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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61780 AT5G28320 AT5G28400 |
| fragaria_vesca | FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16531 FvH4_7g16560 |
| malus_domestica | MD01G1081300.v1.1 MD07G1150200.v1.1 MD07G1150300.v1.1 |
| prunus_persica | Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 |
| pyrus_communis | pycom01g10920 pycom07g14870 |
| rosa_chinensis | RchiOBHm_Chr1g0359591 |
| rosa_laevigata | RLG00000027859 |
| rosa_multiflora | Rmu_sc0002556.1_g000023 Rmu_sc0013097.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00296900 |
| rosa_rugosa | Rorug01G0272300 Rorug03G0106700 |
| rosa_samantha | Rh1AG285500 Rh1BG251900 Rh1CG269300 Rh1DG280800 |
| rosa_wichuraiana | Rw1G025400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1786 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1153 |
| Acc36I | ACCTGC | 1 cut(s) | 1786 |
| AccBSI | CCGCTC | 1 cut(s) | 634 |
| AccI | GTMKAC | 1 cut(s) | 199 |
| AccIII | TCCGGA | 1 cut(s) | 1647 |
| AciI | CCGC | 6 cut(s) | 211, 634, 1476, 2203, 2789, 3375 |
| AclWI | GGATC | 7 cut(s) | 539, 2116, 2201, 2214, 2760, 2768, 3258 |
| AcoI | YGGCCR | 1 cut(s) | 1197 |
| AcuI | CTGAAG | 1 cut(s) | 1869 |
| AcvI | CACGTG | 2 cut(s) | 1211, 3247 |
| AfaI | GTAC | 5 cut(s) | 524, 1444, 1807, 2089, 2978 |
| AfeI | AGCGCT | 1 cut(s) | 3329 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1003, 1351, 1352, 1664, 1717, 3450 |
| AflII | CTTAAG | 1 cut(s) | 2852 |
| AjnI | CCWGG | 5 cut(s) | 68, 996, 1199, 1710, 2673 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 89, 121, 1496, 1528, 1980, 2012 |
| Alw26I | GTCTC | 5 cut(s) | 47, 1869, 1878, 2162, 2696 |
| AlwI | GGATC | 7 cut(s) | 539, 2116, 2201, 2214, 2760, 2768, 3258 |
| Aor13HI | TCCGGA | 1 cut(s) | 1647 |
| Aor51HI | AGCGCT | 1 cut(s) | 3329 |
| AoxI | GGCC | 4 cut(s) | 1197, 1548, 1685, 3441 |
| ApeKI | GCWGC | 4 cut(s) | 1030, 2653, 2786, 3029 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2654, 2686 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1011, 1659 |
| AspLEI | GCGC | 1 cut(s) | 3330 |
| AspS9I | GGNCC | 4 cut(s) | 1548, 2399, 2670, 2876 |
| AsuC2I | CCSGG | 1 cut(s) | 2638 |
| AsuII | TTCGAA | 1 cut(s) | 1460 |
| AvaII | GGWCC | 3 cut(s) | 2399, 2670, 2876 |
| AxyI | CCTNAGG | 1 cut(s) | 3171 |
| BalI | TGGCCA | 1 cut(s) | 1199 |
| BamHI | GGATCC | 1 cut(s) | 2206 |
| BanII | GRGCYC | 1 cut(s) | 2013 |
| BauI | CACGAG | 1 cut(s) | 205 |
| BbrPI | CACGTG | 2 cut(s) | 1211, 3247 |
| BbsI | GAAGAC | 2 cut(s) | 249, 791 |
| BbvCI | CCTCAGC | 1 cut(s) | 224 |
| BbvI | GCAGC | 4 cut(s) | 1017, 2665, 2773, 3016 |
| BceAI | ACGGC | 1 cut(s) | 3040 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1370, 1404, 1450, 1484 |
| BciT130I | CCWGG | 5 cut(s) | 70, 998, 1201, 1712, 2675 |
| BcnI | CCSGG | 1 cut(s) | 2638 |
| BcoDI | GTCTC | 5 cut(s) | 47, 1869, 1878, 2162, 2696 |
| BfaI | CTAG | 6 cut(s) | 432, 834, 1508, 1605, 1973, 2604 |
| BfmI | CTRYAG | 4 cut(s) | 1389, 2406, 2886, 3030 |
| BfoI | RGCGCY | 1 cut(s) | 3331 |
| BfrI | CTTAAG | 1 cut(s) | 2852 |
| BfuAI | ACCTGC | 1 cut(s) | 1786 |
| BglII | AGATCT | 2 cut(s) | 2947, 3034 |
| BisI | GCNGC | 6 cut(s) | 211, 1031, 1477, 2654, 2787, 3030 |
| BlsI | GCNGC | 6 cut(s) | 212, 1032, 1478, 2655, 2788, 3031 |
| BmcAI | AGTACT | 3 cut(s) | 524, 1444, 1807 |
| Bme1390I | CCNGG | 6 cut(s) | 70, 998, 1201, 1712, 2638, 2675 |
| Bme18I | GGWCC | 3 cut(s) | 2399, 2670, 2876 |
| BmgT120I | GGNCC | 4 cut(s) | 1548, 2399, 2670, 2876 |
| BmiI | GGNNCC | 7 cut(s) | 92, 995, 1959, 2208, 2312, 2672, 3048 |
| BmrFI | CCNGG | 6 cut(s) | 70, 998, 1201, 1712, 2638, 2675 |
| BmrI | ACTGGG | 1 cut(s) | 535 |
| BmsI | GCATC | 4 cut(s) | 1663, 1816, 2976, 3178 |
| BmuI | ACTGGG | 1 cut(s) | 535 |
| BpiI | GAAGAC | 2 cut(s) | 249, 791 |
| BpmI | CTGGAG | 1 cut(s) | 447 |
| Bpu10I | CCTNAGC | 1 cut(s) | 224 |
| Bpu14I | TTCGAA | 1 cut(s) | 1460 |
| BpuEI | CTTGAG | 3 cut(s) | 634, 2144, 2279 |
| BpuMI | CCSGG | 1 cut(s) | 2638 |
| Bsa29I | ATCGAT | 1 cut(s) | 2755 |
| BsaAI | YACGTR | 4 cut(s) | 161, 1211, 1743, 3247 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1677, 2751 |
| BsaJI | CCNNGG | 9 cut(s) | 728, 1236, 1371, 1577, 1682, 2561, 2673, 2674, 3192 |
| BsaWI | WCCGGW | 3 cut(s) | 655, 811, 1647 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 26, 29, 59, 698, 728, 1601, 1631 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1003, 1351, 1352, 1664, 1717, 3450 |
| Bse118I | RCCGGY | 1 cut(s) | 1117 |
| Bse1I | ACTGG | 4 cut(s) | 530, 1149, 2139, 3430 |
| Bse21I | CCTNAGG | 1 cut(s) | 3171 |
| Bse3DI | GCAATG | 1 cut(s) | 3145 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1677, 2751 |
| BseAI | TCCGGA | 1 cut(s) | 1647 |
| BseBI | CCWGG | 5 cut(s) | 70, 998, 1201, 1712, 2675 |
| BseCI | ATCGAT | 1 cut(s) | 2755 |
| BseDI | CCNNGG | 9 cut(s) | 728, 1236, 1371, 1577, 1682, 2561, 2673, 2674, 3192 |
| BseGI | GGATG | 8 cut(s) | 610, 1831, 2125, 2148, 2230, 3181, 3343, 3424 |
| BseJI | GATNNNNATC | 2 cut(s) | 1677, 2751 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1003, 1351, 1352, 1664, 1717, 3450 |
| BseMI | GCAATG | 1 cut(s) | 3145 |
| BseMII | CTCAG | 6 cut(s) | 215, 303, 510, 1425, 2757, 3276 |
| BseNI | ACTGG | 4 cut(s) | 530, 1149, 2139, 3430 |
| BseRI | GAGGAG | 3 cut(s) | 631, 782, 961 |
| BseXI | GCAGC | 4 cut(s) | 1017, 2665, 2773, 3016 |
| BseYI | CCCAGC | 4 cut(s) | 122, 2194, 2474, 3162 |
| BsgI | GTGCAG | 1 cut(s) | 1199 |
| BshFI | GGCC | 4 cut(s) | 1199, 1550, 1687, 3443 |
| BshVI | ATCGAT | 1 cut(s) | 2755 |
| BsiSI | CCGG | 6 cut(s) | 625, 656, 812, 1118, 1648, 2637 |
| BslFI | GGGAC | 2 cut(s) | 1893, 2656 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1003, 1351, 1352, 1664, 1717, 3450 |
| BsmAI | GTCTC | 5 cut(s) | 47, 1869, 1878, 2162, 2696 |
| BsmBI | CGTCTC | 1 cut(s) | 1869 |
| BsmFI | GGGAC | 2 cut(s) | 1893, 2656 |
| BsmI | GAATGC | 2 cut(s) | 1736, 2243 |
| BsnI | GGCC | 4 cut(s) | 1199, 1550, 1687, 3443 |
| Bsp119I | TTCGAA | 1 cut(s) | 1460 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2013 |
| Bsp13I | TCCGGA | 1 cut(s) | 1647 |
| Bsp1407I | TGTACA | 1 cut(s) | 2976 |
| Bsp19I | CCATGG | 1 cut(s) | 1371 |
| BspACI | CCGC | 6 cut(s) | 211, 634, 1476, 2203, 2789, 3375 |
| BspANI | GGCC | 4 cut(s) | 1199, 1550, 1687, 3443 |
| BspCNI | CTCAG | 6 cut(s) | 216, 304, 511, 1424, 2758, 3277 |
| BspDI | ATCGAT | 1 cut(s) | 2755 |
| BspEI | TCCGGA | 1 cut(s) | 1647 |
| BspLI | GGNNCC | 7 cut(s) | 92, 995, 1959, 2208, 2312, 2672, 3048 |
| BspMAI | CTGCAG | 2 cut(s) | 1393, 3034 |
| BspMI | ACCTGC | 1 cut(s) | 1786 |
| BspPI | GGATC | 7 cut(s) | 539, 2116, 2201, 2214, 2760, 2768, 3258 |
| BspT104I | TTCGAA | 1 cut(s) | 1460 |
| BspTI | CTTAAG | 1 cut(s) | 2852 |
| BsrBI | CCGCTC | 1 cut(s) | 634 |
| BsrDI | GCAATG | 1 cut(s) | 3145 |
| BsrFI | RCCGGY | 1 cut(s) | 1117 |
| BsrGI | TGTACA | 1 cut(s) | 2976 |
| BsrI | ACTGG | 4 cut(s) | 530, 1149, 2139, 3430 |
| BssAI | RCCGGY | 1 cut(s) | 1117 |
| BssECI | CCNNGG | 9 cut(s) | 728, 1236, 1371, 1577, 1682, 2561, 2673, 2674, 3192 |
| BssSI | CACGAG | 1 cut(s) | 205 |
| BssT1I | CCWWGG | 6 cut(s) | 1236, 1371, 1577, 1682, 2561, 3192 |
| Bst2BI | CACGAG | 1 cut(s) | 205 |
| Bst2UI | CCWGG | 5 cut(s) | 70, 998, 1201, 1712, 2675 |
| Bst6I | CTCTTC | 3 cut(s) | 906, 1494, 2561 |
| BstAFI | CTTAAG | 1 cut(s) | 2852 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1523 |
| BstAUI | TGTACA | 1 cut(s) | 2976 |
| BstBAI | YACGTR | 4 cut(s) | 161, 1211, 1743, 3247 |
| BstBI | TTCGAA | 1 cut(s) | 1460 |
| BstC8I | GCNNGC | 4 cut(s) | 681, 1119, 2626, 2849 |
| BstDSI | CCRYGG | 2 cut(s) | 728, 1371 |
| BstEII | GGTNACC | 1 cut(s) | 651 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| BstF5I | GGATG | 8 cut(s) | 610, 1831, 2125, 2148, 2230, 3181, 3343, 3424 |
| BstH2I | RGCGCY | 1 cut(s) | 3331 |
| BstHHI | GCGC | 1 cut(s) | 3330 |
| BstMAI | GTCTC | 5 cut(s) | 47, 1869, 1878, 2162, 2696 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 875, 1205, 1523, 1733, 1787, 2200, 2308 |
| BstNI | CCWGG | 5 cut(s) | 70, 998, 1201, 1712, 2675 |
| BstNSI | RCATGY | 2 cut(s) | 2809, 3149 |
| BstPI | GGTNACC | 1 cut(s) | 651 |
| BstSCI | CCNGG | 6 cut(s) | 68, 996, 1199, 1710, 2636, 2673 |
| BstSFI | CTRYAG | 4 cut(s) | 1389, 2406, 2886, 3030 |
| BstV1I | GCAGC | 4 cut(s) | 1017, 2665, 2773, 3016 |
| BstV2I | GAAGAC | 2 cut(s) | 249, 791 |
| BstX2I | RGATCY | 4 cut(s) | 2108, 2206, 2947, 3034 |
| BstYI | RGATCY | 4 cut(s) | 2108, 2206, 2947, 3034 |
| Bsu15I | ATCGAT | 1 cut(s) | 2755 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3171 |
| BsuRI | GGCC | 4 cut(s) | 1199, 1550, 1687, 3443 |
| BsuTUI | ATCGAT | 1 cut(s) | 2755 |
| BtgI | CCRYGG | 2 cut(s) | 728, 1371 |
| BtsCI | GGATG | 8 cut(s) | 610, 1831, 2125, 2148, 2230, 3181, 3343, 3424 |
| BtsIMutI | CAGTG | 4 cut(s) | 2134, 2763, 3282, 3439 |
| BveI | ACCTGC | 1 cut(s) | 1786 |
| Cac8I | GCNNGC | 4 cut(s) | 681, 1119, 2626, 2849 |
| CfoI | GCGC | 1 cut(s) | 3330 |
| Cfr10I | RCCGGY | 1 cut(s) | 1117 |
| Cfr13I | GGNCC | 4 cut(s) | 1548, 2399, 2670, 2876 |
| ClaI | ATCGAT | 1 cut(s) | 2755 |
| CsiI | ACCWGGT | 2 cut(s) | 68, 1710 |
| Csp6I | GTAC | 5 cut(s) | 523, 1443, 1806, 2088, 2977 |
| CviAII | CATG | 9 cut(s) | 1144, 1372, 2053, 2303, 2797, 2806, 2830, 3146, 3308 |
| CviQI | GTAC | 5 cut(s) | 523, 1443, 1806, 2088, 2977 |
| DraI | TTTAAA | 1 cut(s) | 1174 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1153 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1153 |
| EaeI | YGGCCR | 1 cut(s) | 1197 |
| Eam1104I | CTCTTC | 3 cut(s) | 906, 1494, 2561 |
| EarI | CTCTTC | 3 cut(s) | 906, 1494, 2561 |
| Eco130I | CCWWGG | 6 cut(s) | 1236, 1371, 1577, 1682, 2561, 3192 |
| Eco24I | GRGCYC | 1 cut(s) | 2013 |
| Eco47I | GGWCC | 3 cut(s) | 2399, 2670, 2876 |
| Eco47III | AGCGCT | 1 cut(s) | 3329 |
| Eco57I | CTGAAG | 1 cut(s) | 1869 |
| Eco72I | CACGTG | 2 cut(s) | 1211, 3247 |
| Eco81I | CCTNAGG | 1 cut(s) | 3171 |
| Eco91I | GGTNACC | 1 cut(s) | 651 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2399 |
| EcoO65I | GGTNACC | 1 cut(s) | 651 |
| EcoRI | GAATTC | 2 cut(s) | 2423, 2792 |
| EcoRII | CCWGG | 5 cut(s) | 68, 996, 1199, 1710, 2673 |
| EcoT14I | CCWWGG | 6 cut(s) | 1236, 1371, 1577, 1682, 2561, 3192 |
| EcoT22I | ATGCAT | 1 cut(s) | 1738 |
| EcoT38I | GRGCYC | 1 cut(s) | 2013 |
| ErhI | CCWWGG | 6 cut(s) | 1236, 1371, 1577, 1682, 2561, 3192 |
| Esp3I | CGTCTC | 1 cut(s) | 1869 |
| FaeI | CATG | 9 cut(s) | 1147, 1375, 2056, 2306, 2800, 2809, 2833, 3149, 3311 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3219, 3251 |
| FaqI | GGGAC | 2 cut(s) | 1893, 2656 |
| FatI | CATG | 9 cut(s) | 1143, 1371, 2052, 2302, 2796, 2805, 2829, 3145, 3307 |
| FauI | CCCGC | 1 cut(s) | 2196 |
| FblI | GTMKAC | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 6 cut(s) | 211, 1031, 1477, 2654, 2787, 3030 |
| FokI | GGATG | 8 cut(s) | 617, 1838, 2132, 2155, 2237, 3188, 3350, 3431 |
| FriOI | GRGCYC | 1 cut(s) | 2013 |
| Fsp4HI | GCNGC | 6 cut(s) | 211, 1031, 1477, 2654, 2787, 3030 |
| FspBI | CTAG | 6 cut(s) | 432, 834, 1508, 1605, 1973, 2604 |
| GlaI | GCGC | 1 cut(s) | 3329 |
| GluI | GCNGC | 6 cut(s) | 211, 1031, 1477, 2654, 2787, 3030 |
| GsaI | CCCAGC | 4 cut(s) | 126, 2198, 2478, 3166 |
| GsuI | CTGGAG | 1 cut(s) | 447 |
| HaeII | RGCGCY | 1 cut(s) | 3331 |
| HaeIII | GGCC | 4 cut(s) | 1199, 1550, 1687, 3443 |
| HapII | CCGG | 6 cut(s) | 625, 656, 812, 1118, 1648, 2637 |
| HhaI | GCGC | 1 cut(s) | 3330 |
| Hin1II | CATG | 9 cut(s) | 1147, 1375, 2056, 2306, 2800, 2809, 2833, 3149, 3311 |
| Hin6I | GCGC | 1 cut(s) | 3328 |
| HinP1I | GCGC | 1 cut(s) | 3328 |
| HincII | GTYRAC | 2 cut(s) | 200, 1417 |
| HindII | GTYRAC | 2 cut(s) | 200, 1417 |
| HindIII | AAGCTT | 2 cut(s) | 180, 2849 |
| HpaII | CCGG | 6 cut(s) | 625, 656, 812, 1118, 1648, 2637 |
| Hpy166II | GTNNAC | 9 cut(s) | 200, 256, 664, 1417, 1775, 2132, 2686, 2979, 3380 |
| Hpy8I | GTNNAC | 9 cut(s) | 200, 256, 664, 1417, 1775, 2132, 2686, 2979, 3380 |
| HpyCH4IV | ACGT | 4 cut(s) | 160, 1210, 1742, 3246 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 875, 1205, 1523, 1733, 1787, 2200, 2308 |
| HpySE526I | ACGT | 4 cut(s) | 160, 1210, 1742, 3246 |
| Hsp92II | CATG | 9 cut(s) | 1147, 1375, 2056, 2306, 2800, 2809, 2833, 3149, 3311 |
| HspAI | GCGC | 1 cut(s) | 3328 |
| Kpn2I | TCCGGA | 1 cut(s) | 1647 |
| KroI | GCCGGC | 1 cut(s) | 1117 |
| KroNI | GCCGGC | 1 cut(s) | 1119 |
| LmnI | GCTCC | 8 cut(s) | 4, 428, 1325, 1650, 2316, 3232, 3294, 3325 |
| Lsp1109I | GCAGC | 4 cut(s) | 1017, 2665, 2773, 3016 |
| LweI | GCATC | 4 cut(s) | 1663, 1816, 2976, 3178 |
| MabI | ACCWGGT | 2 cut(s) | 68, 1710 |
| MaeI | CTAG | 6 cut(s) | 432, 834, 1508, 1605, 1973, 2604 |
| MaeII | ACGT | 4 cut(s) | 160, 1210, 1742, 3246 |
| MaeIII | GTNAC | 5 cut(s) | 161, 651, 2606, 3211, 3421 |
| MbiI | CCGCTC | 1 cut(s) | 634 |
| MflI | RGATCY | 4 cut(s) | 2108, 2206, 2947, 3034 |
| MhlI | GDGCHC | 1 cut(s) | 2013 |
| MlsI | TGGCCA | 1 cut(s) | 1199 |
| MluNI | TGGCCA | 1 cut(s) | 1199 |
| MlyI | GAGTC | 3 cut(s) | 779, 1403, 2681 |
| MmeI | TCCRAC | 6 cut(s) | 50, 465, 473, 832, 1386, 2547 |
| Mox20I | TGGCCA | 1 cut(s) | 1199 |
| Mph1103I | ATGCAT | 1 cut(s) | 1738 |
| MroI | TCCGGA | 1 cut(s) | 1647 |
| MroNI | GCCGGC | 1 cut(s) | 1117 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1011, 1659 |
| MscI | TGGCCA | 1 cut(s) | 1199 |
| MseI | TTAA | 9 cut(s) | 263, 440, 597, 1173, 1188, 2019, 2429, 2718, 2853 |
| Msp20I | TGGCCA | 1 cut(s) | 1199 |
| MspA1I | CMGCKG | 1 cut(s) | 3375 |
| MspCI | CTTAAG | 1 cut(s) | 2852 |
| MspI | CCGG | 6 cut(s) | 625, 656, 812, 1118, 1648, 2637 |
| MspR9I | CCNGG | 6 cut(s) | 70, 998, 1201, 1712, 2638, 2675 |
| Mva1269I | GAATGC | 2 cut(s) | 1736, 2243 |
| MvaI | CCWGG | 5 cut(s) | 70, 998, 1201, 1712, 2675 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 875, 1205, 1523, 1733, 1787, 2200, 2308 |
| NaeI | GCCGGC | 1 cut(s) | 1119 |
| NciI | CCSGG | 1 cut(s) | 2638 |
| NcoI | CCATGG | 1 cut(s) | 1371 |
| NgoMIV | GCCGGC | 1 cut(s) | 1117 |
| NlaIII | CATG | 9 cut(s) | 1147, 1375, 2056, 2306, 2800, 2809, 2833, 3149, 3311 |
| NlaIV | GGNNCC | 7 cut(s) | 92, 995, 1959, 2208, 2312, 2672, 3048 |
| NmuCI | GTSAC | 2 cut(s) | 651, 2606 |
| NsiI | ATGCAT | 1 cut(s) | 1738 |
| NspI | RCATGY | 2 cut(s) | 2809, 3149 |
| NspV | TTCGAA | 1 cut(s) | 1460 |
| PaqCI | CACCTGC | 1 cut(s) | 1786 |
| PasI | CCCWGGG | 1 cut(s) | 2674 |
| PctI | GAATGC | 2 cut(s) | 1736, 2243 |
| PdiI | GCCGGC | 1 cut(s) | 1119 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1011, 1659 |
| PflFI | GACNNNGTC | 1 cut(s) | 1412 |
| PkrI | GCNGC | 6 cut(s) | 212, 1032, 1478, 2655, 2788, 3031 |
| PleI | GAGTC | 3 cut(s) | 778, 1403, 2681 |
| PmaCI | CACGTG | 2 cut(s) | 1211, 3247 |
| PmlI | CACGTG | 2 cut(s) | 1211, 3247 |
| PpsI | GAGTC | 3 cut(s) | 778, 1403, 2681 |
| Ppu21I | YACGTR | 4 cut(s) | 161, 1211, 1743, 3247 |
| PpuMI | RGGWCCY | 1 cut(s) | 2399 |
| Psp5II | RGGWCCY | 1 cut(s) | 2399 |
| Psp6I | CCWGG | 5 cut(s) | 68, 996, 1199, 1710, 2673 |
| PspCI | CACGTG | 2 cut(s) | 1211, 3247 |
| PspEI | GGTNACC | 1 cut(s) | 651 |
| PspFI | CCCAGC | 4 cut(s) | 122, 2194, 2474, 3162 |
| PspGI | CCWGG | 5 cut(s) | 68, 996, 1199, 1710, 2673 |
| PspN4I | GGNNCC | 7 cut(s) | 92, 995, 1959, 2208, 2312, 2672, 3048 |
| PspPI | GGNCC | 4 cut(s) | 1548, 2399, 2670, 2876 |
| PspPPI | RGGWCCY | 1 cut(s) | 2399 |
| PstI | CTGCAG | 2 cut(s) | 1393, 3034 |
| PsuI | RGATCY | 4 cut(s) | 2108, 2206, 2947, 3034 |
| PsyI | GACNNNGTC | 1 cut(s) | 1412 |
| RsaI | GTAC | 5 cut(s) | 524, 1444, 1807, 2089, 2978 |
| RsaNI | GTAC | 5 cut(s) | 523, 1443, 1806, 2088, 2977 |
| SalI | GTCGAC | 1 cut(s) | 198 |
| SaqAI | TTAA | 9 cut(s) | 263, 440, 597, 1173, 1188, 2019, 2429, 2718, 2853 |
| SatI | GCNGC | 6 cut(s) | 211, 1031, 1477, 2654, 2787, 3030 |
| Sau96I | GGNCC | 4 cut(s) | 1548, 2399, 2670, 2876 |
| ScaI | AGTACT | 3 cut(s) | 524, 1444, 1807 |
| SchI | GAGTC | 3 cut(s) | 779, 1403, 2681 |
| ScrFI | CCNGG | 6 cut(s) | 70, 998, 1201, 1712, 2638, 2675 |
| SduI | GDGCHC | 1 cut(s) | 2013 |
| SexAI | ACCWGGT | 2 cut(s) | 68, 1710 |
| SfaNI | GCATC | 4 cut(s) | 1663, 1816, 2976, 3178 |
| SfcI | CTRYAG | 4 cut(s) | 1389, 2406, 2886, 3030 |
| SfuI | TTCGAA | 1 cut(s) | 1460 |
| SinI | GGWCC | 3 cut(s) | 2399, 2670, 2876 |
| SmlI | CTYRAG | 4 cut(s) | 613, 2159, 2258, 2852 |
| SmoI | CTYRAG | 4 cut(s) | 613, 2159, 2258, 2852 |
| SsiI | CCGC | 6 cut(s) | 211, 634, 1476, 2203, 2789, 3375 |
| SspI | AATATT | 1 cut(s) | 301 |
| SspMI | CTAG | 6 cut(s) | 432, 834, 1508, 1605, 1973, 2604 |
| StyD4I | CCNGG | 6 cut(s) | 68, 996, 1199, 1710, 2636, 2673 |
| StyI | CCWWGG | 6 cut(s) | 1236, 1371, 1577, 1682, 2561, 3192 |
| TaiI | ACGT | 4 cut(s) | 163, 1213, 1745, 3249 |
| TaqI | TCGA | 7 cut(s) | 199, 1460, 2294, 2334, 2755, 2970, 3184 |
| TaqII | GACCGA | 1 cut(s) | 3415 |
| TatI | WGTACW | 4 cut(s) | 522, 1442, 1805, 2976 |
| TauI | GCSGC | 2 cut(s) | 213, 1479 |
| Tru1I | TTAA | 9 cut(s) | 263, 440, 597, 1173, 1188, 2019, 2429, 2718, 2853 |
| Tru9I | TTAA | 9 cut(s) | 263, 440, 597, 1173, 1188, 2019, 2429, 2718, 2853 |
| TscAI | CASTG | 4 cut(s) | 2134, 2770, 3289, 3439 |
| TseFI | GTSAC | 2 cut(s) | 651, 2606 |
| TseI | GCWGC | 4 cut(s) | 1030, 2653, 2786, 3029 |
| Tsp45I | GTSAC | 2 cut(s) | 651, 2606 |
| TspGWI | ACGGA | 4 cut(s) | 717, 1970, 2199, 2464 |
| TspRI | CASTG | 4 cut(s) | 2134, 2770, 3289, 3439 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1412 |
| Vha464I | CTTAAG | 1 cut(s) | 2852 |
| VpaK11BI | GGWCC | 3 cut(s) | 2399, 2670, 2876 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| XbaI | TCTAGA | 2 cut(s) | 833, 1507 |
| XceI | RCATGY | 2 cut(s) | 2809, 3149 |
| XmiI | GTMKAC | 1 cut(s) | 199 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1011, 1659 |
| XspI | CTAG | 6 cut(s) | 432, 834, 1508, 1605, 1973, 2604 |
| ZrmI | AGTACT | 3 cut(s) | 524, 1444, 1807 |
| Zsp2I | ATGCAT | 1 cut(s) | 1738 |