Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007653

Physical Location & Seq

Genomic Coordinates Forward (+)

37539839 .. 37551531

Gene Structure 11693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0264400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGAACGATCGGCCAGCTAATGATGCAGTGGCAATTGAGCTACGTATTCCCGAAGGAGATGGAGGAAAAATGACAACAGTAGGGAAAAAGCTCGCAGCAAAAACTCATAAGCCGAAGCATTGGTGGAATACAATCTTTATTATATCATGTGCATTTGCTGTCTTCAATGATCCCATCTTCTGTTATATCACAGCCATTGACAACAAAAATAAGTGCTTCATAATGAACAAGAAATTGGCGCTGAAATATGTTTATGCTCGAACAGCAACAGATGTTTTTTACCTATTGGACTTTTTTATTTCTAAGTGTAGATGTTGTTGCTGTAGAGGGAGGTGTTGTGGAGGGATGTGCTGTACAGGGGTGTGCTGTACAGGGAAGAGATGGTGCAATGATTGCACGTCCTACGCTCTTAATCTGTTATCTATTCTATCTCGCCTCTTCGTTTCTCTTCCCATTGCACAGATATATGCAGCAGGGGGGATGAATGTACAATTAGATCCTTTCACTAGAAAATTTCTCTTCCTCACTTCGCTTCAATATACATTACGGATTTACTACATCTACGATTCGTTAAAGCGGCGTCCTATCATAGACATAACCCCAGTTGAAAGATGGGTTAGACCTATATTGGGTTTTGTTCCCTTCATCCTTGCTTCTCATCTATTTGGAGCCTTCTGGTACCTTCTTGCTACTCGGAGACAGCTTCGCTGCTGGGAATTGACGAGAAATAATATCACATCTTACGATCCAGATACTCGCACTAATCAACCAATAAGTTATCTGCACAGCTGTGCGCCAAAGCATAATCAAACCTATGATGAAGGGACTACAATCTGGCTTTGGGATGAATTATGCCCTGTGAATGAATCTAATCCAAAGGCCTTCGACTTTGGTATATATTTTTACGCTCTGCAATCTGATGTGGTTAGTCCATCGCATCCTCTCTTAGACAGAGTATTCCAGTCTTTTTGGTGGGCTCTACGAAATCTGAGTTCTTTTGGCTCAAATCTACTTAGCAGTATGAATACGGCGGAAATCTTCTTTTCTGTTATGATATCTGCAACTGGCATGGCACTGTTTTTAGTTTATCTCAATGCAATGGTGCAGGAGTCAAAAGAAAGGTCAAATAAGCATATGTTGAAAGAGAAGAAGCAATTGATGAAACCAGATATCGATCTGTGGTTATCGAAATACTACCTCGATCTCTCTAAGGATAAGGAGACAACGGTGATCAATAAGGAAAAAGAAAATTTAAAGGTAGTGATCATGGAAAACATACACAAACTCAAAGAAAACTGTGATCTTGATGTGCAAAATATCCTGGGTATTCTTCCCATAAAACACAAACAAAGCACCATGTCATTTCTCTTCTCAGAGTCATTGAAGAAGGGGCCAGTATTTCAAACGATAAATGAAAAGGTGCTAAAAGCAATTTGTCAACATCTTGTGCCACTGACCTACCACTATGCCAAAAAAGCTATCAGACAACAGAGTTCAGACGACAGAATAGTCATTTTCTGTCGTCTGAGTGTTTCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

513

Amino Acids

59.21

Weight (kDa)

9.1

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46320 AT2G46320 AT2G46320 AT2G46320 AT2G46320
fragaria_vesca	FvH4_7g15880 FvH4_7g15880 FvH4_7g15880
malus_domestica	MD01G1075800.v1.1 MD07G1144600.v1.1
prunus_persica	Prupe.2G183400_v2.0.a1
pyrus_communis	pycom01g10470 pycom07g14320
rosa_chinensis	RchiOBHm_Chr1g0358701
rosa_laevigata	RLG00000027934
rosa_multiflora	Rmu_sc0011191.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297690
rosa_rugosa	Rorug01G0264400 Rorug01G0264500
rosa_samantha	Rh1AG278900 Rh1BG245500 Rh1CG262400 Rh1DG273800
rosa_wichuraiana	Rw1G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1508
Acc65I	GGTACC	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	678
AciI	CCGC	2 cut(s)	577, 1031
AclWI	GGATC	3 cut(s)	164, 491, 740
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	2 cut(s)	512, 1249
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	4 cut(s)	355, 370, 489, 680
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	6 cut(s)	166, 536, 608, 1141, 1384, 1403
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	1320
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AleI	CACNNNNGTG	1 cut(s)	789
AluBI	AGCT	6 cut(s)	17, 40, 91, 703, 789, 1478
AluI	AGCT	6 cut(s)	17, 40, 91, 703, 789, 1478
Alw26I	GTCTC	2 cut(s)	691, 1214
AlwI	GGATC	3 cut(s)	164, 491, 740
AoxI	GGCC	3 cut(s)	11, 879, 1391
ApeKI	GCWGC	3 cut(s)	95, 470, 708
ApoI	RAATTY	2 cut(s)	512, 1249
ArsI	GACNNNNNNTTYG	2 cut(s)	1106, 1138
Asp718I	GGTACC	1 cut(s)	678
AspLEI	GCGC	2 cut(s)	241, 796
AspS9I	GGNCC	1 cut(s)	1391
AsuHPI	GGTGA	1 cut(s)	1240
BanI	GGYRCC	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	979
BbsI	GAAGAC	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	107, 482, 695
BccI	CCATC	5 cut(s)	53, 182, 375, 606, 940
BceAI	ACGGC	1 cut(s)	1044
BciT130I	CCWGG	1 cut(s)	1322
BclI	TGATCA	2 cut(s)	1230, 1263
BcoDI	GTCTC	2 cut(s)	691, 1214
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	4 cut(s)	96, 471, 578, 709
BlsI	GCNGC	4 cut(s)	97, 472, 579, 710
Bme1390I	CCNGG	1 cut(s)	1322
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	1391
BmiI	GGNNCC	3 cut(s)	670, 680, 1392
BmrFI	CCNGG	1 cut(s)	1322
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	2 cut(s)	13, 946
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	1173
BsaAI	YACGTR	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	1173
BsaHI	GRCGYC	1 cut(s)	580
BsaJI	CCNNGG	1 cut(s)	1321
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	4 cut(s)	602, 961, 1069, 1394
Bse3DI	GCAATG	3 cut(s)	394, 453, 1104
Bse8I	GATNNNNATC	1 cut(s)	1173
BseBI	CCWGG	1 cut(s)	1322
BseCI	ATCGAT	1 cut(s)	1173
BseDI	CCNNGG	1 cut(s)	1321
BseGI	GGATG	5 cut(s)	351, 486, 645, 850, 937
BseJI	GATNNNNATC	1 cut(s)	1173
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	3 cut(s)	394, 453, 1104
BseMII	CTCAG	3 cut(s)	980, 1386, 1517
BseNI	ACTGG	4 cut(s)	602, 961, 1069, 1394
BseXI	GCAGC	3 cut(s)	107, 482, 695
BseYI	CCCAGC	1 cut(s)	711
BsgI	GTGCAG	2 cut(s)	767, 1124
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	13, 881, 1393
BshNI	GGYRCC	1 cut(s)	678
BshVI	ATCGAT	1 cut(s)	1173
BsiEI	CGRYCG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	2 cut(s)	691, 1214
BsmFI	GGGAC	1 cut(s)	838
BsnI	GGCC	3 cut(s)	13, 881, 1393
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp1407I	TGTACA	3 cut(s)	353, 368, 487
Bsp143I	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
BspACI	CCGC	2 cut(s)	577, 1031
BspANI	GGCC	3 cut(s)	13, 881, 1393
BspCNI	CTCAG	3 cut(s)	981, 1385, 1518
BspDI	ATCGAT	1 cut(s)	1173
BspLI	GGNNCC	3 cut(s)	670, 680, 1392
BspPI	GGATC	3 cut(s)	164, 491, 740
BspT107I	GGYRCC	1 cut(s)	678
BsrDI	GCAATG	3 cut(s)	394, 453, 1104
BsrGI	TGTACA	3 cut(s)	353, 368, 487
BsrI	ACTGG	4 cut(s)	602, 961, 1069, 1394
BssECI	CCNNGG	1 cut(s)	1321
BssMI	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
BssNI	GRCGYC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	1322
Bst4CI	ACNGT	4 cut(s)	79, 1077, 1228, 1298
Bst6I	CTCTTC	5 cut(s)	371, 443, 453, 524, 1373
BstACI	GRCGYC	1 cut(s)	580
BstAPI	GCANNNNNTGC	1 cut(s)	393
BstAUI	TGTACA	3 cut(s)	353, 368, 487
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	15, 93
BstDEI	CTNAG	7 cut(s)	303, 946, 989, 1013, 1209, 1372, 1526
BstF5I	GGATG	5 cut(s)	351, 486, 645, 850, 937
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	241, 796
BstKTI	GATC	9 cut(s)	10, 172, 499, 748, 1177, 1204, 1233, 1266, 1303
BstMAI	GTCTC	2 cut(s)	691, 1214
BstMBI	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 263, 393, 1475
BstNI	CCWGG	1 cut(s)	1322
BstSCI	CCNGG	1 cut(s)	1320
BstSFI	CTRYAG	1 cut(s)	322
BstSNI	TACGTA	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	107, 482, 695
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
Bsu15I	ATCGAT	1 cut(s)	1173
BsuRI	GGCC	3 cut(s)	13, 881, 1393
BsuTUI	ATCGAT	1 cut(s)	1173
BtgZI	GCGATG	1 cut(s)	918
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	5 cut(s)	351, 486, 645, 850, 937
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	33, 1073, 1451
Cac8I	GCNNGC	2 cut(s)	15, 93
CfoI	GCGC	2 cut(s)	241, 796
Cfr13I	GGNCC	1 cut(s)	1391
ClaI	ATCGAT	1 cut(s)	1173
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	4 cut(s)	354, 369, 488, 679
CviAII	CATG	4 cut(s)	147, 1069, 1267, 1357
CviQI	GTAC	4 cut(s)	354, 369, 488, 679
DdeI	CTNAG	7 cut(s)	303, 946, 989, 1013, 1209, 1372, 1526
DpnI	GATC	9 cut(s)	9, 171, 498, 747, 1176, 1203, 1232, 1265, 1302
DpnII	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
DraI	TTTAAA	1 cut(s)	1254
DrdI	GACNNNNNNGTC	1 cut(s)	1508
DseDI	GACNNNNNNGTC	1 cut(s)	1508
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	5 cut(s)	371, 443, 453, 524, 1373
EarI	CTCTTC	5 cut(s)	371, 443, 453, 524, 1373
EciI	GGCGGA	1 cut(s)	1046
Eco105I	TACGTA	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	881
Eco24I	GRGCYC	1 cut(s)	979
Eco32I	GATATC	2 cut(s)	1056, 1171
EcoRII	CCWGG	1 cut(s)	1320
EcoRV	GATATC	2 cut(s)	1056, 1171
EcoT38I	GRGCYC	1 cut(s)	979
FaeI	CATG	4 cut(s)	150, 1072, 1270, 1360
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	4 cut(s)	146, 1068, 1266, 1356
FauNDI	CATATG	1 cut(s)	1134
FbaI	TGATCA	2 cut(s)	1230, 1263
Fnu4HI	GCNGC	4 cut(s)	96, 471, 578, 709
FokI	GGATG	5 cut(s)	358, 493, 632, 857, 924
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	4 cut(s)	96, 471, 578, 709
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	2 cut(s)	240, 795
GluI	GCNGC	4 cut(s)	96, 471, 578, 709
GsaI	CCCAGC	1 cut(s)	715
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	13, 881, 1393
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	2 cut(s)	241, 796
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	150, 1072, 1270, 1360
Hin6I	GCGC	2 cut(s)	239, 794
HinP1I	GCGC	2 cut(s)	239, 794
HincII	GTYRAC	1 cut(s)	1439
HindII	GTYRAC	1 cut(s)	1439
HinfI	GANTC	4 cut(s)	566, 866, 1109, 1376
HphI	GGTGA	1 cut(s)	1240
Hpy166II	GTNNAC	1 cut(s)	1439
Hpy188I	TCNGA	7 cut(s)	696, 919, 990, 1375, 1484, 1498, 1527
Hpy188III	TCNNGA	3 cut(s)	50, 749, 1304
Hpy8I	GTNNAC	1 cut(s)	1439
HpyAV	CCTTC	7 cut(s)	47, 652, 682, 692, 815, 892, 1381
HpyCH4III	ACNGT	4 cut(s)	79, 1077, 1228, 1298
HpyCH4IV	ACGT	2 cut(s)	43, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 263, 393, 1475
HpyF3I	CTNAG	7 cut(s)	303, 946, 989, 1013, 1209, 1372, 1526
HpySE526I	ACGT	2 cut(s)	43, 398
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	4 cut(s)	150, 1072, 1270, 1360
HspAI	GCGC	2 cut(s)	239, 794
KpnI	GGTACC	1 cut(s)	682
Ksp22I	TGATCA	2 cut(s)	1230, 1263
Kzo9I	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	3 cut(s)	107, 482, 695
LweI	GCATC	2 cut(s)	13, 946
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	2 cut(s)	43, 398
MalI	GATC	9 cut(s)	9, 171, 498, 747, 1176, 1203, 1232, 1265, 1302
MboI	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
MfeI	CAATTG	2 cut(s)	33, 1154
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	979
MluCI	AATT	9 cut(s)	33, 233, 491, 512, 716, 848, 1154, 1249, 1431
MlyI	GAGTC	2 cut(s)	1118, 1385
MnlI	CCTC	8 cut(s)	56, 320, 324, 335, 446, 533, 951, 1208
MseI	TTAA	3 cut(s)	411, 572, 1253
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	789
MspR9I	CCNGG	1 cut(s)	1322
MunI	CAATTG	2 cut(s)	33, 1154
MvaI	CCWGG	1 cut(s)	1322
MwoI	GCNNNNNNNGC	4 cut(s)	23, 263, 393, 1475
NdeI	CATATG	1 cut(s)	1134
NdeII	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
NlaIII	CATG	4 cut(s)	150, 1072, 1270, 1360
NlaIV	GGNNCC	3 cut(s)	670, 680, 1392
OliI	CACNNNNGTG	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	881
PfeI	GAWTC	2 cut(s)	566, 866
PkrI	GCNGC	4 cut(s)	97, 472, 579, 710
Ple19I	CGATCG	1 cut(s)	10
PleI	GAGTC	2 cut(s)	1117, 1384
PpsI	GAGTC	2 cut(s)	1117, 1384
Ppu21I	YACGTR	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	1320
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	1320
PspN4I	GGNNCC	3 cut(s)	670, 680, 1392
PspPI	GGNCC	1 cut(s)	1391
PsuI	RGATCY	1 cut(s)	496
PvuI	CGATCG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	789
RsaI	GTAC	4 cut(s)	355, 370, 489, 680
RsaNI	GTAC	4 cut(s)	354, 369, 488, 679
RseI	CAYNNNNRTG	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	411, 572, 1253
SatI	GCNGC	4 cut(s)	96, 471, 578, 709
Sau3AI	GATC	9 cut(s)	7, 169, 496, 745, 1174, 1201, 1230, 1263, 1300
Sau96I	GGNCC	1 cut(s)	1391
SchI	GAGTC	2 cut(s)	1118, 1385
ScrFI	CCNGG	1 cut(s)	1322
SduI	GDGCHC	1 cut(s)	979
SfaNI	GCATC	2 cut(s)	13, 946
SfcI	CTRYAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	789
SnaBI	TACGTA	1 cut(s)	44
Sse9I	AATT	9 cut(s)	33, 233, 491, 512, 716, 848, 1154, 1249, 1431
SseBI	AGGCCT	1 cut(s)	881
SsiI	CCGC	2 cut(s)	577, 1031
SspMI	CTAG	1 cut(s)	507
StuI	AGGCCT	1 cut(s)	881
StyD4I	CCNGG	1 cut(s)	1320
TaaI	ACNGT	4 cut(s)	79, 1077, 1228, 1298
TaiI	ACGT	2 cut(s)	46, 401
TaqI	TCGA	5 cut(s)	259, 885, 1173, 1187, 1200
TasI	AATT	9 cut(s)	33, 233, 491, 512, 716, 848, 1154, 1249, 1431
TatI	WGTACW	3 cut(s)	353, 368, 487
TauI	GCSGC	1 cut(s)	580
TfiI	GAWTC	2 cut(s)	566, 866
Tru1I	TTAA	3 cut(s)	411, 572, 1253
Tru9I	TTAA	3 cut(s)	411, 572, 1253
TscAI	CASTG	3 cut(s)	33, 1080, 1458
TseI	GCWGC	3 cut(s)	95, 470, 708
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	3 cut(s)	33, 1080, 1458
XapI	RAATTY	2 cut(s)	512, 1249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.