Rh1DG273800

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007653
Physical Location & Seq
Forward (+)
49362257 .. 49366366
4110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG273800.1

Sequence Viewer

Length: 1200 bp
ATGGTGGCTTCAAGGCCGGTCTCGCCTTCGTGGATGAGCACAGCAGCGAGCAGAGTTGATGCCAATTTCAGAGAAAGCAAAGAACAACAACAACAACAAAAACAGAGGCGGCAGCAGCAGAACCAATCTGTTCCCATTCCTGATGCCAATTTGAGTTTCGGAGAGAGGGCTTTGTCTGCTGCTGGTGCTGCTTTTGTTTCCGCGATTCTCGTGAACCCTCTCGATGTTGCCAAGACAAGGTTGCAAGCGCAGGCTGCCGGAGTACCTTACCAGGGCCTATGTGGTACGCCTTGCATTGAAACAAACACGATGCTTCCAGATTTAAGATCATCTGCGCTACGCACACCTTCGCTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAACCAGTATAAAGGAACACTGGATGTGCTGTTGAAAGTCATACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTAACATTGGCCATACCAACTGTGGGGATCTACATGCCTTGTTATGACATTTTCCGCAATTTGATGGAAGAGTTCACAACTCAGAATGCACCAAATCTAACACCATATGTCCCATTAGTTGCTGGGTCATTAGCACGATCATTGGCTTGTGTCTCTTGTTACCCTATTGAACTGGCAAGGACACGCATGCAGGCCTTCAAGCAAACCCAAGCTGGTGTTAAGCTTCCAGGAGTTTGGGGAACGCTGACTGGGGCCATCAACCCTGTCAAGAGTACAAACCCCCTTCATAACTTACAAAACTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGCTCGTGATGTTCCTTTTTCTGCAATCTGTTGGTCAACTCTTGAGCCAATAAGGCACAGAATTCTTGGTCTGGTAGGTGATGAACCTAGTGCAGCCACTATCCTTGGGGCAAATTTCTCTGCTGGATTTGTTGCAGGAAGTCTTGCAGCTGCTGCTACATGTCCGCTAGATGTGGCAAAAACCCGACGACAGATAGAGAAGGATCCTACAAGGGCATTGAAGATGACAACAAGACAAACTTTGCTTGAGATTTGGAGGGATGGAGGAATGAAGGGGTTGTTTATGGGAATTGGTCCACGTGTTGGTCGAGCTGGCCCTTCAGTTGGGATTGTTGTCTCCTTTTATGAAGTTGTCAAGTATGCTATTCATTATAGACAGCTGACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

399

Amino Acids

43.48

Weight (kDa)

9.66

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 51 - 87 5.4e-06 Mitochondrial carrier protein
Mito_carr PF00153 132 - 181 5.3e-08 Mitochondrial carrier protein
Mito_carr PF00153 191 - 290 2.7e-10 Mitochondrial carrier protein
Mito_carr PF00153 306 - 392 2.4e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccII CGCG 1 cut(s) 203
AciI CCGC 4 cut(s) 109, 201, 529, 974
AclWI GGATC 5 cut(s) 354, 367, 509, 1007, 1020
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 2 cut(s) 870, 922
AcuI CTGAAG 1 cut(s) 1113
AcvI CACGTG 1 cut(s) 1109
AfaI GTAC 3 cut(s) 264, 286, 748
AfiI CCNNNNNNNGG 5 cut(s) 237, 272, 497, 1112, 1133
AflIII ACRYGT 2 cut(s) 968, 1108
AgsI TTSAA 6 cut(s) 12, 299, 421, 644, 673, 1030
AjnI CCWGG 2 cut(s) 270, 700
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 7 cut(s) 474, 686, 697, 803, 959, 1121, 1189
AluI AGCT 7 cut(s) 474, 686, 697, 803, 959, 1121, 1189
Alw21I GWGCWC 2 cut(s) 41, 805
Alw26I GTCTC 4 cut(s) 25, 442, 631, 1150
AlwI GGATC 5 cut(s) 354, 367, 509, 1007, 1020
AlwNI CAGNNNCTG 1 cut(s) 962
AoxI GGCC 7 cut(s) 14, 274, 483, 666, 726, 793, 1123
ApoI RAATTY 2 cut(s) 870, 922
AspLEI GCGC 2 cut(s) 250, 337
AspS9I GGNCC 4 cut(s) 274, 726, 1103, 1124
AsuHPI GGTGA 1 cut(s) 899
AvaII GGWCC 1 cut(s) 1103
BalI TGGCCA 1 cut(s) 485
BamHI GGATCC 2 cut(s) 359, 1012
BanII GRGCYC 1 cut(s) 805
BauI CACGAG 2 cut(s) 209, 813
BbrPI CACGTG 1 cut(s) 1109
Bbv12I GWGCWC 2 cut(s) 41, 805
BccI CCATC 3 cut(s) 532, 737, 1064
BciT130I CCWGG 2 cut(s) 272, 702
BcoDI GTCTC 4 cut(s) 25, 442, 631, 1150
BfaI CTAG 2 cut(s) 897, 977
BglI GCCNNNNNGGC 1 cut(s) 862
Bme1390I CCNGG 2 cut(s) 272, 702
Bme18I GGWCC 1 cut(s) 1103
BmgT120I GGNCC 4 cut(s) 274, 726, 1103, 1124
BmiI GGNNCC 4 cut(s) 361, 463, 727, 1014
BmrFI CCNGG 2 cut(s) 272, 702
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 4 cut(s) 49, 133, 300, 789
BmuI ACTGGG 1 cut(s) 732
BpmI CTGGAG 1 cut(s) 475
BpuEI CTTGAG 2 cut(s) 872, 1076
BsaAI YACGTR 1 cut(s) 1109
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 271, 796, 913
Bsc4I CCNNNNNNNGG 5 cut(s) 237, 272, 497, 1112, 1133
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 5 cut(s) 391, 411, 651, 727, 796
BseBI CCWGG 2 cut(s) 272, 702
BseDI CCNNGG 3 cut(s) 271, 796, 913
BseGI GGATG 3 cut(s) 39, 415, 1075
BseLI CCNNNNNNNGG 5 cut(s) 237, 272, 497, 1112, 1133
BseMII CTCAG 2 cut(s) 569, 1185
BseNI ACTGG 5 cut(s) 391, 411, 651, 727, 796
BseYI CCCAGC 1 cut(s) 596
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 7 cut(s) 16, 276, 485, 668, 728, 795, 1125
BsiHKAI GWGCWC 2 cut(s) 41, 805
BsiSI CCGG 2 cut(s) 17, 258
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 5 cut(s) 237, 272, 497, 1112, 1133
BsmAI GTCTC 4 cut(s) 25, 442, 631, 1150
BsmFI GGGAC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 7 cut(s) 16, 276, 485, 668, 728, 795, 1125
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 41, 805
Bsp143I GATC 5 cut(s) 326, 359, 501, 611, 1012
BspACI CCGC 4 cut(s) 109, 201, 529, 974
BspANI GGCC 7 cut(s) 16, 276, 485, 668, 728, 795, 1125
BspCNI CTCAG 2 cut(s) 568, 1186
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 4 cut(s) 361, 463, 727, 1014
BspPI GGATC 5 cut(s) 354, 367, 509, 1007, 1020
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 5 cut(s) 391, 411, 651, 727, 796
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 271, 796, 913
BssMI GATC 5 cut(s) 326, 359, 501, 611, 1012
BssSI CACGAG 2 cut(s) 209, 813
BssT1I CCWWGG 2 cut(s) 796, 913
Bst2BI CACGAG 2 cut(s) 209, 813
Bst2UI CCWGG 2 cut(s) 272, 702
Bst4CI ACNGT 2 cut(s) 370, 496
Bst6I CTCTTC 1 cut(s) 537
BstAPI GCANNNNNTGC 1 cut(s) 962
BstBAI YACGTR 1 cut(s) 1109
BstC8I GCNNGC 7 cut(s) 49, 246, 252, 472, 662, 666, 1123
BstDEI CTNAG 2 cut(s) 555, 1194
BstF5I GGATG 3 cut(s) 39, 415, 1075
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 2 cut(s) 250, 337
BstKTI GATC 5 cut(s) 329, 362, 504, 614, 1015
BstMAI GTCTC 4 cut(s) 25, 442, 631, 1150
BstMBI GATC 5 cut(s) 326, 359, 501, 611, 1012
BstMWI GCNNNNNNNGC 9 cut(s) 22, 115, 176, 185, 188, 254, 809, 862, 962
BstNI CCWGG 2 cut(s) 272, 702
BstNSI RCATGY 3 cut(s) 511, 664, 972
BstSCI CCNGG 2 cut(s) 270, 700
BstUI CGCG 1 cut(s) 203
BstX2I RGATCY 3 cut(s) 359, 501, 1012
BstXI CCANNNNNNTGG 1 cut(s) 708
BstYI RGATCY 3 cut(s) 359, 501, 1012
BsuRI GGCC 7 cut(s) 16, 276, 485, 668, 728, 795, 1125
BtsCI GGATG 3 cut(s) 39, 415, 1075
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 7 cut(s) 49, 246, 252, 472, 662, 666, 1123
CaiI CAGNNNCTG 1 cut(s) 962
CfoI GCGC 2 cut(s) 250, 337
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 4 cut(s) 274, 726, 1103, 1124
Csp6I GTAC 3 cut(s) 263, 285, 747
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 3 cut(s) 508, 661, 969
CviQI GTAC 3 cut(s) 263, 285, 747
DdeI CTNAG 2 cut(s) 555, 1194
DpnI GATC 5 cut(s) 328, 361, 503, 613, 1014
DpnII GATC 5 cut(s) 326, 359, 501, 611, 1012
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 803
Eco130I CCWWGG 2 cut(s) 796, 913
Eco147I AGGCCT 1 cut(s) 668
Eco24I GRGCYC 1 cut(s) 805
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 1103
Eco53kI GAGCTC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 1113
Eco72I CACGTG 1 cut(s) 1109
EcoICRI GAGCTC 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 870
EcoRII CCWGG 2 cut(s) 270, 700
EcoT14I CCWWGG 2 cut(s) 796, 913
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 796, 913
FaeI CATG 3 cut(s) 511, 664, 972
FalI AAGNNNNNCTT 2 cut(s) 1033, 1065
FaqI GGGAC 1 cut(s) 569
FatI CATG 3 cut(s) 507, 660, 968
FauNDI CATATG 1 cut(s) 580
FokI GGATG 3 cut(s) 46, 422, 1082
FriOI GRGCYC 1 cut(s) 805
FspBI CTAG 2 cut(s) 897, 977
GlaI GCGC 2 cut(s) 249, 336
GsaI CCCAGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 475
HaeIII GGCC 7 cut(s) 16, 276, 485, 668, 728, 795, 1125
HapII CCGG 2 cut(s) 17, 258
HhaI GCGC 2 cut(s) 250, 337
Hin1II CATG 3 cut(s) 511, 664, 972
Hin6I GCGC 2 cut(s) 248, 335
HinP1I GCGC 2 cut(s) 248, 335
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HindIII AAGCTT 2 cut(s) 472, 695
HinfI GANTC 2 cut(s) 205, 450
HpaII CCGG 2 cut(s) 17, 258
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 5 cut(s) 214, 549, 789, 846, 1106
Hpy188I TCNGA 3 cut(s) 71, 161, 558
Hpy188III TCNNGA 9 cut(s) 140, 211, 221, 317, 434, 454, 742, 815, 851
Hpy8I GTNNAC 5 cut(s) 214, 549, 789, 846, 1106
Hpy99I CGWCG 1 cut(s) 999
HpyAV CCTTC 8 cut(s) 36, 357, 431, 679, 767, 1003, 1075, 1137
HpyCH4III ACNGT 2 cut(s) 370, 496
HpyCH4IV ACGT 2 cut(s) 430, 1108
HpyCH4V TGCA 9 cut(s) 244, 294, 470, 563, 664, 833, 902, 944, 956
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 115, 176, 185, 188, 254, 809, 862, 962
HpyF3I CTNAG 2 cut(s) 555, 1194
HpySE526I ACGT 2 cut(s) 430, 1108
Hsp92II CATG 3 cut(s) 511, 664, 972
HspAI GCGC 2 cut(s) 248, 335
Kzo9I GATC 5 cut(s) 326, 359, 501, 611, 1012
LmnI GCTCC 1 cut(s) 800
LweI GCATC 4 cut(s) 49, 133, 300, 789
MaeI CTAG 2 cut(s) 897, 977
MaeII ACGT 2 cut(s) 430, 1108
MaeIII GTNAC 2 cut(s) 386, 632
MalI GATC 5 cut(s) 328, 361, 503, 613, 1014
MboI GATC 5 cut(s) 326, 359, 501, 611, 1012
MboII GAAGA 2 cut(s) 554, 1042
MflI RGATCY 3 cut(s) 359, 501, 1012
MhlI GDGCHC 2 cut(s) 41, 805
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 7 cut(s) 64, 148, 354, 532, 870, 922, 1098
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 444
MnlI CCTC 6 cut(s) 99, 159, 228, 452, 1059, 1067
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MseI TTAA 3 cut(s) 323, 476, 693
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 959, 1189
MspI CCGG 2 cut(s) 17, 258
MspR9I CCNGG 2 cut(s) 272, 702
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 272, 702
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 9 cut(s) 22, 115, 176, 185, 188, 254, 809, 862, 962
NdeI CATATG 1 cut(s) 580
NdeII GATC 5 cut(s) 326, 359, 501, 611, 1012
NlaIII CATG 3 cut(s) 511, 664, 972
NlaIV GGNNCC 4 cut(s) 361, 463, 727, 1014
NspI RCATGY 3 cut(s) 511, 664, 972
PaeI GCATGC 1 cut(s) 664
PceI AGGCCT 1 cut(s) 668
PciI ACATGT 1 cut(s) 968
PcsI WCGNNNNNNNCGW 1 cut(s) 1114
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 1112
PfoI TCCNGGA 1 cut(s) 700
PleI GAGTC 1 cut(s) 444
PmaCI CACGTG 1 cut(s) 1109
PmlI CACGTG 1 cut(s) 1109
PpsI GAGTC 1 cut(s) 444
Ppu21I YACGTR 1 cut(s) 1109
PscI ACATGT 1 cut(s) 968
Psp124BI GAGCTC 1 cut(s) 805
Psp6I CCWGG 2 cut(s) 270, 700
PspCI CACGTG 1 cut(s) 1109
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 2 cut(s) 270, 700
PspN4I GGNNCC 4 cut(s) 361, 463, 727, 1014
PspPI GGNCC 4 cut(s) 274, 726, 1103, 1124
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 3 cut(s) 359, 501, 1012
PvuII CAGCTG 2 cut(s) 959, 1189
RsaI GTAC 3 cut(s) 264, 286, 748
RsaNI GTAC 3 cut(s) 263, 285, 747
RseI CAYNNNNRTG 1 cut(s) 382
SacI GAGCTC 1 cut(s) 805
SaqAI TTAA 3 cut(s) 323, 476, 693
Sau3AI GATC 5 cut(s) 326, 359, 501, 611, 1012
Sau96I GGNCC 4 cut(s) 274, 726, 1103, 1124
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 2 cut(s) 272, 702
SduI GDGCHC 2 cut(s) 41, 805
SfaNI GCATC 4 cut(s) 49, 133, 300, 789
SinI GGWCC 1 cut(s) 1103
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 2 cut(s) 851, 1055
SmoI CTYRAG 2 cut(s) 851, 1055
SphI GCATGC 1 cut(s) 664
Sse9I AATT 7 cut(s) 64, 148, 354, 532, 870, 922, 1098
SseBI AGGCCT 1 cut(s) 668
SsiI CCGC 4 cut(s) 109, 201, 529, 974
SspMI CTAG 2 cut(s) 897, 977
SstI GAGCTC 1 cut(s) 805
StuI AGGCCT 1 cut(s) 668
StyD4I CCNGG 2 cut(s) 270, 700
StyI CCWWGG 2 cut(s) 796, 913
TaaI ACNGT 2 cut(s) 370, 496
TaiI ACGT 2 cut(s) 433, 1111
TaqI TCGA 2 cut(s) 222, 1117
TasI AATT 7 cut(s) 64, 148, 354, 532, 870, 922, 1098
TatI WGTACW 1 cut(s) 746
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 3 cut(s) 323, 476, 693
Tru9I TTAA 3 cut(s) 323, 476, 693
TscAI CASTG 1 cut(s) 411
TspDTI ATGAA 5 cut(s) 749, 906, 1094, 1166, 1170
TspRI CASTG 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 1112
VpaK11BI GGWCC 1 cut(s) 1103
XapI RAATTY 2 cut(s) 870, 922
XceI RCATGY 3 cut(s) 511, 664, 972
XcmI CCANNNNNNNNNTGG 2 cut(s) 278, 493
XspI CTAG 2 cut(s) 897, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.