Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011191.1

Orthogroup ID

OG0007653

Physical Location & Seq

Genomic Coordinates Reverse (-)

18403 .. 21300

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011191.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgcattatttgttgcattgtcttcagacaaggttgcaagcgcaggctgccggagtaccttaccagggactatgtgctacgccttgcattgaaacaaacacgatgcttccagatttaagatcatctgcgctacgcacaccttcgctaattggatccaagactgtctgcccaccagaatgtaaccagtataaaggaacactggatgtgctgttgaaagtcacacgtcaggaaggattttggagactctggagaggaaccaatgcaagcttaacattggccataccaactgtggggatctacatgccttgttatgacattttccgcaatttgatggaagagttcacaactcagaatgcaccaaatctaacaccatatgtcccattagttgctgggtcattagcacgatcattggcttgtgtctcttgttaccctattgaactggcaaggacacgcatgcaggccttcaagcaaacccaagctggtgttaagcttccaggagtttggggaacgctgactggggccatcaaccctgtcaagagtacaaacccccttcataacttacaaaagtatcgcatcttgtggactggccttggagctcaacttgctcgtgatgttcctttttctgcaatctgttggtcaactcttgagccaataaggcgcagaattcttggtctcgtaggtgatgaacctagtgcagccactatccttggggcaaatttctctgctggatttgttgcaggaagtcttgcagctgccgctacatgtccgctagatgtgaccaaaacccgacgacagatagagaaggatcctacaagggcattgaagatgacaacaagacaaactttgcttgagatttggagggatggaggaatgaagggattgtttatgggaattggtccacgtgttggtcgagctggcccttcagttggaattgttgtctccttttatgaagttgtcaagtatgctattcattatagacagctgactgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

330

Amino Acids

36.2

Weight (kDa)

9.56

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46320 AT2G46320 AT2G46320 AT2G46320 AT2G46320
fragaria_vesca	FvH4_7g15880 FvH4_7g15880 FvH4_7g15880
malus_domestica	MD01G1075800.v1.1 MD07G1144600.v1.1
prunus_persica	Prupe.2G183400_v2.0.a1
pyrus_communis	pycom01g10470 pycom07g14320
rosa_chinensis	RchiOBHm_Chr1g0358701
rosa_laevigata	RLG00000027934
rosa_multiflora	Rmu_sc0011191.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297690
rosa_rugosa	Rorug01G0264400 Rorug01G0264500
rosa_samantha	Rh1AG278900 Rh1BG245500 Rh1CG262400 Rh1DG273800
rosa_wichuraiana	Rw1G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	905
AciI	CCGC	3 cut(s)	322, 756, 767
AclWI	GGATC	5 cut(s)	147, 160, 302, 800, 813
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	663, 715
AcuI	CTGAAG	2 cut(s)	8, 906
AcvI	CACGTG	1 cut(s)	902
AfaI	GTAC	2 cut(s)	57, 541
AfiI	CCNNNNNNNGG	4 cut(s)	65, 290, 905, 926
AflIII	ACRYGT	3 cut(s)	221, 761, 901
AgsI	TTSAA	5 cut(s)	92, 214, 437, 466, 823
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	63, 493
AluBI	AGCT	7 cut(s)	267, 479, 490, 596, 752, 914, 982
AluI	AGCT	7 cut(s)	267, 479, 490, 596, 752, 914, 982
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	4 cut(s)	235, 424, 677, 943
AlwI	GGATC	5 cut(s)	147, 160, 302, 800, 813
AoxI	GGCC	5 cut(s)	276, 459, 519, 586, 916
ApeKI	GCWGC	4 cut(s)	47, 695, 749, 752
ApoI	RAATTY	2 cut(s)	663, 715
AspLEI	GCGC	3 cut(s)	43, 130, 660
AspS9I	GGNCC	3 cut(s)	519, 896, 917
AsuHPI	GGTGA	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	896
BaeI	ACNNNNGTAYC	2 cut(s)	551, 584
BalI	TGGCCA	1 cut(s)	278
BamHI	GGATCC	2 cut(s)	152, 805
BanII	GRGCYC	1 cut(s)	598
BauI	CACGAG	1 cut(s)	606
BbrPI	CACGTG	1 cut(s)	902
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	4 cut(s)	34, 707, 739, 761
BccI	CCATC	3 cut(s)	325, 530, 857
BciT130I	CCWGG	2 cut(s)	65, 495
BcoDI	GTCTC	4 cut(s)	235, 424, 677, 943
BfaI	CTAG	2 cut(s)	690, 770
BglI	GCCNNNNNGGC	1 cut(s)	655
BisI	GCNGC	5 cut(s)	48, 696, 750, 753, 756
BlsI	GCNGC	5 cut(s)	49, 697, 751, 754, 757
Bme1390I	CCNGG	2 cut(s)	65, 495
Bme18I	GGWCC	1 cut(s)	896
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	519, 896, 917
BmiI	GGNNCC	4 cut(s)	154, 256, 520, 807
BmrFI	CCNGG	2 cut(s)	65, 495
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	2 cut(s)	93, 582
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	2 cut(s)	665, 869
BsaAI	YACGTR	1 cut(s)	902
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	3 cut(s)	64, 589, 706
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 290, 905, 926
Bse1I	ACTGG	5 cut(s)	184, 204, 444, 520, 589
BseBI	CCWGG	2 cut(s)	65, 495
BseDI	CCNNGG	3 cut(s)	64, 589, 706
BseGI	GGATG	2 cut(s)	208, 868
BseLI	CCNNNNNNNGG	4 cut(s)	65, 290, 905, 926
BseMII	CTCAG	2 cut(s)	362, 978
BseNI	ACTGG	5 cut(s)	184, 204, 444, 520, 589
BseXI	GCAGC	4 cut(s)	34, 707, 739, 761
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	5 cut(s)	278, 461, 521, 588, 918
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	81, 362
BslI	CCNNNNNNNGG	4 cut(s)	65, 290, 905, 926
BsmAI	GTCTC	4 cut(s)	235, 424, 677, 943
BsmFI	GGGAC	2 cut(s)	81, 362
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	5 cut(s)	278, 461, 521, 588, 918
Bso31I	GGTCTC	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	5 cut(s)	119, 152, 294, 404, 805
BspACI	CCGC	3 cut(s)	322, 756, 767
BspANI	GGCC	5 cut(s)	278, 461, 521, 588, 918
BspCNI	CTCAG	2 cut(s)	361, 979
BspLI	GGNNCC	4 cut(s)	154, 256, 520, 807
BspPI	GGATC	5 cut(s)	147, 160, 302, 800, 813
BspTNI	GGTCTC	1 cut(s)	677
BsrI	ACTGG	5 cut(s)	184, 204, 444, 520, 589
BssECI	CCNNGG	3 cut(s)	64, 589, 706
BssMI	GATC	5 cut(s)	119, 152, 294, 404, 805
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	589, 706
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	65, 495
Bst4CI	ACNGT	2 cut(s)	163, 289
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	902
BstC8I	GCNNGC	6 cut(s)	39, 45, 265, 455, 459, 916
BstDEI	CTNAG	2 cut(s)	348, 987
BstF5I	GGATG	2 cut(s)	208, 868
BstHHI	GCGC	3 cut(s)	43, 130, 660
BstKTI	GATC	5 cut(s)	122, 155, 297, 407, 808
BstMAI	GTCTC	4 cut(s)	235, 424, 677, 943
BstMBI	GATC	5 cut(s)	119, 152, 294, 404, 805
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 602, 655, 755
BstNI	CCWGG	2 cut(s)	65, 495
BstNSI	RCATGY	3 cut(s)	304, 457, 765
BstSCI	CCNGG	2 cut(s)	63, 493
BstV1I	GCAGC	4 cut(s)	34, 707, 739, 761
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	3 cut(s)	152, 294, 805
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstYI	RGATCY	3 cut(s)	152, 294, 805
BsuRI	GGCC	5 cut(s)	278, 461, 521, 588, 918
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	208, 868
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	6 cut(s)	39, 45, 265, 455, 459, 916
CfoI	GCGC	3 cut(s)	43, 130, 660
Cfr13I	GGNCC	3 cut(s)	519, 896, 917
Csp6I	GTAC	2 cut(s)	56, 540
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviAII	CATG	3 cut(s)	301, 454, 762
CviQI	GTAC	2 cut(s)	56, 540
DdeI	CTNAG	2 cut(s)	348, 987
DpnI	GATC	5 cut(s)	121, 154, 296, 406, 807
DpnII	GATC	5 cut(s)	119, 152, 294, 404, 805
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	596
Eco130I	CCWWGG	2 cut(s)	589, 706
Eco147I	AGGCCT	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	598
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	896
Eco53kI	GAGCTC	1 cut(s)	596
Eco57I	CTGAAG	2 cut(s)	8, 906
Eco72I	CACGTG	1 cut(s)	902
EcoICRI	GAGCTC	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	63, 493
EcoT14I	CCWWGG	2 cut(s)	589, 706
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	2 cut(s)	589, 706
FaeI	CATG	3 cut(s)	304, 457, 765
FalI	AAGNNNNNCTT	2 cut(s)	826, 858
FaqI	GGGAC	2 cut(s)	81, 362
FatI	CATG	3 cut(s)	300, 453, 761
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	5 cut(s)	48, 696, 750, 753, 756
FokI	GGATG	2 cut(s)	215, 875
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	5 cut(s)	48, 696, 750, 753, 756
FspBI	CTAG	2 cut(s)	690, 770
GlaI	GCGC	3 cut(s)	42, 129, 659
GluI	GCNGC	5 cut(s)	48, 696, 750, 753, 756
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	5 cut(s)	278, 461, 521, 588, 918
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	3 cut(s)	43, 130, 660
Hin1II	CATG	3 cut(s)	304, 457, 765
Hin6I	GCGC	3 cut(s)	41, 128, 658
HinP1I	GCGC	3 cut(s)	41, 128, 658
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HindIII	AAGCTT	2 cut(s)	265, 488
HinfI	GANTC	1 cut(s)	243
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	4 cut(s)	342, 582, 639, 899
Hpy188I	TCNGA	2 cut(s)	27, 351
Hpy188III	TCNNGA	6 cut(s)	110, 227, 247, 535, 608, 644
Hpy8I	GTNNAC	4 cut(s)	342, 582, 639, 899
Hpy99I	CGWCG	1 cut(s)	792
HpyAV	CCTTC	7 cut(s)	150, 224, 472, 560, 796, 868, 930
HpyCH4III	ACNGT	2 cut(s)	163, 289
HpyCH4IV	ACGT	2 cut(s)	223, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 602, 655, 755
HpyF3I	CTNAG	2 cut(s)	348, 987
HpySE526I	ACGT	2 cut(s)	223, 901
Hsp92II	CATG	3 cut(s)	304, 457, 765
HspAI	GCGC	3 cut(s)	41, 128, 658
Kzo9I	GATC	5 cut(s)	119, 152, 294, 404, 805
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	4 cut(s)	34, 707, 739, 761
LweI	GCATC	2 cut(s)	93, 582
MaeI	CTAG	2 cut(s)	690, 770
MaeII	ACGT	2 cut(s)	223, 901
MaeIII	GTNAC	4 cut(s)	179, 217, 425, 775
MalI	GATC	5 cut(s)	121, 154, 296, 406, 807
MboI	GATC	5 cut(s)	119, 152, 294, 404, 805
MboII	GAAGA	3 cut(s)	14, 347, 835
MflI	RGATCY	3 cut(s)	152, 294, 805
MhlI	GDGCHC	1 cut(s)	598
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	6 cut(s)	147, 325, 663, 715, 891, 930
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	907
MnlI	CCTC	3 cut(s)	245, 852, 860
Mox20I	TGGCCA	1 cut(s)	278
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	3 cut(s)	116, 269, 486
MslI	CAYNNNNRTG	1 cut(s)	175
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	2 cut(s)	752, 982
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	65, 495
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	65, 495
MwoI	GCNNNNNNNGC	4 cut(s)	47, 602, 655, 755
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	5 cut(s)	119, 152, 294, 404, 805
NlaIII	CATG	3 cut(s)	304, 457, 765
NlaIV	GGNNCC	4 cut(s)	154, 256, 520, 807
NmuCI	GTSAC	2 cut(s)	217, 775
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	304, 457, 765
PaeI	GCATGC	1 cut(s)	457
PceI	AGGCCT	1 cut(s)	461
PciI	ACATGT	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	907
PctI	GAATGC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	905
PfoI	TCCNGGA	1 cut(s)	493
PkrI	GCNGC	5 cut(s)	49, 697, 751, 754, 757
PleI	GAGTC	1 cut(s)	237
PmaCI	CACGTG	1 cut(s)	902
PmlI	CACGTG	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	902
PscI	ACATGT	1 cut(s)	761
Psp124BI	GAGCTC	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	63, 493
PspCI	CACGTG	1 cut(s)	902
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	2 cut(s)	63, 493
PspN4I	GGNNCC	4 cut(s)	154, 256, 520, 807
PspPI	GGNCC	3 cut(s)	519, 896, 917
PsuI	RGATCY	3 cut(s)	152, 294, 805
PvuII	CAGCTG	2 cut(s)	752, 982
RsaI	GTAC	2 cut(s)	57, 541
RsaNI	GTAC	2 cut(s)	56, 540
RseI	CAYNNNNRTG	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	598
SaqAI	TTAA	3 cut(s)	116, 269, 486
SatI	GCNGC	5 cut(s)	48, 696, 750, 753, 756
Sau3AI	GATC	5 cut(s)	119, 152, 294, 404, 805
Sau96I	GGNCC	3 cut(s)	519, 896, 917
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	65, 495
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	2 cut(s)	93, 582
SinI	GGWCC	1 cut(s)	896
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	644, 848
SmoI	CTYRAG	2 cut(s)	644, 848
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	6 cut(s)	147, 325, 663, 715, 891, 930
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	3 cut(s)	322, 756, 767
SspMI	CTAG	2 cut(s)	690, 770
SstI	GAGCTC	1 cut(s)	598
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	2 cut(s)	63, 493
StyI	CCWWGG	2 cut(s)	589, 706
TaaI	ACNGT	2 cut(s)	163, 289
TaiI	ACGT	2 cut(s)	226, 904
TaqI	TCGA	1 cut(s)	910
TasI	AATT	6 cut(s)	147, 325, 663, 715, 891, 930
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	1 cut(s)	758
Tru1I	TTAA	3 cut(s)	116, 269, 486
Tru9I	TTAA	3 cut(s)	116, 269, 486
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	2 cut(s)	217, 775
TseI	GCWGC	4 cut(s)	47, 695, 749, 752
Tsp45I	GTSAC	2 cut(s)	217, 775
TspDTI	ATGAA	5 cut(s)	542, 699, 887, 959, 963
TspRI	CASTG	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	905
VpaK11BI	GGWCC	1 cut(s)	896
XapI	RAATTY	2 cut(s)	663, 715
XceI	RCATGY	3 cut(s)	304, 457, 765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	2 cut(s)	690, 770
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.