Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007653

Physical Location & Seq

Genomic Coordinates Forward (+)

50772254 .. 50776203

Gene Structure 3950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGTGGCTTCAAGGCCGGTCTCGCCTTCGTGGATGAGCACAGCAGCGAGCAGAGTTGATGCCAATTTCAGAGAAAGCAAAGAACAACAACAACAAAAACAGAGGCGGCAGCAGCAGAACCAATCTGTTCCCATTCCTGATGCCAATTTGAGTTTCGGAGAGAGGGCTTTGTCTGCTGCTGGTGCTGCTTTTGTTTCCGCGATTCTCGTGAACCCTCTCGAGGTTGCCAAGACAAGGTTGCAAGCGCAGGCTGCCGGAGTACCTTACCAGGGCCTATGTGCTACGCCTTGCATTGAAACAAACACGATGCTTCCAGATTTAAGATCATCTGCGCTACGCACACCTTCGCTAATTGGATCCAAGACTGTCTGCCCACCAGAATGTAACCAGTATAAAGGAACACTGGATGTGCTGTTGAAAGTCATACGTCAGGAAGGATTTTGGAGACTCTGGAGAGGAACCAATGCAAGCTTAACATTGGCCATACCAACTGTGGGGATCTACATGCCTTGTTATGACATTTTCCGCAATTTGATGGAAGAGTTCACAACTCAGAATGCACCAAATCTAACACCATATGTCCCATTAGTTGCTGGGTCATTAGCACGATCATTGGCTTGTGTCTCTTGTTACCCTATTGAACTGGCAAGGACACGCATGCAGGCCTTCAAGCAAACCCAAGCTGGTGTTAAGCTTCCAGGAGTTTGGGGAACGCTGACTGGGGCCGTCAACCCTGTCAAGAGTACAAACCCCCTTCATAACTTACAAAACTATCGCATCTTGTGGACTGGCCTTGGAGCTCAACTTGCTCGTGATGTTCCTTTTTCTGCAATCTGTTGGTCAACTCTTGAGCCAATAAGGCGCAGAATTCTTGGTCTGGTAGGTGATGAACCTAGTGCAGCCACTATCCTTGGGGCAAATTTCTCTGCTGGATTTGTTGCAGGAAGTCTTGCAGCTGCTGCTACATGTCCGCTAGATGTGGCAAAAACCCGACGACAGATAGAGAAGGATCCTACAAGGGCATTGAAGATGACAACAAGACAAACTTTGCTTGAGATTTGGAGGGATGGACGAATGAAGGGATTGTTTATGGGAATTGGTCCACGTGTTGGTCGAGCTGGCCCTTCAGTTGGGATTGTTGTCTCCTTTTATGAAGTTGTCAAGCATGCTATTCATTATAGACAGCTGACTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

398

Amino Acids

43.45

Weight (kDa)

9.81

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	131 - 180	5.3e-08	Mitochondrial carrier protein
Mito_carr	PF00153	190 - 290	1.9e-10	Mitochondrial carrier protein
Mito_carr	PF00153	305 - 392	5.3e-16	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46320 AT2G46320 AT2G46320 AT2G46320 AT2G46320
fragaria_vesca	FvH4_7g15880 FvH4_7g15880 FvH4_7g15880
malus_domestica	MD01G1075800.v1.1 MD07G1144600.v1.1
prunus_persica	Prupe.2G183400_v2.0.a1
pyrus_communis	pycom01g10470 pycom07g14320
rosa_chinensis	RchiOBHm_Chr1g0358701
rosa_laevigata	RLG00000027934
rosa_multiflora	Rmu_sc0011191.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297690
rosa_rugosa	Rorug01G0264400 Rorug01G0264500
rosa_samantha	Rh1AG278900 Rh1BG245500 Rh1CG262400 Rh1DG273800
rosa_wichuraiana	Rw1G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccII	CGCG	1 cut(s)	200
AciI	CCGC	4 cut(s)	106, 198, 526, 971
AclWI	GGATC	5 cut(s)	351, 364, 506, 1004, 1017
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	867, 919
AcuI	CTGAAG	1 cut(s)	1110
AcvI	CACGTG	1 cut(s)	1106
AfaI	GTAC	2 cut(s)	261, 745
AfiI	CCNNNNNNNGG	6 cut(s)	220, 234, 269, 494, 1109, 1130
AflIII	ACRYGT	2 cut(s)	965, 1105
AgsI	TTSAA	6 cut(s)	12, 296, 418, 641, 670, 1027
AjnI	CCWGG	2 cut(s)	267, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	7 cut(s)	471, 683, 694, 800, 956, 1118, 1186
AluI	AGCT	7 cut(s)	471, 683, 694, 800, 956, 1118, 1186
Alw21I	GWGCWC	2 cut(s)	41, 802
Alw26I	GTCTC	4 cut(s)	25, 439, 628, 1147
AlwI	GGATC	5 cut(s)	351, 364, 506, 1004, 1017
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	7 cut(s)	14, 271, 480, 663, 723, 790, 1120
ApoI	RAATTY	2 cut(s)	867, 919
AspLEI	GCGC	3 cut(s)	247, 334, 864
AspS9I	GGNCC	4 cut(s)	271, 723, 1100, 1121
AsuHPI	GGTGA	1 cut(s)	896
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	1100
BalI	TGGCCA	1 cut(s)	482
BamHI	GGATCC	2 cut(s)	356, 1009
BanII	GRGCYC	1 cut(s)	802
BauI	CACGAG	2 cut(s)	206, 810
BbrPI	CACGTG	1 cut(s)	1106
Bbv12I	GWGCWC	2 cut(s)	41, 802
BccI	CCATC	2 cut(s)	529, 1061
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	2 cut(s)	269, 699
BcoDI	GTCTC	4 cut(s)	25, 439, 628, 1147
BfaI	CTAG	2 cut(s)	894, 974
BglI	GCCNNNNNGGC	1 cut(s)	859
Bme1390I	CCNGG	2 cut(s)	269, 699
Bme18I	GGWCC	1 cut(s)	1100
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	4 cut(s)	271, 723, 1100, 1121
BmiI	GGNNCC	4 cut(s)	358, 460, 724, 1011
BmrFI	CCNGG	2 cut(s)	269, 699
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	4 cut(s)	49, 130, 297, 786
BmuI	ACTGGG	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	869, 1073
BsaAI	YACGTR	1 cut(s)	1106
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	268, 793, 910
Bsc4I	CCNNNNNNNGG	6 cut(s)	220, 234, 269, 494, 1109, 1130
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	5 cut(s)	388, 408, 648, 724, 793
BseBI	CCWGG	2 cut(s)	269, 699
BseDI	CCNNGG	3 cut(s)	268, 793, 910
BseGI	GGATG	3 cut(s)	39, 412, 1072
BseLI	CCNNNNNNNGG	6 cut(s)	220, 234, 269, 494, 1109, 1130
BseMII	CTCAG	2 cut(s)	566, 1182
BseNI	ACTGG	5 cut(s)	388, 408, 648, 724, 793
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	918
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	7 cut(s)	16, 273, 482, 665, 725, 792, 1122
BsiHKAI	GWGCWC	2 cut(s)	41, 802
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	17, 255
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	6 cut(s)	220, 234, 269, 494, 1109, 1130
BsmAI	GTCTC	4 cut(s)	25, 439, 628, 1147
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	7 cut(s)	16, 273, 482, 665, 725, 792, 1122
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	41, 802
Bsp143I	GATC	5 cut(s)	323, 356, 498, 608, 1009
BspACI	CCGC	4 cut(s)	106, 198, 526, 971
BspANI	GGCC	7 cut(s)	16, 273, 482, 665, 725, 792, 1122
BspCNI	CTCAG	2 cut(s)	565, 1183
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	358, 460, 724, 1011
BspPI	GGATC	5 cut(s)	351, 364, 506, 1004, 1017
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	5 cut(s)	388, 408, 648, 724, 793
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	268, 793, 910
BssMI	GATC	5 cut(s)	323, 356, 498, 608, 1009
BssSI	CACGAG	2 cut(s)	206, 810
BssT1I	CCWWGG	2 cut(s)	793, 910
Bst2BI	CACGAG	2 cut(s)	206, 810
Bst2UI	CCWGG	2 cut(s)	269, 699
Bst4CI	ACNGT	2 cut(s)	367, 493
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstBAI	YACGTR	1 cut(s)	1106
BstC8I	GCNNGC	8 cut(s)	49, 243, 249, 469, 659, 663, 1120, 1167
BstDEI	CTNAG	2 cut(s)	552, 1191
BstF5I	GGATG	3 cut(s)	39, 412, 1072
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	3 cut(s)	247, 334, 864
BstKTI	GATC	5 cut(s)	326, 359, 501, 611, 1012
BstMAI	GTCTC	4 cut(s)	25, 439, 628, 1147
BstMBI	GATC	5 cut(s)	323, 356, 498, 608, 1009
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 112, 173, 182, 185, 251, 806, 859, 959
BstNI	CCWGG	2 cut(s)	269, 699
BstNSI	RCATGY	4 cut(s)	508, 661, 969, 1169
BstSCI	CCNGG	2 cut(s)	267, 697
BstUI	CGCG	1 cut(s)	200
BstX2I	RGATCY	3 cut(s)	356, 498, 1009
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstYI	RGATCY	3 cut(s)	356, 498, 1009
BsuRI	GGCC	7 cut(s)	16, 273, 482, 665, 725, 792, 1122
BtsCI	GGATG	3 cut(s)	39, 412, 1072
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	8 cut(s)	49, 243, 249, 469, 659, 663, 1120, 1167
CaiI	CAGNNNCTG	1 cut(s)	959
CfoI	GCGC	3 cut(s)	247, 334, 864
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	4 cut(s)	271, 723, 1100, 1121
Csp6I	GTAC	2 cut(s)	260, 744
CspCI	CAANNNNNGTGG	2 cut(s)	892, 927
CviAII	CATG	4 cut(s)	505, 658, 966, 1166
CviQI	GTAC	2 cut(s)	260, 744
DdeI	CTNAG	2 cut(s)	552, 1191
DpnI	GATC	5 cut(s)	325, 358, 500, 610, 1011
DpnII	GATC	5 cut(s)	323, 356, 498, 608, 1009
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	800
Eco130I	CCWWGG	2 cut(s)	793, 910
Eco147I	AGGCCT	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	802
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	1100
Eco53kI	GAGCTC	1 cut(s)	800
Eco57I	CTGAAG	1 cut(s)	1110
Eco72I	CACGTG	1 cut(s)	1106
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	867
EcoRII	CCWGG	2 cut(s)	267, 697
EcoT14I	CCWWGG	2 cut(s)	793, 910
EcoT38I	GRGCYC	1 cut(s)	802
ErhI	CCWWGG	2 cut(s)	793, 910
FaeI	CATG	4 cut(s)	508, 661, 969, 1169
FalI	AAGNNNNNCTT	2 cut(s)	1030, 1062
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	4 cut(s)	504, 657, 965, 1165
FauNDI	CATATG	1 cut(s)	577
FokI	GGATG	3 cut(s)	46, 419, 1079
FriOI	GRGCYC	1 cut(s)	802
FspBI	CTAG	2 cut(s)	894, 974
GlaI	GCGC	3 cut(s)	246, 333, 863
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	7 cut(s)	16, 273, 482, 665, 725, 792, 1122
HapII	CCGG	2 cut(s)	17, 255
HhaI	GCGC	3 cut(s)	247, 334, 864
Hin1II	CATG	4 cut(s)	508, 661, 969, 1169
Hin6I	GCGC	3 cut(s)	245, 332, 862
HinP1I	GCGC	3 cut(s)	245, 332, 862
HincII	GTYRAC	2 cut(s)	730, 843
HindII	GTYRAC	2 cut(s)	730, 843
HindIII	AAGCTT	2 cut(s)	469, 692
HinfI	GANTC	2 cut(s)	202, 447
HpaII	CCGG	2 cut(s)	17, 255
HphI	GGTGA	1 cut(s)	896
Hpy166II	GTNNAC	6 cut(s)	211, 546, 730, 786, 843, 1103
Hpy188I	TCNGA	3 cut(s)	71, 158, 555
Hpy188III	TCNNGA	9 cut(s)	137, 208, 218, 314, 431, 451, 739, 812, 848
Hpy8I	GTNNAC	6 cut(s)	211, 546, 730, 786, 843, 1103
Hpy99I	CGWCG	1 cut(s)	996
HpyAV	CCTTC	8 cut(s)	36, 354, 428, 676, 764, 1000, 1072, 1134
HpyCH4III	ACNGT	2 cut(s)	367, 493
HpyCH4IV	ACGT	2 cut(s)	427, 1105
HpyCH4V	TGCA	9 cut(s)	241, 291, 467, 560, 661, 830, 899, 941, 953
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 112, 173, 182, 185, 251, 806, 859, 959
HpyF3I	CTNAG	2 cut(s)	552, 1191
HpySE526I	ACGT	2 cut(s)	427, 1105
Hsp92II	CATG	4 cut(s)	508, 661, 969, 1169
HspAI	GCGC	3 cut(s)	245, 332, 862
Kzo9I	GATC	5 cut(s)	323, 356, 498, 608, 1009
LmnI	GCTCC	1 cut(s)	797
LweI	GCATC	4 cut(s)	49, 130, 297, 786
MaeI	CTAG	2 cut(s)	894, 974
MaeII	ACGT	2 cut(s)	427, 1105
MaeIII	GTNAC	2 cut(s)	383, 629
MalI	GATC	5 cut(s)	325, 358, 500, 610, 1011
MboI	GATC	5 cut(s)	323, 356, 498, 608, 1009
MboII	GAAGA	2 cut(s)	551, 1039
MflI	RGATCY	3 cut(s)	356, 498, 1009
MhlI	GDGCHC	2 cut(s)	41, 802
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	7 cut(s)	64, 145, 351, 529, 867, 919, 1095
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	441
MnlI	CCTC	6 cut(s)	96, 156, 214, 225, 449, 1056
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	3 cut(s)	320, 473, 690
MslI	CAYNNNNRTG	1 cut(s)	379
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	2 cut(s)	956, 1186
MspI	CCGG	2 cut(s)	17, 255
MspR9I	CCNGG	2 cut(s)	269, 699
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	2 cut(s)	269, 699
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	9 cut(s)	22, 112, 173, 182, 185, 251, 806, 859, 959
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	323, 356, 498, 608, 1009
NlaIII	CATG	4 cut(s)	508, 661, 969, 1169
NlaIV	GGNNCC	4 cut(s)	358, 460, 724, 1011
NspI	RCATGY	4 cut(s)	508, 661, 969, 1169
PaeI	GCATGC	2 cut(s)	661, 1169
PaeR7I	CTCGAG	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	665
PciI	ACATGT	1 cut(s)	965
PcsI	WCGNNNNNNNCGW	1 cut(s)	1111
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	1109
PfoI	TCCNGGA	1 cut(s)	697
PleI	GAGTC	1 cut(s)	441
PmaCI	CACGTG	1 cut(s)	1106
PmlI	CACGTG	1 cut(s)	1106
PpsI	GAGTC	1 cut(s)	441
Ppu21I	YACGTR	1 cut(s)	1106
PscI	ACATGT	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	802
Psp6I	CCWGG	2 cut(s)	267, 697
PspCI	CACGTG	1 cut(s)	1106
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	2 cut(s)	267, 697
PspN4I	GGNNCC	4 cut(s)	358, 460, 724, 1011
PspPI	GGNCC	4 cut(s)	271, 723, 1100, 1121
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	3 cut(s)	356, 498, 1009
PvuII	CAGCTG	2 cut(s)	956, 1186
RsaI	GTAC	2 cut(s)	261, 745
RsaNI	GTAC	2 cut(s)	260, 744
RseI	CAYNNNNRTG	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	802
SaqAI	TTAA	3 cut(s)	320, 473, 690
Sau3AI	GATC	5 cut(s)	323, 356, 498, 608, 1009
Sau96I	GGNCC	4 cut(s)	271, 723, 1100, 1121
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	2 cut(s)	269, 699
SduI	GDGCHC	2 cut(s)	41, 802
SfaNI	GCATC	4 cut(s)	49, 130, 297, 786
Sfr274I	CTCGAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	1100
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	3 cut(s)	218, 848, 1052
SmoI	CTYRAG	3 cut(s)	218, 848, 1052
SphI	GCATGC	2 cut(s)	661, 1169
Sse9I	AATT	7 cut(s)	64, 145, 351, 529, 867, 919, 1095
SseBI	AGGCCT	1 cut(s)	665
SsiI	CCGC	4 cut(s)	106, 198, 526, 971
SspMI	CTAG	2 cut(s)	894, 974
SstI	GAGCTC	1 cut(s)	802
StuI	AGGCCT	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	267, 697
StyI	CCWWGG	2 cut(s)	793, 910
TaaI	ACNGT	2 cut(s)	367, 493
TaiI	ACGT	2 cut(s)	430, 1108
TaqI	TCGA	2 cut(s)	219, 1114
TasI	AATT	7 cut(s)	64, 145, 351, 529, 867, 919, 1095
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	320, 473, 690
Tru9I	TTAA	3 cut(s)	320, 473, 690
TscAI	CASTG	1 cut(s)	408
TspDTI	ATGAA	5 cut(s)	746, 903, 1091, 1163, 1167
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	1109
VpaK11BI	GGWCC	1 cut(s)	1100
XapI	RAATTY	2 cut(s)	867, 919
XceI	RCATGY	4 cut(s)	508, 661, 969, 1169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	218
XspI	CTAG	2 cut(s)	894, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.