Rorug01G0264500

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007653
Physical Location & Seq
Forward (+)
37581866 .. 37594462
12597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0264500.1

Sequence Viewer

Length: 570 bp
ATGTCACAATCTTTTTGGTGGGCCTTACGGAATCTGAGTTCTCTTGGTTCGAACCTCCAGACTAGTCTGTATACAATGGAAGTCTTCTTGTCTGTGATGATATCTATAAGTGGCATGGTGTTATTTTTAGTATATCTAAATGCAAGGGTGCAGATGCAGGAGCCGCAAGAATTATTAGATCAGCCTAAATCAAAAAAGATGCTGTTGCTGAAAAAAGTGCCTGTGCTTGAAAATATTCCTGAAAATATTTTGATAGCAATCTGTGAGCATCTTAAGCCAGTGACATACACTGAAGACAGCTATATTGTTCAAGAGGGGAGACCCCTTGTGAAGATGCTCTTCATCGTGGAAGGCCTTGCATGGACTTACACAACCGGTAACATTGACGTAGGAACGTTAAAGAGAGGCGATTTTTACGGAGAAGAAGTTTTAACTTGGGCATTCCAATCTCCCTCCTTTTCTGGTTTACCCATCTCAACTAGAACTGTTATTTCCGAAGGAAAAATCGAAGCCTTTGCTCTCAGAGCCGGCGACTTGAAGAGTGTTGTCTGTAGTTTTGGTGGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

189

Amino Acids

21.16

Weight (kDa)

5.49

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AciI CCGC 1 cut(s) 164
AclI AACGTT 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 312
AflII CTTAAG 1 cut(s) 272
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 3 cut(s) 230, 311, 538
AhlI ACTAGT 1 cut(s) 62
AloI GAACNNNNNNTCC 2 cut(s) 22, 54
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 313
AoxI GGCC 2 cut(s) 21, 352
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 21
AsuII TTCGAA 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 76, 300
BccI CCATC 1 cut(s) 479
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BcoDI GTCTC 1 cut(s) 313
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 2 cut(s) 63, 480
BfmI CTRYAG 1 cut(s) 550
BfrI CTTAAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 4 cut(s) 144, 189, 277, 324
BpiI GAAGAC 2 cut(s) 76, 300
BpmI CTGGAG 1 cut(s) 41
Bpu14I TTCGAA 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bse118I RCCGGY 2 cut(s) 374, 527
Bse1I ACTGG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 257
BseJI GATNNNNATC 1 cut(s) 257
BseMII CTCAG 2 cut(s) 26, 535
BseNI ACTGG 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 2 cut(s) 23, 354
BshTI ACCGGT 1 cut(s) 374
BsiSI CCGG 2 cut(s) 375, 528
BsmAI GTCTC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 2 cut(s) 23, 354
Bso31I GGTCTC 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 50
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 164
BspANI GGCC 2 cut(s) 23, 354
BspCNI CTCAG 2 cut(s) 27, 534
BspLI GGNNCC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 344
BspT104I TTCGAA 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 374, 527
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 2 cut(s) 374, 527
BssMI GATC 1 cut(s) 178
BssNAI GTATAC 1 cut(s) 72
Bst1107I GTATAC 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 2 cut(s) 344, 533
BstAFI CTTAAG 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 2 cut(s) 35, 521
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 163, 274, 524
BstSFI CTRYAG 1 cut(s) 550
BstV2I GAAGAC 2 cut(s) 76, 300
BstZ17I GTATAC 1 cut(s) 72
BsuRI GGCC 2 cut(s) 23, 354
BtsIMutI CAGTG 2 cut(s) 285, 288
Cac8I GCNNGC 1 cut(s) 529
Cfr10I RCCGGY 2 cut(s) 374, 527
Cfr13I GGNCC 1 cut(s) 21
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 2 cut(s) 115, 360
CviJI RGCY 8 cut(s) 23, 163, 184, 277, 300, 354, 512, 527
CviKI_1 RGCY 8 cut(s) 23, 163, 184, 277, 300, 354, 512, 527
DdeI CTNAG 2 cut(s) 35, 521
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 344, 533
EarI CTCTTC 2 cut(s) 344, 533
Eco147I AGGCCT 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 102
FaeI CATG 2 cut(s) 118, 363
FaiI YATR 7 cut(s) 72, 107, 116, 133, 286, 303, 361
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FatI CATG 2 cut(s) 114, 359
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 2 cut(s) 63, 480
GluI GCNGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 23, 354
HapII CCGG 2 cut(s) 375, 528
Hin1II CATG 2 cut(s) 118, 363
HinfI GANTC 1 cut(s) 31
HpaII CCGG 2 cut(s) 375, 528
Hpy166II GTNNAC 2 cut(s) 72, 467
Hpy188I TCNGA 3 cut(s) 36, 496, 524
Hpy188III TCNNGA 3 cut(s) 58, 239, 311
Hpy8I GTNNAC 2 cut(s) 72, 467
HpyAV CCTTC 2 cut(s) 344, 491
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 387, 395
HpyCH4V TGCA 4 cut(s) 143, 151, 157, 359
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 274, 524
HpyF3I CTNAG 2 cut(s) 35, 521
HpySE526I ACGT 2 cut(s) 387, 395
Hsp92II CATG 2 cut(s) 118, 363
KroI GCCGGC 1 cut(s) 527
KroNI GCCGGC 1 cut(s) 529
Kzo9I GATC 1 cut(s) 178
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 8 cut(s) 71, 143, 234, 252, 291, 388, 447, 541
LweI GCATC 4 cut(s) 144, 189, 277, 324
MaeI CTAG 2 cut(s) 63, 480
MaeII ACGT 2 cut(s) 387, 395
MaeIII GTNAC 3 cut(s) 3, 280, 377
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 6 cut(s) 76, 305, 331, 343, 434, 550
MluCI AATT 1 cut(s) 170
MnlI CCTC 4 cut(s) 65, 307, 398, 463
MroNI GCCGGC 1 cut(s) 527
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 4 cut(s) 273, 398, 431, 568
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 2 cut(s) 375, 528
Mva1269I GAATGC 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 163, 274, 524
NaeI GCCGGC 1 cut(s) 529
NdeII GATC 1 cut(s) 178
NgoMIV GCCGGC 1 cut(s) 527
NlaIII CATG 2 cut(s) 118, 363
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 2 cut(s) 3, 280
NspV TTCGAA 1 cut(s) 50
PceI AGGCCT 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 344
PctI GAATGC 1 cut(s) 440
PdiI GCCGGC 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 31
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 1 cut(s) 165
Psp1406I AACGTT 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 4 cut(s) 273, 398, 431, 568
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 21
SetI ASST 4 cut(s) 57, 302, 390, 398
SfaNI GCATC 4 cut(s) 144, 189, 277, 324
SfcI CTRYAG 1 cut(s) 550
SfuI TTCGAA 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 1 cut(s) 170
SseBI AGGCCT 1 cut(s) 354
SsiI CCGC 1 cut(s) 164
SspI AATATT 2 cut(s) 235, 247
SspMI CTAG 2 cut(s) 63, 480
StuI AGGCCT 1 cut(s) 354
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 390, 398
TaqI TCGA 2 cut(s) 50, 507
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 4 cut(s) 273, 398, 431, 568
Tru9I TTAA 4 cut(s) 273, 398, 431, 568
TscAI CASTG 2 cut(s) 285, 295
TseFI GTSAC 2 cut(s) 3, 280
Tsp45I GTSAC 2 cut(s) 3, 280
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 2 cut(s) 43, 432
TspRI CASTG 2 cut(s) 285, 295
Vha464I CTTAAG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 63, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.