FvH4_7g16560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005086
Physical Location & Seq
Reverse (-)
14188905 .. 14189579
675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16560.t1

Sequence Viewer

Length: 675 bp
ATGATGAGGAGAAAGATGAAAGCAAGACAGGAGAAAGAGGTGTTAGAAAAGGGCAGCCTGGAAGTGGAAGTTGTTCAAGAATCATCAGAGCTGCCTCTGGTATCTTTTGAAAAGCCTAATCTAGATAAGAAAGAACTTATGAGCAGTATTGTGAGTGCAAAGTCGTTAAATGGTAAGCCGGCTATACCAGATTCTTCAAATTCCATGATCAATAAGTCATCGGAATTTGATTTTAAAGTGCAGGAGATGAAAGTTATGGCCAGGAAAGCACGTGAAATTGAGCAAATGGAACATTCCTTGGTTGGTAATGATGAGAAAGAAACTCAGCCTGTGAATGATAAGTTGCCTGATAAAATGAAAGTTGTTGAAAAGCATATAGAAGAAGGGGTGAATACTCTAACCCACCTTTTGGACGGAGATTGCAGACAAGCTATGGGTAGCGATATTACTGCAGTTTTTGGTAAGCTGGACTTAGTCGAGGATGAGGATATTCAGTCTTCTAGTACTTTATATAGAGAAGTTTCAGATGATATGCAAAGCACTAAACACCAGAAACATAGTGAAGAGAATCTAGATTTGGCAGATGTTGCCCCTTTAGTTGATTCAAAGGGGGCCAAGAATAGTTCTGTTGAAGTAAAACCAAAGGTCATAATGTCAGTAAAAGAAGCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.13

Weight (kDa)

5.23

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 2 cut(s) 199, 224
AcvI CACGTG 1 cut(s) 272
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 2 cut(s) 64, 409
AgsI TTSAA 6 cut(s) 77, 110, 198, 368, 606, 632
AjnI CCWGG 2 cut(s) 57, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 4 cut(s) 91, 431, 466, 668
AluI AGCT 4 cut(s) 91, 431, 466, 668
AoxI GGCC 2 cut(s) 258, 612
ApeKI GCWGC 2 cut(s) 54, 91
ApoI RAATTY 2 cut(s) 199, 224
Asp700I GAANNNNTTC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 612
AsuHPI GGTGA 1 cut(s) 400
BalI TGGCCA 1 cut(s) 260
BbrPI CACGTG 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 66, 78
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 2 cut(s) 59, 262
BclI TGATCA 1 cut(s) 207
BfaI CTAG 4 cut(s) 122, 501, 572, 669
BfmI CTRYAG 1 cut(s) 450
BisI GCNGC 2 cut(s) 55, 92
BlsI GCNGC 2 cut(s) 56, 93
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 2 cut(s) 59, 262
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 2 cut(s) 59, 262
BpiI GAAGAC 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 409
Bse118I RCCGGY 1 cut(s) 178
BseBI CCWGG 2 cut(s) 59, 262
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 64, 409
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 66, 78
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 2 cut(s) 260, 614
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 64, 409
BsnI GGCC 2 cut(s) 260, 614
Bsp143I GATC 1 cut(s) 207
BspANI GGCC 2 cut(s) 260, 614
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 613
BspMAI CTGCAG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 59, 262
Bst6I CTCTTC 1 cut(s) 558
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 324, 472
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 266, 587
BstNI CCWGG 2 cut(s) 59, 262
BstSCI CCNGG 2 cut(s) 57, 260
BstSFI CTRYAG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 66, 78
BstV2I GAAGAC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 260, 614
BtsCI GGATG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 612
Csp6I GTAC 1 cut(s) 504
CviAII CATG 1 cut(s) 205
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 2 cut(s) 324, 472
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
DraI TTTAAA 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 297
Eco72I CACGTG 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 57, 260
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 208
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FatI CATG 1 cut(s) 204
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 55, 92
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 2 cut(s) 55, 92
FspBI CTAG 4 cut(s) 122, 501, 572, 669
GluI GCNGC 2 cut(s) 55, 92
HaeIII GGCC 2 cut(s) 260, 614
HapII CCGG 1 cut(s) 179
Hin1II CATG 1 cut(s) 208
HinfI GANTC 4 cut(s) 80, 191, 568, 602
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 400
Hpy188I TCNGA 3 cut(s) 88, 223, 526
Hpy188III TCNNGA 3 cut(s) 77, 122, 572
HpyAV CCTTC 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 158, 241, 423, 452, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 587
HpyF3I CTNAG 2 cut(s) 324, 472
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 1 cut(s) 208
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 207
Lsp1109I GCAGC 2 cut(s) 66, 78
MaeI CTAG 4 cut(s) 122, 501, 572, 669
MaeII ACGT 1 cut(s) 271
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 4 cut(s) 186, 392, 489, 575
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 3 cut(s) 199, 224, 276
MluNI TGGCCA 1 cut(s) 260
MnlI CCTC 4 cut(s) 31, 105, 472, 478
Mox20I TGGCCA 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 72
MscI TGGCCA 1 cut(s) 260
MseI TTAA 2 cut(s) 167, 234
Msp20I TGGCCA 1 cut(s) 260
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 59, 262
MvaI CCWGG 2 cut(s) 59, 262
MwoI GCNNNNNNNGC 2 cut(s) 266, 587
NaeI GCCGGC 1 cut(s) 180
NdeII GATC 1 cut(s) 207
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 613
PdiI GCCGGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 4 cut(s) 80, 191, 568, 602
PflFI GACNNNGTC 1 cut(s) 473
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 2 cut(s) 56, 93
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 57, 260
PspCI CACGTG 1 cut(s) 272
PspGI CCWGG 2 cut(s) 57, 260
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 1 cut(s) 612
PstI CTGCAG 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SaqAI TTAA 2 cut(s) 167, 234
SatI GCNGC 2 cut(s) 55, 92
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 612
ScaI AGTACT 1 cut(s) 505
ScrFI CCNGG 2 cut(s) 59, 262
SetI ASST 9 cut(s) 42, 93, 274, 408, 433, 468, 648, 670, 674
SfcI CTRYAG 1 cut(s) 450
Sse9I AATT 3 cut(s) 199, 224, 276
SspMI CTAG 4 cut(s) 122, 501, 572, 669
StyD4I CCNGG 2 cut(s) 57, 260
StyI CCWWGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 477
TasI AATT 3 cut(s) 199, 224, 276
TatI WGTACW 1 cut(s) 503
TfiI GAWTC 4 cut(s) 80, 191, 568, 602
Tru1I TTAA 2 cut(s) 167, 234
Tru9I TTAA 2 cut(s) 167, 234
TseI GCWGC 2 cut(s) 54, 91
TspDTI ATGAA 3 cut(s) 32, 263, 371
TspGWI ACGGA 1 cut(s) 429
Tth111I GACNNNGTC 1 cut(s) 473
Van91I CCANNNNNTGG 1 cut(s) 409
XapI RAATTY 2 cut(s) 199, 224
XbaI TCTAGA 2 cut(s) 121, 571
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 4 cut(s) 122, 501, 572, 669
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.