Rmu_sc0002556.1_g000023

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002556.1
Physical Location & Seq
Reverse (-)
83864 .. 86841
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002556.1_g000023.1.cds

Sequence Viewer

Length: 1779 bp
atgcttggggttttggaggttgtgttgctccatccggcggcccgtccctgtgacattgtcgtcggactagtagatgtcggtgagtccaccggcaaggggcagtggtgtagttggggccggaacggaaagagtgcgtcgtctccgatcaacgattgcgtgggggatgtgcgcaagggcaaatcttcattagaccatgaaggtaatggcggcatttcattgacagaacctactcagaaacaagagaattggatagaggaaaattttagtgaatttgagcccatagttcagaagattggagttggttttagagataattacatggtttcaagaaaaaaagaagatcaagaatcaattaccaatatagcagagcttggatctgataaggatgatgacagtgaactggaatggatgaaagatgagagtcttcgggaaattgttttgcaagtccgagaaaatgaactgggagggcgggatccgttttatatgatggatactgaagataaggtcacattcttcaagggtcttgagaagaaagttgaaaaagagaatcaaaagctgtcaaaactgcatgggtggctccactcaaacattgaaaatctcgattatggggcagatggtatcagcatatatgacccaccagaaaaaattataccacgctggaaaggtcctcctatagagaagagtcctgaattcttaaattattttcaagagcagcggaaggcaattttttctgaaaatgctgggatttcatatcctgtcaagaaagatgataacttgcttgagaagtcaataccccaatccaatgagaatattccaaattctttatcagccaatgacccaaggaagaagaataaaacagattccaagacggttatagaagctagcgacggttctgttagagctggcaaaaagtctgggaaggaattttggcaacacacaaagaaatggtcccagggatttgtggagtcctacaatgcagagacagacccagaaattaaaaccactatgaaggacatggggaaggatttggatcggtggatcactgaaaaagaaatacaggaagctgctgagtttatgaccaacatgcctgaaaaaagtaaggagttcatggaaaagaaacttagcaagcttaagagagagatggaattgtttggaccacaagctgtagtgagcaaataccgtgaatatgcagaagtgaaggaagaagattatttgtggtggttagatcttccttatgtgctgtgcatcgagttgtacacagatgatcatgaagaacaaagaataggattttattcattggagatggctcaagatcttgaattggaaccaaagccgtatcatatcattggttttgaggacactaatgactgcaaaaacctttgttatatcatccaagctcaaatggaaatgcttgggaatggccatgcatttgttgtgccccagccacctaaggatgtttttcgagatgccaaggcaaatggctttggtgtaactgtaattagaaaaggggagcttcaacttcacgtggatcaaactttggaagaagtggaggaacagatcactgagattgggagcaaaatataccatgacagaattatgcaggagcgctctatggatgtaagctcattgatgaaaggtgtttttggtttcagcggtaaacctattaggaggaaaaaaacgaaaaagatgatgaaggatgtaactggtttcagtggcaagcccactaaggggaaaagatcaaagcagatgctgaagaagcctaaacagaaagaaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

592

Amino Acids

67.91

Weight (kDa)

5.51

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
Acc16I TGCGCA 1 cut(s) 170
AciI CCGC 5 cut(s) 38, 207, 469, 715, 1653
AclWI GGATC 6 cut(s) 382, 467, 480, 1038, 1046, 1536
AcoI YGGCCR 1 cut(s) 1420
AcsI RAATTY 5 cut(s) 259, 269, 689, 817, 923
AcuI CTGAAG 2 cut(s) 516, 1772
AcvI CACGTG 1 cut(s) 1525
AfaI GTAC 1 cut(s) 1256
AfeI AGCGCT 1 cut(s) 1607
AfiI CCNNNNNNNGG 4 cut(s) 37, 96, 1727, 1728
AflII CTTAAG 1 cut(s) 1130
AgsI TTSAA 7 cut(s) 327, 517, 539, 593, 707, 1319, 1517
AhlI ACTAGT 1 cut(s) 67
AjnI CCWGG 1 cut(s) 951
Alw26I GTCTC 2 cut(s) 144, 974
AlwI GGATC 6 cut(s) 382, 467, 480, 1038, 1046, 1536
AlwNI CAGNNNCTG 1 cut(s) 1750
Aor51HI AGCGCT 1 cut(s) 1607
AoxI GGCC 3 cut(s) 39, 115, 1420
ApeKI GCWGC 2 cut(s) 712, 1064
ApoI RAATTY 5 cut(s) 259, 269, 689, 817, 923
ArsI GACNNNNNNTTYG 2 cut(s) 932, 964
AspLEI GCGC 2 cut(s) 171, 1608
AspS9I GGNCC 5 cut(s) 40, 115, 665, 948, 1154
AsuHPI GGTGA 1 cut(s) 92
AsuNHI GCTAGC 1 cut(s) 881
AvaII GGWCC 3 cut(s) 665, 948, 1154
AxyI CCTNAGG 1 cut(s) 1449
BaeGI GKGCMC 1 cut(s) 1440
BalI TGGCCA 1 cut(s) 1422
BamHI GGATCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 279
BbrPI CACGTG 1 cut(s) 1525
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 724, 1051
BccI CCATC 5 cut(s) 39, 481, 608, 1135, 1297
BceAI ACGGC 1 cut(s) 1318
BciT130I CCWGG 1 cut(s) 953
BciVI GTATCC 1 cut(s) 484
BclI TGATCA 1 cut(s) 1264
BcoDI GTCTC 2 cut(s) 144, 974
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 2 cut(s) 68, 882
BfmI CTRYAG 2 cut(s) 672, 1164
BfoI RGCGCY 1 cut(s) 1609
BfrI CTTAAG 1 cut(s) 1130
BfuI GTATCC 1 cut(s) 484
BglII AGATCT 2 cut(s) 1225, 1312
BisI GCNGC 4 cut(s) 39, 208, 713, 1065
BlsI GCNGC 4 cut(s) 40, 209, 714, 1066
Bme1390I CCNGG 1 cut(s) 953
Bme18I GGWCC 3 cut(s) 665, 948, 1154
BmgT120I GGNCC 5 cut(s) 40, 115, 665, 948, 1154
BmiI GGNNCC 5 cut(s) 116, 474, 578, 950, 1326
BmrFI CCNGG 1 cut(s) 953
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 3 cut(s) 1254, 1456, 1737
BmtI GCTAGC 1 cut(s) 885
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 416
BpuEI CTTGAG 3 cut(s) 545, 800, 1293
BsaAI YACGTR 1 cut(s) 1525
BsaBI GATNNNNATC 1 cut(s) 1029
BsaJI CCNNGG 4 cut(s) 839, 951, 952, 1470
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 96, 1727, 1728
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 405, 465, 1708
Bse21I CCTNAGG 1 cut(s) 1449
Bse8I GATNNNNATC 1 cut(s) 1029
BseBI CCWGG 1 cut(s) 953
BseDI CCNNGG 4 cut(s) 839, 951, 952, 1470
BseGI GGATG 8 cut(s) 31, 169, 391, 414, 1389, 1459, 1621, 1702
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 4 cut(s) 37, 96, 1727, 1728
BseMII CTCAG 3 cut(s) 245, 1059, 1554
BseNI ACTGG 3 cut(s) 405, 465, 1708
BseSI GKGCMC 1 cut(s) 1440
BseXI GCAGC 2 cut(s) 724, 1051
BseYI CCCAGC 2 cut(s) 740, 1440
BshFI GGCC 3 cut(s) 41, 117, 1422
BsiSI CCGG 3 cut(s) 35, 90, 118
BslFI GGGAC 2 cut(s) 30, 934
BslI CCNNNNNNNGG 4 cut(s) 37, 96, 1727, 1728
BsmAI GTCTC 2 cut(s) 144, 974
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 30, 934
BsnI GGCC 3 cut(s) 41, 117, 1422
Bsp1286I GDGCHC 2 cut(s) 279, 1440
Bsp1407I TGTACA 1 cut(s) 1254
BspACI CCGC 5 cut(s) 38, 207, 469, 715, 1653
BspANI GGCC 3 cut(s) 41, 117, 1422
BspCNI CTCAG 3 cut(s) 244, 1060, 1555
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 5 cut(s) 116, 474, 578, 950, 1326
BspOI GCTAGC 1 cut(s) 885
BspPI GGATC 6 cut(s) 382, 467, 480, 1038, 1046, 1536
BspTI CTTAAG 1 cut(s) 1130
BsrFI RCCGGY 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 1254
BsrI ACTGG 3 cut(s) 405, 465, 1708
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 4 cut(s) 839, 951, 952, 1470
BssT1I CCWWGG 2 cut(s) 839, 1470
Bst2UI CCWGG 1 cut(s) 953
Bst4CI ACNGT 5 cut(s) 395, 871, 890, 1181, 1495
Bst6I CTCTTC 1 cut(s) 674
BstAFI CTTAAG 1 cut(s) 1130
BstAUI TGTACA 1 cut(s) 1254
BstBAI YACGTR 1 cut(s) 1525
BstC8I GCNNGC 4 cut(s) 883, 904, 1127, 1718
BstDEI CTNAG 6 cut(s) 231, 1068, 1121, 1449, 1563, 1725
BstF5I GGATG 8 cut(s) 31, 169, 391, 414, 1389, 1459, 1621, 1702
BstH2I RGCGCY 1 cut(s) 1609
BstHHI GCGC 2 cut(s) 171, 1608
BstMAI GTCTC 2 cut(s) 144, 974
BstMWI GCNNNNNNNGC 2 cut(s) 574, 1756
BstNI CCWGG 1 cut(s) 953
BstNSI RCATGY 1 cut(s) 1087
BstSCI CCNGG 1 cut(s) 951
BstSFI CTRYAG 2 cut(s) 672, 1164
BstSLI GKGCMC 1 cut(s) 1440
BstV1I GCAGC 2 cut(s) 724, 1051
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 4 cut(s) 374, 472, 1225, 1312
BstYI RGATCY 4 cut(s) 374, 472, 1225, 1312
Bsu36I CCTNAGG 1 cut(s) 1449
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 3 cut(s) 41, 117, 1422
BtsCI GGATG 8 cut(s) 31, 169, 391, 414, 1389, 1459, 1621, 1702
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 5 cut(s) 107, 400, 1041, 1560, 1717
Cac8I GCNNGC 4 cut(s) 883, 904, 1127, 1718
CaiI CAGNNNCTG 1 cut(s) 1750
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 2 cut(s) 171, 1608
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 5 cut(s) 40, 115, 665, 948, 1154
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 1255
CviAII CATG 9 cut(s) 194, 319, 569, 1015, 1084, 1108, 1268, 1424, 1586
CviQI GTAC 1 cut(s) 1255
DdeI CTNAG 6 cut(s) 231, 1068, 1121, 1449, 1563, 1725
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 1420
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco130I CCWWGG 2 cut(s) 839, 1470
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 3 cut(s) 665, 948, 1154
Eco47III AGCGCT 1 cut(s) 1607
Eco57I CTGAAG 2 cut(s) 516, 1772
Eco72I CACGTG 1 cut(s) 1525
Eco81I CCTNAGG 1 cut(s) 1449
EcoO109I RGGNCCY 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 951
EcoT14I CCWWGG 2 cut(s) 839, 1470
EcoT22I ATGCAT 1 cut(s) 1429
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 839, 1470
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 9 cut(s) 197, 322, 572, 1018, 1087, 1111, 1271, 1427, 1589
FalI AAGNNNNNCTT 2 cut(s) 1497, 1529
FaqI GGGAC 2 cut(s) 30, 934
FatI CATG 9 cut(s) 193, 318, 568, 1014, 1083, 1107, 1267, 1423, 1585
FauI CCCGC 1 cut(s) 462
FbaI TGATCA 1 cut(s) 1264
Fnu4HI GCNGC 4 cut(s) 39, 208, 713, 1065
FokI GGATG 8 cut(s) 18, 176, 398, 421, 1376, 1466, 1628, 1709
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 4 cut(s) 39, 208, 713, 1065
FspBI CTAG 2 cut(s) 68, 882
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 2 cut(s) 170, 1607
GluI GCNGC 4 cut(s) 39, 208, 713, 1065
GsaI CCCAGC 2 cut(s) 744, 1444
HaeII RGCGCY 1 cut(s) 1609
HaeIII GGCC 3 cut(s) 41, 117, 1422
HapII CCGG 3 cut(s) 35, 90, 118
HgaI GACGC 1 cut(s) 123
HhaI GCGC 2 cut(s) 171, 1608
Hin1II CATG 9 cut(s) 197, 322, 572, 1018, 1087, 1111, 1271, 1427, 1589
Hin6I GCGC 2 cut(s) 169, 1606
HinP1I GCGC 2 cut(s) 169, 1606
HindIII AAGCTT 1 cut(s) 1127
HinfI GANTC 7 cut(s) 83, 347, 421, 547, 682, 860, 965
HpaII CCGG 3 cut(s) 35, 90, 118
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 4 cut(s) 87, 398, 1257, 1658
Hpy188I TCNGA 7 cut(s) 65, 144, 234, 288, 379, 449, 733
Hpy8I GTNNAC 4 cut(s) 87, 398, 1257, 1658
Hpy99I CGWCG 3 cut(s) 65, 139, 890
HpyAV CCTTC 7 cut(s) 191, 712, 913, 1003, 1015, 1192, 1687
HpyCH4III ACNGT 5 cut(s) 395, 871, 890, 1181, 1495
HpyCH4IV ACGT 1 cut(s) 1524
HpyCH4V TGCA 8 cut(s) 442, 568, 977, 1190, 1245, 1371, 1427, 1600
HpyF10VI GCNNNNNNNGC 2 cut(s) 574, 1756
HpyF3I CTNAG 6 cut(s) 231, 1068, 1121, 1449, 1563, 1725
HpySE526I ACGT 1 cut(s) 1524
Hsp92II CATG 9 cut(s) 197, 322, 572, 1018, 1087, 1111, 1271, 1427, 1589
HspAI GCGC 2 cut(s) 169, 1606
Ksp22I TGATCA 1 cut(s) 1264
LmnI GCTCC 5 cut(s) 33, 582, 1510, 1572, 1603
Lsp1109I GCAGC 2 cut(s) 724, 1051
LweI GCATC 3 cut(s) 1254, 1456, 1737
MaeI CTAG 2 cut(s) 68, 882
MaeII ACGT 1 cut(s) 1524
MaeIII GTNAC 4 cut(s) 50, 505, 1489, 1699
MflI RGATCY 4 cut(s) 374, 472, 1225, 1312
MhlI GDGCHC 2 cut(s) 279, 1440
MlsI TGGCCA 1 cut(s) 1422
MluNI TGGCCA 1 cut(s) 1422
MlyI GAGTC 4 cut(s) 92, 430, 691, 974
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 7 cut(s) 10, 247, 458, 678, 1348, 1543, 1662
Mox20I TGGCCA 1 cut(s) 1422
Mph1103I ATGCAT 1 cut(s) 1429
MscI TGGCCA 1 cut(s) 1422
MseI TTAA 3 cut(s) 695, 996, 1131
Msp20I TGGCCA 1 cut(s) 1422
MspA1I CMGCKG 2 cut(s) 715, 1653
MspCI CTTAAG 1 cut(s) 1130
MspI CCGG 3 cut(s) 35, 90, 118
MspR9I CCNGG 1 cut(s) 953
MvaI CCWGG 1 cut(s) 953
MwoI GCNNNNNNNGC 2 cut(s) 574, 1756
NheI GCTAGC 1 cut(s) 881
NlaIII CATG 9 cut(s) 197, 322, 572, 1018, 1087, 1111, 1271, 1427, 1589
NlaIV GGNNCC 5 cut(s) 116, 474, 578, 950, 1326
NmuCI GTSAC 2 cut(s) 50, 505
NsbI TGCGCA 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 1429
NspI RCATGY 1 cut(s) 1087
PagI TCATGA 1 cut(s) 1267
PasI CCCWGGG 1 cut(s) 952
PfeI GAWTC 3 cut(s) 347, 547, 860
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 40, 209, 714, 1066
PleI GAGTC 4 cut(s) 91, 429, 690, 973
PmaCI CACGTG 1 cut(s) 1525
PmlI CACGTG 1 cut(s) 1525
PpsI GAGTC 4 cut(s) 91, 429, 690, 973
Ppu21I YACGTR 1 cut(s) 1525
PpuMI RGGWCCY 1 cut(s) 665
Psp5II RGGWCCY 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 951
PspCI CACGTG 1 cut(s) 1525
PspFI CCCAGC 2 cut(s) 740, 1440
PspGI CCWGG 1 cut(s) 951
PspN4I GGNNCC 5 cut(s) 116, 474, 578, 950, 1326
PspPI GGNCC 5 cut(s) 40, 115, 665, 948, 1154
PspPPI RGGWCCY 1 cut(s) 665
PstNI CAGNNNCTG 1 cut(s) 1750
PsuI RGATCY 4 cut(s) 374, 472, 1225, 1312
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 1 cut(s) 1256
RsaNI GTAC 1 cut(s) 1255
SaqAI TTAA 3 cut(s) 695, 996, 1131
SatI GCNGC 4 cut(s) 39, 208, 713, 1065
Sau96I GGNCC 5 cut(s) 40, 115, 665, 948, 1154
SchI GAGTC 4 cut(s) 92, 430, 691, 974
ScrFI CCNGG 1 cut(s) 953
SduI GDGCHC 2 cut(s) 279, 1440
SfaNI GCATC 3 cut(s) 1254, 1456, 1737
SfcI CTRYAG 2 cut(s) 672, 1164
SinI GGWCC 3 cut(s) 665, 948, 1154
SmlI CTYRAG 4 cut(s) 524, 779, 1130, 1308
SmoI CTYRAG 4 cut(s) 524, 779, 1130, 1308
SpeI ACTAGT 1 cut(s) 67
SsiI CCGC 5 cut(s) 38, 207, 469, 715, 1653
SspI AATATT 1 cut(s) 811
SspMI CTAG 2 cut(s) 68, 882
StyD4I CCNGG 1 cut(s) 951
StyI CCWWGG 2 cut(s) 839, 1470
TaaI ACNGT 5 cut(s) 395, 871, 890, 1181, 1495
TaiI ACGT 1 cut(s) 1527
TaqI TCGA 3 cut(s) 600, 1248, 1462
TatI WGTACW 1 cut(s) 1254
TauI GCSGC 2 cut(s) 41, 210
TfiI GAWTC 3 cut(s) 347, 547, 860
Tru1I TTAA 3 cut(s) 695, 996, 1131
Tru9I TTAA 3 cut(s) 695, 996, 1131
TscAI CASTG 5 cut(s) 107, 400, 1048, 1567, 1717
TseFI GTSAC 2 cut(s) 50, 505
TseI GCWGC 2 cut(s) 712, 1064
Tsp45I GTSAC 2 cut(s) 50, 505
TspGWI ACGGA 2 cut(s) 138, 465
TspRI CASTG 5 cut(s) 107, 400, 1048, 1567, 1717
Tth111I GACNNNGTC 1 cut(s) 56
Vha464I CTTAAG 1 cut(s) 1130
VpaK11BI GGWCC 3 cut(s) 665, 948, 1154
XapI RAATTY 5 cut(s) 259, 269, 689, 817, 923
XceI RCATGY 1 cut(s) 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XspI CTAG 2 cut(s) 68, 882
Zsp2I ATGCAT 1 cut(s) 1429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.