Rw1G024750

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007653
Physical Location & Seq
Forward (+)
51118764 .. 51123049
4286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024750.1

Sequence Viewer

Length: 1197 bp
ATGGCGGCTTCAAGGCCGGTCTCGCCTTCGTGGATGAGCACAGCAGCGAGCAGAGTTGATGCCAATTTCAGAGAAAGCAAAGAACAACAACAACAAAAACAGAGGCGGCAGCAGCAGAACCAATCTGTTCCCATTCCTGATGCCAATTTGAGTTTCGGAGAGAGGGCCTTGTCTGCTGCTGGTGCTGCTTTTGTTTCCGCGATTCTCGTGAACCCTCTCGATGTTGCCAAGACAAGGTTGCAAGCGCAGGCTGCCGGAGTACCTTACCAGGGCCTATGTGCTACGCCTTGCATTGAAACAAACACGATGCTTCCAGATTTAAGATCATCTGCGCTACGCACACCTTCGCTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAACCAGTATAAAGGAACACTGGATGTGCTGTTGAAAGTCACACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTAACATTGGCCATACCAACTGTGGGGATCTACATGCCTTGTTATGACATTTTCCGCAATTTGATGGAAGAGTTCACAACTCAGAATGCACCAAATCTAACACCATATGTCCCATTAGTTGCTGGGTCATTAGCACGATCATTGGCTTGTGTCTCTTGTTACCCTATTGAACTGGCAAGGACACGCATGCAGGCCTTCAAGCAAACCCAAGCTGGTGTTAAGCTTCCAGGAGTTTGGGGAACGCTGACTGGGGCCATCAACCCTGTCAAGAGTACAAACCCCCTTCATAACTTACAAAACTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGCTCGTGATGTTCCTTTTTCTGCAATCTGTTGGTCAACTCTTGAGCCAATAAGGCGCAGAATTCTTGGTCTGGTAGGTGATGAACCTAGTGCAGCCACTATCGTTGGGGCAAATTTCTCTGCTGGATTTGTTGCAGGAAGTCTTGCAGCTGCTGCTACATGTCCGCTAGATGTGGCCAAAACCCGACGACAGATAGAGAAGGATCCTACAAGGGCATTGAAGATGACAACAAGACAAACTTTGCTTGAGATTTGGAGGGATGGAGGAATGAAGGGATTGTTTATGGGAATTGGTCCACGTGTTGGTCGAGCTGGCCCTTCAGTTGGGATTGTTGTCTCCTTTTATGAAGTTGTCAAGTATGCTATTCATTATAGACAGCTGAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

398

Amino Acids

43.3

Weight (kDa)

9.72

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 50 - 88 4.4e-06 Mitochondrial carrier protein
Mito_carr PF00153 131 - 180 1.4e-07 Mitochondrial carrier protein
Mito_carr PF00153 190 - 290 1.9e-10 Mitochondrial carrier protein
Mito_carr PF00153 305 - 391 2.2e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1109
AccII CGCG 1 cut(s) 200
AciI CCGC 5 cut(s) 5, 106, 198, 526, 971
AclWI GGATC 5 cut(s) 351, 364, 506, 1004, 1017
AcoI YGGCCR 2 cut(s) 480, 981
AcsI RAATTY 2 cut(s) 867, 919
AcuI CTGAAG 1 cut(s) 1110
AcvI CACGTG 1 cut(s) 1106
AfaI GTAC 2 cut(s) 261, 745
AfiI CCNNNNNNNGG 5 cut(s) 234, 269, 494, 1109, 1130
AflIII ACRYGT 3 cut(s) 425, 965, 1105
AgsI TTSAA 6 cut(s) 12, 296, 418, 641, 670, 1027
AjiI CACGTC 1 cut(s) 428
AjnI CCWGG 2 cut(s) 267, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 7 cut(s) 471, 683, 694, 800, 956, 1118, 1186
AluI AGCT 7 cut(s) 471, 683, 694, 800, 956, 1118, 1186
Alw21I GWGCWC 2 cut(s) 41, 802
Alw26I GTCTC 4 cut(s) 25, 439, 628, 1147
AlwI GGATC 5 cut(s) 351, 364, 506, 1004, 1017
AlwNI CAGNNNCTG 1 cut(s) 959
AoxI GGCC 9 cut(s) 14, 165, 271, 480, 663, 723, 790, 981, 1120
ApoI RAATTY 2 cut(s) 867, 919
AspLEI GCGC 3 cut(s) 247, 334, 864
AspS9I GGNCC 5 cut(s) 165, 271, 723, 1100, 1121
AsuHPI GGTGA 1 cut(s) 896
AvaII GGWCC 1 cut(s) 1100
BalI TGGCCA 2 cut(s) 482, 983
BamHI GGATCC 2 cut(s) 356, 1009
BanII GRGCYC 1 cut(s) 802
BauI CACGAG 2 cut(s) 206, 810
BbrPI CACGTG 1 cut(s) 1106
Bbv12I GWGCWC 2 cut(s) 41, 802
BccI CCATC 3 cut(s) 529, 734, 1061
BciT130I CCWGG 2 cut(s) 269, 699
BcoDI GTCTC 4 cut(s) 25, 439, 628, 1147
BfaI CTAG 2 cut(s) 894, 974
BglI GCCNNNNNGGC 1 cut(s) 859
Bme1390I CCNGG 2 cut(s) 269, 699
Bme18I GGWCC 1 cut(s) 1100
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 5 cut(s) 165, 271, 723, 1100, 1121
BmiI GGNNCC 4 cut(s) 358, 460, 724, 1011
BmrFI CCNGG 2 cut(s) 269, 699
BmrI ACTGGG 1 cut(s) 729
BmsI GCATC 4 cut(s) 49, 130, 297, 786
BmuI ACTGGG 1 cut(s) 729
BpmI CTGGAG 1 cut(s) 472
BpuEI CTTGAG 2 cut(s) 869, 1073
BsaAI YACGTR 1 cut(s) 1106
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 268, 793
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 269, 494, 1109, 1130
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 5 cut(s) 388, 408, 648, 724, 793
BseBI CCWGG 2 cut(s) 269, 699
BseDI CCNNGG 2 cut(s) 268, 793
BseGI GGATG 3 cut(s) 39, 412, 1072
BseLI CCNNNNNNNGG 5 cut(s) 234, 269, 494, 1109, 1130
BseMII CTCAG 2 cut(s) 566, 1178
BseNI ACTGG 5 cut(s) 388, 408, 648, 724, 793
BseYI CCCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 9 cut(s) 16, 167, 273, 482, 665, 725, 792, 983, 1122
BsiHKAI GWGCWC 2 cut(s) 41, 802
BsiSI CCGG 2 cut(s) 17, 255
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 5 cut(s) 234, 269, 494, 1109, 1130
BsmAI GTCTC 4 cut(s) 25, 439, 628, 1147
BsmFI GGGAC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 9 cut(s) 16, 167, 273, 482, 665, 725, 792, 983, 1122
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 41, 802
Bsp143I GATC 5 cut(s) 323, 356, 498, 608, 1009
BspACI CCGC 5 cut(s) 5, 106, 198, 526, 971
BspANI GGCC 9 cut(s) 16, 167, 273, 482, 665, 725, 792, 983, 1122
BspCNI CTCAG 2 cut(s) 565, 1179
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 4 cut(s) 358, 460, 724, 1011
BspPI GGATC 5 cut(s) 351, 364, 506, 1004, 1017
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 5 cut(s) 388, 408, 648, 724, 793
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 268, 793
BssMI GATC 5 cut(s) 323, 356, 498, 608, 1009
BssSI CACGAG 2 cut(s) 206, 810
BssT1I CCWWGG 1 cut(s) 793
Bst2BI CACGAG 2 cut(s) 206, 810
Bst2UI CCWGG 2 cut(s) 269, 699
Bst4CI ACNGT 2 cut(s) 367, 493
Bst6I CTCTTC 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 959
BstBAI YACGTR 1 cut(s) 1106
BstC8I GCNNGC 7 cut(s) 49, 243, 249, 469, 659, 663, 1120
BstDEI CTNAG 2 cut(s) 552, 1187
BstF5I GGATG 3 cut(s) 39, 412, 1072
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 3 cut(s) 247, 334, 864
BstKTI GATC 5 cut(s) 326, 359, 501, 611, 1012
BstMAI GTCTC 4 cut(s) 25, 439, 628, 1147
BstMBI GATC 5 cut(s) 323, 356, 498, 608, 1009
BstMWI GCNNNNNNNGC 9 cut(s) 22, 112, 173, 182, 185, 251, 806, 859, 959
BstNI CCWGG 2 cut(s) 269, 699
BstNSI RCATGY 3 cut(s) 508, 661, 969
BstSCI CCNGG 2 cut(s) 267, 697
BstUI CGCG 1 cut(s) 200
BstX2I RGATCY 3 cut(s) 356, 498, 1009
BstXI CCANNNNNNTGG 1 cut(s) 705
BstYI RGATCY 3 cut(s) 356, 498, 1009
BsuRI GGCC 9 cut(s) 16, 167, 273, 482, 665, 725, 792, 983, 1122
BtrI CACGTC 1 cut(s) 428
BtsCI GGATG 3 cut(s) 39, 412, 1072
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 7 cut(s) 49, 243, 249, 469, 659, 663, 1120
CaiI CAGNNNCTG 1 cut(s) 959
CfoI GCGC 3 cut(s) 247, 334, 864
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 5 cut(s) 165, 271, 723, 1100, 1121
Csp6I GTAC 2 cut(s) 260, 744
CspCI CAANNNNNGTGG 2 cut(s) 892, 927
CviAII CATG 3 cut(s) 505, 658, 966
CviQI GTAC 2 cut(s) 260, 744
DdeI CTNAG 2 cut(s) 552, 1187
DpnI GATC 5 cut(s) 325, 358, 500, 610, 1011
DpnII GATC 5 cut(s) 323, 356, 498, 608, 1009
EaeI YGGCCR 2 cut(s) 480, 981
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Ecl136II GAGCTC 1 cut(s) 800
Eco130I CCWWGG 1 cut(s) 793
Eco147I AGGCCT 1 cut(s) 665
Eco24I GRGCYC 1 cut(s) 802
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 1100
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 1110
Eco72I CACGTG 1 cut(s) 1106
EcoICRI GAGCTC 1 cut(s) 800
EcoO109I RGGNCCY 2 cut(s) 165, 271
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 2 cut(s) 267, 697
EcoT14I CCWWGG 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 793
FaeI CATG 3 cut(s) 508, 661, 969
FalI AAGNNNNNCTT 2 cut(s) 1030, 1062
FaqI GGGAC 1 cut(s) 566
FatI CATG 3 cut(s) 504, 657, 965
FauNDI CATATG 1 cut(s) 577
FokI GGATG 3 cut(s) 46, 419, 1079
FriOI GRGCYC 1 cut(s) 802
FspBI CTAG 2 cut(s) 894, 974
GlaI GCGC 3 cut(s) 246, 333, 863
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 9 cut(s) 16, 167, 273, 482, 665, 725, 792, 983, 1122
HapII CCGG 2 cut(s) 17, 255
HhaI GCGC 3 cut(s) 247, 334, 864
Hin1II CATG 3 cut(s) 508, 661, 969
Hin6I GCGC 3 cut(s) 245, 332, 862
HinP1I GCGC 3 cut(s) 245, 332, 862
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HindIII AAGCTT 2 cut(s) 469, 692
HinfI GANTC 2 cut(s) 202, 447
HpaII CCGG 2 cut(s) 17, 255
HphI GGTGA 1 cut(s) 896
Hpy166II GTNNAC 5 cut(s) 211, 546, 786, 843, 1103
Hpy188I TCNGA 3 cut(s) 71, 158, 555
Hpy188III TCNNGA 9 cut(s) 137, 208, 218, 314, 431, 451, 739, 812, 848
Hpy8I GTNNAC 5 cut(s) 211, 546, 786, 843, 1103
Hpy99I CGWCG 1 cut(s) 996
HpyAV CCTTC 8 cut(s) 36, 354, 428, 676, 764, 1000, 1072, 1134
HpyCH4III ACNGT 2 cut(s) 367, 493
HpyCH4IV ACGT 2 cut(s) 427, 1105
HpyCH4V TGCA 9 cut(s) 241, 291, 467, 560, 661, 830, 899, 941, 953
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 112, 173, 182, 185, 251, 806, 859, 959
HpyF3I CTNAG 2 cut(s) 552, 1187
HpySE526I ACGT 2 cut(s) 427, 1105
Hsp92II CATG 3 cut(s) 508, 661, 969
HspAI GCGC 3 cut(s) 245, 332, 862
Kzo9I GATC 5 cut(s) 323, 356, 498, 608, 1009
LmnI GCTCC 1 cut(s) 797
LweI GCATC 4 cut(s) 49, 130, 297, 786
MaeI CTAG 2 cut(s) 894, 974
MaeII ACGT 2 cut(s) 427, 1105
MaeIII GTNAC 4 cut(s) 383, 421, 629, 1190
MalI GATC 5 cut(s) 325, 358, 500, 610, 1011
MboI GATC 5 cut(s) 323, 356, 498, 608, 1009
MboII GAAGA 2 cut(s) 551, 1039
MflI RGATCY 3 cut(s) 356, 498, 1009
MhlI GDGCHC 2 cut(s) 41, 802
MlsI TGGCCA 2 cut(s) 482, 983
MluCI AATT 7 cut(s) 64, 145, 351, 529, 867, 919, 1095
MluNI TGGCCA 2 cut(s) 482, 983
MlyI GAGTC 1 cut(s) 441
MnlI CCTC 6 cut(s) 96, 156, 225, 449, 1056, 1064
Mox20I TGGCCA 2 cut(s) 482, 983
MscI TGGCCA 2 cut(s) 482, 983
MseI TTAA 3 cut(s) 320, 473, 690
MslI CAYNNNNRTG 1 cut(s) 379
Msp20I TGGCCA 2 cut(s) 482, 983
MspA1I CMGCKG 2 cut(s) 956, 1186
MspI CCGG 2 cut(s) 17, 255
MspR9I CCNGG 2 cut(s) 269, 699
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 2 cut(s) 269, 699
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 9 cut(s) 22, 112, 173, 182, 185, 251, 806, 859, 959
NdeI CATATG 1 cut(s) 577
NdeII GATC 5 cut(s) 323, 356, 498, 608, 1009
NlaIII CATG 3 cut(s) 508, 661, 969
NlaIV GGNNCC 4 cut(s) 358, 460, 724, 1011
NmuCI GTSAC 2 cut(s) 421, 1190
NspI RCATGY 3 cut(s) 508, 661, 969
PaeI GCATGC 1 cut(s) 661
PceI AGGCCT 1 cut(s) 665
PciI ACATGT 1 cut(s) 965
PcsI WCGNNNNNNNCGW 1 cut(s) 1111
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 1109
PfoI TCCNGGA 1 cut(s) 697
PleI GAGTC 1 cut(s) 441
PmaCI CACGTG 1 cut(s) 1106
PmlI CACGTG 1 cut(s) 1106
PpsI GAGTC 1 cut(s) 441
Ppu21I YACGTR 1 cut(s) 1106
PscI ACATGT 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 802
Psp6I CCWGG 2 cut(s) 267, 697
PspCI CACGTG 1 cut(s) 1106
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 267, 697
PspN4I GGNNCC 4 cut(s) 358, 460, 724, 1011
PspPI GGNCC 5 cut(s) 165, 271, 723, 1100, 1121
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 3 cut(s) 356, 498, 1009
PvuII CAGCTG 2 cut(s) 956, 1186
RsaI GTAC 2 cut(s) 261, 745
RsaNI GTAC 2 cut(s) 260, 744
RseI CAYNNNNRTG 1 cut(s) 379
SacI GAGCTC 1 cut(s) 802
SaqAI TTAA 3 cut(s) 320, 473, 690
Sau3AI GATC 5 cut(s) 323, 356, 498, 608, 1009
Sau96I GGNCC 5 cut(s) 165, 271, 723, 1100, 1121
SchI GAGTC 1 cut(s) 441
ScrFI CCNGG 2 cut(s) 269, 699
SduI GDGCHC 2 cut(s) 41, 802
SfaNI GCATC 4 cut(s) 49, 130, 297, 786
SinI GGWCC 1 cut(s) 1100
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 2 cut(s) 848, 1052
SmoI CTYRAG 2 cut(s) 848, 1052
SphI GCATGC 1 cut(s) 661
Sse9I AATT 7 cut(s) 64, 145, 351, 529, 867, 919, 1095
SseBI AGGCCT 1 cut(s) 665
SsiI CCGC 5 cut(s) 5, 106, 198, 526, 971
SspMI CTAG 2 cut(s) 894, 974
SstI GAGCTC 1 cut(s) 802
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 2 cut(s) 267, 697
StyI CCWWGG 1 cut(s) 793
TaaI ACNGT 2 cut(s) 367, 493
TaiI ACGT 2 cut(s) 430, 1108
TaqI TCGA 2 cut(s) 219, 1114
TasI AATT 7 cut(s) 64, 145, 351, 529, 867, 919, 1095
TatI WGTACW 1 cut(s) 743
TauI GCSGC 2 cut(s) 8, 109
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 3 cut(s) 320, 473, 690
Tru9I TTAA 3 cut(s) 320, 473, 690
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 2 cut(s) 421, 1190
Tsp45I GTSAC 2 cut(s) 421, 1190
TspDTI ATGAA 5 cut(s) 746, 903, 1091, 1163, 1167
TspRI CASTG 1 cut(s) 408
Van91I CCANNNNNTGG 1 cut(s) 1109
VpaK11BI GGWCC 1 cut(s) 1100
XapI RAATTY 2 cut(s) 867, 919
XceI RCATGY 3 cut(s) 508, 661, 969
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XspI CTAG 2 cut(s) 894, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.