, 405, 645, 721, 790
BseBI CCWGG 2 cut(s) 266, 696
BseDI CCNNGG 3 cut(s) 265, 790, 907
BseGI GGATG 2 cut(s) 39, 409
BseLI CCNNNNNNNGG 3 cut(s) 231, 266, 491
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 5 cut(s) 385, 405, 645, 721, 790
BseYI CCCAGC 1 cut(s) 590
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 6 cut(s) 16, 270, 479, 662, 722, 789
BsiHKAI GWGCWC 2 cut(s) 41, 799
BsiSI CCGG 3 cut(s) 17, 252, 927
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 3 cut(s) 231, 266, 491
BsmAI GTCTC 3 cut(s) 25, 436, 1063
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 6 cut(s) 16, 270, 479, 662, 722, 789
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 41, 799
Bsp143I GATC 5 cut(s) 320, 353, 495, 605, 1006
BspACI CCGC 4 cut(s) 103, 195, 523, 968
BspANI GGCC 6 cut(s) 16, 270, 479, 662, 722, 789
BspCNI CTCAG 1 cut(s) 562
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 4 cut(s) 355, 457, 721, 1008
BspPI GGATC 5 cut(s) 348, 361, 503, 1001, 1014
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 5 cut(s) 385, 405, 645, 721, 790
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 265, 790, 907
BssMI GATC 5 cut(s) 320, 353, 495, 605, 1006
BssSI CACGAG 2 cut(s) 203, 807
BssT1I CCWWGG 2 cut(s) 790, 907
Bst2BI CACGAG 2 cut(s) 203, 807
Bst2UI CCWGG 2 cut(s) 266, 696
Bst4CI ACNGT 2 cut(s) 364, 490
Bst6I CTCTTC 1 cut(s) 531
BstAPI GCANNNNNTGC 2 cut(s) 956, 1045
BstC8I GCNNGC 7 cut(s) 49, 240, 246, 338, 466, 656, 660
BstDEI CTNAG 1 cut(s) 549
BstF5I GGATG 2 cut(s) 39, 409
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 4 cut(s) 244, 331, 336, 861
BstKTI GATC 5 cut(s) 323, 356, 498, 608, 1009
BstMAI GTCTC 3 cut(s) 25, 436, 1063
BstMBI GATC 5 cut(s) 320, 353, 495, 605, 1006
BstNI CCWGG 2 cut(s) 266, 696
BstNSI RCATGY 3 cut(s) 505, 658, 966
BstSCI CCNGG 2 cut(s) 264, 694
BstUI CGCG 1 cut(s) 197
BstX2I RGATCY 3 cut(s) 353, 495, 1006
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 3 cut(s) 353, 495, 1006
BsuRI GGCC 6 cut(s) 16, 270, 479, 662, 722, 789
BtsCI GGATG 2 cut(s) 39, 409
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 7 cut(s) 49, 240, 246, 338, 466, 656, 660
CaiI CAGNNNCTG 1 cut(s) 956
CfoI GCGC 4 cut(s) 244, 331, 336, 861
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 268, 720
Csp6I GTAC 3 cut(s) 257, 279, 741
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 4 cut(s) 502, 655, 963, 1027
CviQI GTAC 3 cut(s) 257, 279, 741
DdeI CTNAG 1 cut(s) 549
DpnI GATC 5 cut(s) 322, 355, 497, 607, 1008
DpnII GATC 5 cut(s) 320, 353, 495, 605, 1006
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 797
Eco130I CCWWGG 2 cut(s) 790, 907
Eco147I AGGCCT 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 799
Eco31I GGTCTC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 797
EcoICRI GAGCTC 1 cut(s) 797
EcoO109I RGGNCCY 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 864
EcoRII CCWGG 2 cut(s) 264, 694
EcoT14I CCWWGG 2 cut(s) 790, 907
EcoT38I GRGCYC 1 cut(s) 799
ErhI CCWWGG 2 cut(s) 790, 907
FaeI CATG 4 cut(s) 505, 658, 966, 1030
FalI AAGNNNNNCTT 2 cut(s) 1027, 1059
FaqI GGGAC 1 cut(s) 563
FatI CATG 4 cut(s) 501, 654, 962, 1026
FauNDI CATATG 1 cut(s) 574
FokI GGATG 2 cut(s) 46, 416
FriOI GRGCYC 1 cut(s) 799
FspBI CTAG 2 cut(s) 891, 971
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 4 cut(s) 243, 330, 335, 860
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 6 cut(s) 16, 270, 479, 662, 722, 789
HapII CCGG 3 cut(s) 17, 252, 927
HhaI GCGC 4 cut(s) 244, 331, 336, 861
Hin1II CATG 4 cut(s) 505, 658, 966, 1030
Hin6I GCGC 4 cut(s) 242, 329, 334, 859
HinP1I GCGC 4 cut(s) 242, 329, 334, 859
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HindIII AAGCTT 2 cut(s) 466, 689
HinfI GANTC 2 cut(s) 199, 444
HpaII CCGG 3 cut(s) 17, 252, 927
Hpy166II GTNNAC 4 cut(s) 208, 543, 783, 840
Hpy188I TCNGA 3 cut(s) 71, 155, 552
Hpy188III TCNNGA 9 cut(s) 134, 205, 215, 311, 428, 448, 736, 809, 845
Hpy8I GTNNAC 4 cut(s) 208, 543, 783, 840
Hpy99I CGWCG 1 cut(s) 993
HpyAV CCTTC 6 cut(s) 36, 351, 425, 673, 761, 997
HpyCH4III ACNGT 2 cut(s) 364, 490
HpyCH4IV ACGT 1 cut(s) 424
HpyF3I CTNAG 1 cut(s) 549
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 4 cut(s) 505, 658, 966, 1030
HspAI GCGC 4 cut(s) 242, 329, 334, 859
Kzo9I GATC 5 cut(s) 320, 353, 495, 605, 1006
LmnI GCTCC 1 cut(s) 794
LweI GCATC 4 cut(s) 49, 127, 294, 783
MaeI CTAG 2 cut(s) 891, 971
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 380, 626
MalI GATC 5 cut(s) 322, 355, 497, 607, 1008
MboI GATC 5 cut(s) 320, 353, 495, 605, 1006
MboII GAAGA 1 cut(s) 548
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 3 cut(s) 353, 495, 1006
MhlI GDGCHC 2 cut(s) 41, 799
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 7 cut(s) 64, 142, 348, 526, 633, 864, 916
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 438
MnlI CCTC 5 cut(s) 93, 153, 222, 446, 1053
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 3 cut(s) 317, 470, 687
MslI CAYNNNNRTG 1 cut(s) 376
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 3 cut(s) 17, 252, 927
MspR9I CCNGG 2 cut(s) 266, 696
MteI GCGCNGCGC 1 cut(s) 332
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 2 cut(s) 266, 696
MvnI CGCG 1 cut(s) 197
NdeI CATATG 1 cut(s) 574
NdeII GATC 5 cut(s) 320, 353, 495, 605, 1006
NlaIII CATG 4 cut(s) 505, 658, 966, 1030
NlaIV GGNNCC 4 cut(s) 355, 457, 721, 1008
NsbI TGCGCA 1 cut(s) 335
NspI RCATGY 3 cut(s) 505, 658, 966
PaeI GCATGC 1 cut(s) 658
PceI AGGCCT 1 cut(s) 662
PciI ACATGT 1 cut(s) 962
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 694
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
PscI ACATGT 1 cut(s) 962
Psp124BI GAGCTC 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 264, 694
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 2 cut(s) 264, 694
PspN4I GGNNCC 4 cut(s) 355, 457, 721, 1008
PspPI GGNCC 2 cut(s) 268, 720
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 3 cut(s) 353, 495, 1006
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 3 cut(s) 258, 280, 742
RsaNI GTAC 3 cut(s) 257, 279, 741
RseI CAYNNNNRTG 1 cut(s) 376
SacI GAGCTC 1 cut(s) 799
SaqAI TTAA 3 cut(s) 317, 470, 687
Sau3AI GATC 5 cut(s) 320, 353, 495, 605, 1006
Sau96I GGNCC 2 cut(s) 268, 720
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 2 cut(s) 266, 696
SduI GDGCHC 2 cut(s) 41, 799
SfaNI GCATC 4 cut(s) 49, 127, 294, 783
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 2 cut(s) 845, 1049
SmoI CTYRAG 2 cut(s) 845, 1049
SphI GCATGC 1 cut(s) 658
Sse9I AATT 7 cut(s) 64, 142, 348, 526, 633, 864, 916
SseBI AGGCCT 1 cut(s) 662
SsiI CCGC 4 cut(s) 103, 195, 523, 968
SspMI CTAG 2 cut(s) 891, 971
SstI GAGCTC 1 cut(s) 799
StuI AGGCCT 1 cut(s) 662
StyD4I CCNGG 2 cut(s) 264, 694
StyI CCWWGG 2 cut(s) 790, 907
TaaI ACNGT 2 cut(s) 364, 490
TaiI ACGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 216
TasI AATT 7 cut(s) 64, 142, 348, 526, 633, 864, 916
TatI WGTACW 1 cut(s) 740
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 3 cut(s) 317, 470, 687
Tru9I TTAA 3 cut(s) 317, 470, 687
TscAI CASTG 1 cut(s) 405
TspDTI ATGAA 2 cut(s) 743, 900
TspRI CASTG 1 cut(s) 405
XapI RAATTY 2 cut(s) 864, 916
XceI RCATGY 3 cut(s) 505, 658, 966
XcmI CCANNNNNNNNNTGG 2 cut(s) 272, 487
XspI CTAG 2 cut(s) 891, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.