Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007653

Physical Location & Seq

Genomic Coordinates Reverse (-)

17581950 .. 17586402

Gene Structure 4453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGTGGCTTCAAGGCCACTCTCGCCTTCGTGGATGAGCACAGCAGCGAGCAGAGTTGATGTCAATTTCAGAGAAAGCAAAGAACAACAACAACAACAACAAAAACAGAGGCGGCAGCAGCAGAACCAATCTGTTCCCATTCCTGATGCCAATTTGAGTTTTGGAGAGAGGGCTTTGTCTGCTGCTGGTGCTGCTTTTGTTTCCGCGATTCTCGTGAACCCTCTTGATGTTGCCAAGACAAGGTTGCAAGCGCAGGCTGCCGGAGTACCTTACCAGGGCCTATGTGGTACGCCTTGCACTGAAACAAACACGATGCTTCCAGATTTAAGATCATCTGCGCTACGCACACCTTCGCTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAACCAGTATAAAGGAACACTGGATGTGCTGTTGAAAGTCATACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTAACATTGGCCATACCAACTGTGGGGATCTACATGCCTTGTTATGACATTTTCCGCAATTTGATGGAAGAGTTCACAACTCAGAATGCACCAAATCTAACACCATATGTCCCATTAGTTGCTGGGTCATTAGCACGATCATTGGCTTGTGTCTCTTGTTACCCTATTGAACTGGCAAGGACACGCATGCAGGCCTTCAAGCAAACCCAAGCTGGTGTTAAGCTTCCAGGAGTTTGGGGAACGCTGACTGGGGCCCATCAACCCTTACAAAACTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGCTCGTGATGTTCCTTTTTCTGCAATCTGTTGGTCAACTCTTGAGCCAATAAGGCGCAGAATTCTTGGTCTGGTAGGTGATGAACCTAGTGCAGCCACTATCCTTGGGGCAAATTTCTCTGCTGGATTTGTTGCAGGAAGTCTTGCAGCTGCTGCTACATGTCCGCTAGATGTGGGCAAAAACCCGACGACAGATAGAGAAGGATCCTACAAGGGCATTGAAGATGACAACAAGACAAACTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

344

Amino Acids

37.28

Weight (kDa)

9.08

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	52 - 88	4.7e-06	Mitochondrial carrier protein
Mito_carr	PF00153	133 - 182	4.2e-08	Mitochondrial carrier protein
Mito_carr	PF00153	192 - 283	5.8e-11	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46320 AT2G46320 AT2G46320 AT2G46320 AT2G46320
fragaria_vesca	FvH4_7g15880 FvH4_7g15880 FvH4_7g15880
malus_domestica	MD01G1075800.v1.1 MD07G1144600.v1.1
prunus_persica	Prupe.2G183400_v2.0.a1
pyrus_communis	pycom01g10470 pycom07g14320
rosa_chinensis	RchiOBHm_Chr1g0358701
rosa_laevigata	RLG00000027934
rosa_multiflora	Rmu_sc0011191.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297690
rosa_rugosa	Rorug01G0264400 Rorug01G0264500
rosa_samantha	Rh1AG278900 Rh1BG245500 Rh1CG262400 Rh1DG273800
rosa_wichuraiana	Rw1G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AciI	CCGC	4 cut(s)	112, 204, 532, 950
AclWI	GGATC	5 cut(s)	357, 370, 512, 984, 997
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	846, 898
AfaI	GTAC	2 cut(s)	267, 289
AfiI	CCNNNNNNNGG	3 cut(s)	240, 275, 500
AflIII	ACRYGT	1 cut(s)	944
AgsI	TTSAA	5 cut(s)	12, 424, 647, 676, 1007
AjnI	CCWGG	2 cut(s)	273, 703
AluBI	AGCT	5 cut(s)	477, 689, 700, 779, 935
AluI	AGCT	5 cut(s)	477, 689, 700, 779, 935
Alw21I	GWGCWC	2 cut(s)	41, 781
Alw26I	GTCTC	2 cut(s)	445, 634
AlwI	GGATC	5 cut(s)	357, 370, 512, 984, 997
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	6 cut(s)	14, 277, 486, 669, 729, 769
ApaI	GGGCCC	1 cut(s)	733
ApoI	RAATTY	2 cut(s)	846, 898
AspLEI	GCGC	3 cut(s)	253, 340, 843
AspS9I	GGNCC	3 cut(s)	277, 729, 730
AsuHPI	GGTGA	1 cut(s)	875
BaeGI	GKGCMC	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	488
BamHI	GGATCC	2 cut(s)	362, 989
BanII	GRGCYC	2 cut(s)	733, 781
BauI	CACGAG	2 cut(s)	212, 789
Bbv12I	GWGCWC	2 cut(s)	41, 781
BccI	CCATC	2 cut(s)	535, 741
BciT130I	CCWGG	2 cut(s)	275, 705
BcoDI	GTCTC	2 cut(s)	445, 634
BfaI	CTAG	2 cut(s)	873, 953
BglI	GCCNNNNNGGC	1 cut(s)	838
Bme1390I	CCNGG	2 cut(s)	275, 705
BmgT120I	GGNCC	3 cut(s)	277, 729, 730
BmiI	GGNNCC	5 cut(s)	364, 466, 730, 731, 991
BmrFI	CCNGG	2 cut(s)	275, 705
BmrI	ACTGGG	1 cut(s)	735
BmsI	GCATC	3 cut(s)	136, 303, 765
BmuI	ACTGGG	1 cut(s)	735
BpmI	CTGGAG	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	848
BsaJI	CCNNGG	3 cut(s)	274, 772, 889
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 275, 500
Bse1I	ACTGG	5 cut(s)	394, 414, 654, 730, 772
BseBI	CCWGG	2 cut(s)	275, 705
BseDI	CCNNGG	3 cut(s)	274, 772, 889
BseGI	GGATG	2 cut(s)	39, 418
BseLI	CCNNNNNNNGG	3 cut(s)	240, 275, 500
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	5 cut(s)	394, 414, 654, 730, 772
BseSI	GKGCMC	1 cut(s)	733
BseYI	CCCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	6 cut(s)	16, 279, 488, 671, 731, 771
BsiHKAI	GWGCWC	2 cut(s)	41, 781
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	3 cut(s)	240, 275, 500
BsmAI	GTCTC	2 cut(s)	445, 634
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	6 cut(s)	16, 279, 488, 671, 731, 771
Bsp120I	GGGCCC	1 cut(s)	729
Bsp1286I	GDGCHC	3 cut(s)	41, 733, 781
Bsp143I	GATC	5 cut(s)	329, 362, 504, 614, 989
BspACI	CCGC	4 cut(s)	112, 204, 532, 950
BspANI	GGCC	6 cut(s)	16, 279, 488, 671, 731, 771
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	5 cut(s)	364, 466, 730, 731, 991
BspPI	GGATC	5 cut(s)	357, 370, 512, 984, 997
BsrI	ACTGG	5 cut(s)	394, 414, 654, 730, 772
BssECI	CCNNGG	3 cut(s)	274, 772, 889
BssMI	GATC	5 cut(s)	329, 362, 504, 614, 989
BssSI	CACGAG	2 cut(s)	212, 789
BssT1I	CCWWGG	2 cut(s)	772, 889
Bst2BI	CACGAG	2 cut(s)	212, 789
Bst2UI	CCWGG	2 cut(s)	275, 705
Bst4CI	ACNGT	2 cut(s)	373, 499
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	938
BstC8I	GCNNGC	6 cut(s)	49, 249, 255, 475, 665, 669
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	39, 418
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	3 cut(s)	253, 340, 843
BstKTI	GATC	5 cut(s)	332, 365, 507, 617, 992
BstMAI	GTCTC	2 cut(s)	445, 634
BstMBI	GATC	5 cut(s)	329, 362, 504, 614, 989
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 118, 179, 188, 191, 257, 785, 838, 938
BstNI	CCWGG	2 cut(s)	275, 705
BstNSI	RCATGY	3 cut(s)	514, 667, 948
BstSCI	CCNGG	2 cut(s)	273, 703
BstSLI	GKGCMC	1 cut(s)	733
BstUI	CGCG	1 cut(s)	206
BstX2I	RGATCY	3 cut(s)	362, 504, 989
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	3 cut(s)	362, 504, 989
BsuRI	GGCC	6 cut(s)	16, 279, 488, 671, 731, 771
BtsCI	GGATG	2 cut(s)	39, 418
BtsIMutI	CAGTG	2 cut(s)	297, 407
Cac8I	GCNNGC	6 cut(s)	49, 249, 255, 475, 665, 669
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	3 cut(s)	253, 340, 843
Cfr13I	GGNCC	3 cut(s)	277, 729, 730
Csp6I	GTAC	2 cut(s)	266, 288
CspCI	CAANNNNNGTGG	2 cut(s)	871, 906
CviAII	CATG	3 cut(s)	511, 664, 945
CviQI	GTAC	2 cut(s)	266, 288
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	5 cut(s)	331, 364, 506, 616, 991
DpnII	GATC	5 cut(s)	329, 362, 504, 614, 989
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	779
Eco130I	CCWWGG	2 cut(s)	772, 889
Eco147I	AGGCCT	1 cut(s)	671
Eco24I	GRGCYC	2 cut(s)	733, 781
Eco53kI	GAGCTC	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	779
EcoO109I	RGGNCCY	2 cut(s)	277, 729
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	2 cut(s)	273, 703
EcoT14I	CCWWGG	2 cut(s)	772, 889
EcoT38I	GRGCYC	2 cut(s)	733, 781
ErhI	CCWWGG	2 cut(s)	772, 889
FaeI	CATG	3 cut(s)	514, 667, 948
FalI	AAGNNNNNCTT	1 cut(s)	1010
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	3 cut(s)	510, 663, 944
FauNDI	CATATG	1 cut(s)	583
FokI	GGATG	2 cut(s)	46, 425
FriOI	GRGCYC	2 cut(s)	733, 781
FspBI	CTAG	2 cut(s)	873, 953
GlaI	GCGC	3 cut(s)	252, 339, 842
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	6 cut(s)	16, 279, 488, 671, 731, 771
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	3 cut(s)	253, 340, 843
Hin1II	CATG	3 cut(s)	514, 667, 948
Hin6I	GCGC	3 cut(s)	251, 338, 841
HinP1I	GCGC	3 cut(s)	251, 338, 841
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HindIII	AAGCTT	2 cut(s)	475, 698
HinfI	GANTC	2 cut(s)	208, 453
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	875
Hpy166II	GTNNAC	4 cut(s)	217, 552, 765, 822
Hpy188I	TCNGA	2 cut(s)	71, 561
Hpy188III	TCNNGA	8 cut(s)	143, 214, 224, 320, 437, 457, 791, 827
Hpy8I	GTNNAC	4 cut(s)	217, 552, 765, 822
Hpy99I	CGWCG	1 cut(s)	976
HpyAV	CCTTC	5 cut(s)	36, 360, 434, 682, 980
HpyCH4III	ACNGT	2 cut(s)	373, 499
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	9 cut(s)	247, 297, 473, 566, 667, 809, 878, 920, 932
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 118, 179, 188, 191, 257, 785, 838, 938
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	3 cut(s)	514, 667, 948
HspAI	GCGC	3 cut(s)	251, 338, 841
Kzo9I	GATC	5 cut(s)	329, 362, 504, 614, 989
LmnI	GCTCC	1 cut(s)	776
LweI	GCATC	3 cut(s)	136, 303, 765
MaeI	CTAG	2 cut(s)	873, 953
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	389, 635
MalI	GATC	5 cut(s)	331, 364, 506, 616, 991
MboI	GATC	5 cut(s)	329, 362, 504, 614, 989
MboII	GAAGA	2 cut(s)	557, 1019
MflI	RGATCY	3 cut(s)	362, 504, 989
MhlI	GDGCHC	3 cut(s)	41, 733, 781
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	6 cut(s)	64, 151, 357, 535, 846, 898
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	447
MnlI	CCTC	4 cut(s)	102, 162, 231, 455
Mox20I	TGGCCA	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	3 cut(s)	326, 479, 696
MslI	CAYNNNNRTG	1 cut(s)	385
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	935
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	275, 705
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	275, 705
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	9 cut(s)	22, 118, 179, 188, 191, 257, 785, 838, 938
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	5 cut(s)	329, 362, 504, 614, 989
NlaIII	CATG	3 cut(s)	514, 667, 948
NlaIV	GGNNCC	5 cut(s)	364, 466, 730, 731, 991
NspI	RCATGY	3 cut(s)	514, 667, 948
PaeI	GCATGC	1 cut(s)	667
PceI	AGGCCT	1 cut(s)	671
PciI	ACATGT	1 cut(s)	944
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	703
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PscI	ACATGT	1 cut(s)	944
Psp124BI	GAGCTC	1 cut(s)	781
Psp6I	CCWGG	2 cut(s)	273, 703
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	273, 703
PspN4I	GGNNCC	5 cut(s)	364, 466, 730, 731, 991
PspOMI	GGGCCC	1 cut(s)	729
PspPI	GGNCC	3 cut(s)	277, 729, 730
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	3 cut(s)	362, 504, 989
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	2 cut(s)	267, 289
RsaNI	GTAC	2 cut(s)	266, 288
RseI	CAYNNNNRTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	781
SaqAI	TTAA	3 cut(s)	326, 479, 696
Sau3AI	GATC	5 cut(s)	329, 362, 504, 614, 989
Sau96I	GGNCC	3 cut(s)	277, 729, 730
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	275, 705
SduI	GDGCHC	3 cut(s)	41, 733, 781
SfaNI	GCATC	3 cut(s)	136, 303, 765
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	6 cut(s)	64, 151, 357, 535, 846, 898
SseBI	AGGCCT	1 cut(s)	671
SsiI	CCGC	4 cut(s)	112, 204, 532, 950
SspMI	CTAG	2 cut(s)	873, 953
SstI	GAGCTC	1 cut(s)	781
StuI	AGGCCT	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	273, 703
StyI	CCWWGG	2 cut(s)	772, 889
TaaI	ACNGT	2 cut(s)	373, 499
TaiI	ACGT	1 cut(s)	436
TasI	AATT	6 cut(s)	64, 151, 357, 535, 846, 898
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	326, 479, 696
Tru9I	TTAA	3 cut(s)	326, 479, 696
TscAI	CASTG	2 cut(s)	304, 414
TspDTI	ATGAA	1 cut(s)	882
TspRI	CASTG	2 cut(s)	304, 414
XapI	RAATTY	2 cut(s)	846, 898
XceI	RCATGY	3 cut(s)	514, 667, 948
XcmI	CCANNNNNNNNNTGG	2 cut(s)	281, 496
XspI	CTAG	2 cut(s)	873, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.