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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61780 AT5G28320 AT5G28400 |
| fragaria_vesca | FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16531 FvH4_7g16560 |
| malus_domestica | MD01G1081300.v1.1 MD07G1150200.v1.1 MD07G1150300.v1.1 |
| prunus_persica | Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 |
| pyrus_communis | pycom01g10920 pycom07g14870 |
| rosa_chinensis | RchiOBHm_Chr1g0359591 |
| rosa_laevigata | RLG00000027859 |
| rosa_multiflora | Rmu_sc0002556.1_g000023 Rmu_sc0013097.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00296900 |
| rosa_rugosa | Rorug01G0272300 Rorug03G0106700 |
| rosa_samantha | Rh1AG285500 Rh1BG251900 Rh1CG269300 Rh1DG280800 |
| rosa_wichuraiana | Rw1G025400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1786 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1093, 1147 |
| Acc36I | ACCTGC | 1 cut(s) | 1786 |
| AccB1I | GGYRCC | 1 cut(s) | 1890 |
| AccI | GTMKAC | 1 cut(s) | 199 |
| AciI | CCGC | 6 cut(s) | 211, 1089, 1923, 2185, 2431, 3369 |
| AclWI | GGATC | 7 cut(s) | 652, 2098, 2183, 2196, 2754, 2762, 3252 |
| AcoI | YGGCCR | 2 cut(s) | 1191, 3136 |
| AcuI | CTGAAG | 4 cut(s) | 435, 1869, 2232, 3488 |
| AcvI | CACGTG | 2 cut(s) | 1205, 3241 |
| AcyI | GRCGYC | 1 cut(s) | 1891 |
| AfaI | GTAC | 4 cut(s) | 518, 1441, 2071, 2972 |
| AfeI | AGCGCT | 1 cut(s) | 3323 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 997, 1664, 1717, 3444 |
| AflII | CTTAAG | 1 cut(s) | 2846 |
| AjnI | CCWGG | 5 cut(s) | 68, 990, 1193, 1710, 2667 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1496, 1528 |
| AleI | CACNNNNGTG | 1 cut(s) | 1082 |
| Alw21I | GWGCWC | 1 cut(s) | 104 |
| Alw26I | GTCTC | 3 cut(s) | 47, 1860, 2690 |
| AlwI | GGATC | 7 cut(s) | 652, 2098, 2183, 2196, 2754, 2762, 3252 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3466 |
| Aor51HI | AGCGCT | 1 cut(s) | 3323 |
| AoxI | GGCC | 3 cut(s) | 1191, 1548, 3136 |
| ApeKI | GCWGC | 3 cut(s) | 987, 2428, 2780 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2648, 2680 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1005, 1659 |
| AspLEI | GCGC | 2 cut(s) | 1893, 3324 |
| AspS9I | GGNCC | 3 cut(s) | 2381, 2664, 2870 |
| AsuHPI | GGTGA | 9 cut(s) | 265, 403, 413, 467, 667, 770, 1333, 1475, 1889 |
| AsuNHI | GCTAGC | 1 cut(s) | 2597 |
| AvaII | GGWCC | 3 cut(s) | 2381, 2664, 2870 |
| AxyI | CCTNAGG | 1 cut(s) | 3165 |
| BaeGI | GKGCMC | 1 cut(s) | 3156 |
| BalI | TGGCCA | 2 cut(s) | 1193, 3138 |
| BamHI | GGATCC | 1 cut(s) | 2188 |
| BanI | GGYRCC | 1 cut(s) | 1890 |
| BanII | GRGCYC | 1 cut(s) | 1995 |
| BauI | CACGAG | 1 cut(s) | 205 |
| BbrPI | CACGTG | 2 cut(s) | 1205, 3241 |
| BbsI | GAAGAC | 2 cut(s) | 249, 785 |
| Bbv12I | GWGCWC | 1 cut(s) | 104 |
| BbvCI | CCTCAGC | 1 cut(s) | 224 |
| BbvI | GCAGC | 3 cut(s) | 999, 2440, 2767 |
| BccI | CCATC | 9 cut(s) | 142, 560, 691, 838, 1751, 2197, 2324, 2851, 3013 |
| BceAI | ACGGC | 1 cut(s) | 3034 |
| BciT130I | CCWGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| BciVI | GTATCC | 1 cut(s) | 2200 |
| BcoDI | GTCTC | 3 cut(s) | 47, 1860, 2690 |
| BfaI | CTAG | 8 cut(s) | 690, 828, 1437, 1508, 1605, 1664, 1754, 2598 |
| BfmI | CTRYAG | 3 cut(s) | 1386, 2388, 2880 |
| BfoI | RGCGCY | 2 cut(s) | 1894, 3325 |
| BfrI | CTTAAG | 1 cut(s) | 2846 |
| BfuAI | ACCTGC | 1 cut(s) | 1786 |
| BfuI | GTATCC | 1 cut(s) | 2200 |
| BglII | AGATCT | 2 cut(s) | 2941, 3028 |
| BisI | GCNGC | 5 cut(s) | 211, 988, 1924, 2429, 2781 |
| BlsI | GCNGC | 5 cut(s) | 212, 989, 1925, 2430, 2782 |
| BmcAI | AGTACT | 2 cut(s) | 518, 1441 |
| Bme1390I | CCNGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| Bme18I | GGWCC | 3 cut(s) | 2381, 2664, 2870 |
| BmgT120I | GGNCC | 3 cut(s) | 2381, 2664, 2870 |
| BmiI | GGNNCC | 6 cut(s) | 92, 1892, 2190, 2294, 2666, 3042 |
| BmrFI | CCNGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| BmrI | ACTGGG | 3 cut(s) | 117, 529, 2186 |
| BmsI | GCATC | 6 cut(s) | 1513, 1663, 1910, 2970, 3172, 3453 |
| BmtI | GCTAGC | 1 cut(s) | 2601 |
| BmuI | ACTGGG | 3 cut(s) | 117, 529, 2186 |
| BpiI | GAAGAC | 2 cut(s) | 249, 785 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3308, 3340 |
| Bpu10I | CCTNAGC | 1 cut(s) | 224 |
| BpuEI | CTTGAG | 4 cut(s) | 628, 2261, 2516, 3009 |
| BsaAI | YACGTR | 3 cut(s) | 1205, 1743, 3241 |
| BsaBI | GATNNNNATC | 2 cut(s) | 294, 2745 |
| BsaHI | GRCGYC | 1 cut(s) | 1891 |
| BsaJI | CCNNGG | 7 cut(s) | 722, 1230, 1577, 2555, 2667, 2668, 3186 |
| BsaWI | WCCGGW | 1 cut(s) | 805 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 347, 377 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 997, 1664, 1717, 3444 |
| Bse1I | ACTGG | 8 cut(s) | 123, 524, 1035, 1143, 2121, 2181, 3042, 3424 |
| Bse21I | CCTNAGG | 1 cut(s) | 3165 |
| Bse8I | GATNNNNATC | 2 cut(s) | 294, 2745 |
| BseBI | CCWGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| BseDI | CCNNGG | 7 cut(s) | 722, 1230, 1577, 2555, 2667, 2668, 3186 |
| BseGI | GGATG | 9 cut(s) | 604, 702, 1423, 2107, 2130, 3105, 3175, 3337, 3418 |
| BseJI | GATNNNNATC | 2 cut(s) | 294, 2745 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 997, 1664, 1717, 3444 |
| BseMII | CTCAG | 6 cut(s) | 215, 315, 1271, 1961, 2775, 3270 |
| BseNI | ACTGG | 8 cut(s) | 123, 524, 1035, 1143, 2121, 2181, 3042, 3424 |
| BseRI | GAGGAG | 4 cut(s) | 625, 776, 955, 3332 |
| BseSI | GKGCMC | 1 cut(s) | 3156 |
| BseXI | GCAGC | 3 cut(s) | 999, 2440, 2767 |
| BseYI | CCCAGC | 2 cut(s) | 2456, 3156 |
| BsgI | GTGCAG | 1 cut(s) | 1193 |
| BshFI | GGCC | 3 cut(s) | 1193, 1550, 3138 |
| BshNI | GGYRCC | 1 cut(s) | 1890 |
| BsiHKAI | GWGCWC | 1 cut(s) | 104 |
| BsiSI | CCGG | 2 cut(s) | 650, 806 |
| BslFI | GGGAC | 1 cut(s) | 2650 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 997, 1664, 1717, 3444 |
| BsmAI | GTCTC | 3 cut(s) | 47, 1860, 2690 |
| BsmFI | GGGAC | 1 cut(s) | 2650 |
| BsmI | GAATGC | 1 cut(s) | 1736 |
| BsnI | GGCC | 3 cut(s) | 1193, 1550, 3138 |
| Bsp1286I | GDGCHC | 3 cut(s) | 104, 1995, 3156 |
| Bsp1407I | TGTACA | 1 cut(s) | 2970 |
| BspACI | CCGC | 6 cut(s) | 211, 1089, 1923, 2185, 2431, 3369 |
| BspANI | GGCC | 3 cut(s) | 1193, 1550, 3138 |
| BspCNI | CTCAG | 6 cut(s) | 216, 316, 1270, 1960, 2776, 3271 |
| BspLI | GGNNCC | 6 cut(s) | 92, 1892, 2190, 2294, 2666, 3042 |
| BspMAI | CTGCAG | 1 cut(s) | 1390 |
| BspMI | ACCTGC | 1 cut(s) | 1786 |
| BspOI | GCTAGC | 1 cut(s) | 2601 |
| BspPI | GGATC | 7 cut(s) | 652, 2098, 2183, 2196, 2754, 2762, 3252 |
| BspQI | GCTCTTC | 1 cut(s) | 92 |
| BspT107I | GGYRCC | 1 cut(s) | 1890 |
| BspTI | CTTAAG | 1 cut(s) | 2846 |
| BsrGI | TGTACA | 1 cut(s) | 2970 |
| BsrI | ACTGG | 8 cut(s) | 123, 524, 1035, 1143, 2121, 2181, 3042, 3424 |
| BssECI | CCNNGG | 7 cut(s) | 722, 1230, 1577, 2555, 2667, 2668, 3186 |
| BssNI | GRCGYC | 1 cut(s) | 1891 |
| BssSI | CACGAG | 1 cut(s) | 205 |
| BssT1I | CCWWGG | 4 cut(s) | 1230, 1577, 2555, 3186 |
| Bst2BI | CACGAG | 1 cut(s) | 205 |
| Bst2UI | CCWGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| Bst4CI | ACNGT | 7 cut(s) | 41, 498, 2111, 2587, 2606, 2897, 3211 |
| Bst6I | CTCTTC | 4 cut(s) | 92, 900, 1494, 2390 |
| BstACI | GRCGYC | 1 cut(s) | 1891 |
| BstAFI | CTTAAG | 1 cut(s) | 2846 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1523 |
| BstAUI | TGTACA | 1 cut(s) | 2970 |
| BstBAI | YACGTR | 3 cut(s) | 1205, 1743, 3241 |
| BstC8I | GCNNGC | 6 cut(s) | 675, 1113, 2599, 2620, 2843, 3434 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| BstF5I | GGATG | 9 cut(s) | 604, 702, 1423, 2107, 2130, 3105, 3175, 3337, 3418 |
| BstH2I | RGCGCY | 2 cut(s) | 1894, 3325 |
| BstHHI | GCGC | 2 cut(s) | 1893, 3324 |
| BstMAI | GTCTC | 3 cut(s) | 47, 1860, 2690 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 869, 1199, 1523, 1733, 1787, 2290, 3472 |
| BstNI | CCWGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| BstNSI | RCATGY | 1 cut(s) | 2803 |
| BstSCI | CCNGG | 5 cut(s) | 68, 990, 1193, 1710, 2667 |
| BstSFI | CTRYAG | 3 cut(s) | 1386, 2388, 2880 |
| BstSLI | GKGCMC | 1 cut(s) | 3156 |
| BstV1I | GCAGC | 3 cut(s) | 999, 2440, 2767 |
| BstV2I | GAAGAC | 2 cut(s) | 249, 785 |
| BstX2I | RGATCY | 4 cut(s) | 2090, 2188, 2941, 3028 |
| BstYI | RGATCY | 4 cut(s) | 2090, 2188, 2941, 3028 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3165 |
| BsuI | GTATCC | 1 cut(s) | 2200 |
| BsuRI | GGCC | 3 cut(s) | 1193, 1550, 3138 |
| BtsCI | GGATG | 9 cut(s) | 604, 702, 1423, 2107, 2130, 3105, 3175, 3337, 3418 |
| BtsI | GCAGTG | 1 cut(s) | 1383 |
| BtsIMutI | CAGTG | 7 cut(s) | 1028, 1383, 1599, 2116, 2757, 3276, 3433 |
| BveI | ACCTGC | 1 cut(s) | 1786 |
| Cac8I | GCNNGC | 6 cut(s) | 675, 1113, 2599, 2620, 2843, 3434 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3466 |
| CfoI | GCGC | 2 cut(s) | 1893, 3324 |
| Cfr13I | GGNCC | 3 cut(s) | 2381, 2664, 2870 |
| CseI | GACGC | 1 cut(s) | 1779 |
| CsiI | ACCWGGT | 2 cut(s) | 68, 1710 |
| Csp6I | GTAC | 4 cut(s) | 517, 1440, 2070, 2971 |
| CviQI | GTAC | 4 cut(s) | 517, 1440, 2070, 2971 |
| DinI | GGCGCC | 1 cut(s) | 1892 |
| DraI | TTTAAA | 1 cut(s) | 276 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1093, 1147 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1093, 1147 |
| EaeI | YGGCCR | 2 cut(s) | 1191, 3136 |
| Eam1104I | CTCTTC | 4 cut(s) | 92, 900, 1494, 2390 |
| EarI | CTCTTC | 4 cut(s) | 92, 900, 1494, 2390 |
| Eco130I | CCWWGG | 4 cut(s) | 1230, 1577, 2555, 3186 |
| Eco24I | GRGCYC | 1 cut(s) | 1995 |
| Eco47I | GGWCC | 3 cut(s) | 2381, 2664, 2870 |
| Eco47III | AGCGCT | 1 cut(s) | 3323 |
| Eco57I | CTGAAG | 4 cut(s) | 435, 1869, 2232, 3488 |
| Eco72I | CACGTG | 2 cut(s) | 1205, 3241 |
| Eco81I | CCTNAGG | 1 cut(s) | 3165 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2381 |
| EcoRI | GAATTC | 3 cut(s) | 262, 425, 2405 |
| EcoRII | CCWGG | 5 cut(s) | 68, 990, 1193, 1710, 2667 |
| EcoT14I | CCWWGG | 4 cut(s) | 1230, 1577, 2555, 3186 |
| EcoT22I | ATGCAT | 2 cut(s) | 1738, 3145 |
| EcoT38I | GRGCYC | 1 cut(s) | 1995 |
| EgeI | GGCGCC | 1 cut(s) | 1892 |
| EheI | GGCGCC | 1 cut(s) | 1892 |
| ErhI | CCWWGG | 4 cut(s) | 1230, 1577, 2555, 3186 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3213, 3245 |
| FaqI | GGGAC | 1 cut(s) | 2650 |
| FauI | CCCGC | 1 cut(s) | 2178 |
| FblI | GTMKAC | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 5 cut(s) | 211, 988, 1924, 2429, 2781 |
| FokI | GGATG | 9 cut(s) | 611, 709, 1430, 2114, 2137, 3092, 3182, 3344, 3425 |
| FriOI | GRGCYC | 1 cut(s) | 1995 |
| Fsp4HI | GCNGC | 5 cut(s) | 211, 988, 1924, 2429, 2781 |
| FspBI | CTAG | 8 cut(s) | 690, 828, 1437, 1508, 1605, 1664, 1754, 2598 |
| GlaI | GCGC | 2 cut(s) | 1892, 3323 |
| GluI | GCNGC | 5 cut(s) | 211, 988, 1924, 2429, 2781 |
| GsaI | CCCAGC | 2 cut(s) | 2460, 3160 |
| HaeII | RGCGCY | 2 cut(s) | 1894, 3325 |
| HaeIII | GGCC | 3 cut(s) | 1193, 1550, 3138 |
| HapII | CCGG | 2 cut(s) | 650, 806 |
| HgaI | GACGC | 1 cut(s) | 1779 |
| HhaI | GCGC | 2 cut(s) | 1893, 3324 |
| Hin1I | GRCGYC | 1 cut(s) | 1891 |
| Hin6I | GCGC | 2 cut(s) | 1891, 3322 |
| HinP1I | GCGC | 2 cut(s) | 1891, 3322 |
| HincII | GTYRAC | 1 cut(s) | 200 |
| HindII | GTYRAC | 1 cut(s) | 200 |
| HindIII | AAGCTT | 2 cut(s) | 180, 2843 |
| HpaII | CCGG | 2 cut(s) | 650, 806 |
| HphI | GGTGA | 9 cut(s) | 265, 403, 413, 467, 667, 770, 1333, 1475, 1889 |
| Hpy166II | GTNNAC | 6 cut(s) | 200, 256, 658, 2114, 2973, 3374 |
| Hpy8I | GTNNAC | 6 cut(s) | 200, 256, 658, 2114, 2973, 3374 |
| Hpy99I | CGWCG | 1 cut(s) | 2606 |
| HpyCH4III | ACNGT | 7 cut(s) | 41, 498, 2111, 2587, 2606, 2897, 3211 |
| HpyCH4IV | ACGT | 4 cut(s) | 1204, 1627, 1742, 3240 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 869, 1199, 1523, 1733, 1787, 2290, 3472 |
| HpySE526I | ACGT | 4 cut(s) | 1204, 1627, 1742, 3240 |
| Hsp92I | GRCGYC | 1 cut(s) | 1891 |
| HspAI | GCGC | 2 cut(s) | 1891, 3322 |
| KasI | GGCGCC | 1 cut(s) | 1890 |
| LguI | GCTCTTC | 1 cut(s) | 92 |
| LmnI | GCTCC | 5 cut(s) | 4, 2298, 3226, 3288, 3319 |
| Lsp1109I | GCAGC | 3 cut(s) | 999, 2440, 2767 |
| LweI | GCATC | 6 cut(s) | 1513, 1663, 1910, 2970, 3172, 3453 |
| MabI | ACCWGGT | 2 cut(s) | 68, 1710 |
| MaeI | CTAG | 8 cut(s) | 690, 828, 1437, 1508, 1605, 1664, 1754, 2598 |
| MaeII | ACGT | 4 cut(s) | 1204, 1627, 1742, 3240 |
| MaeIII | GTNAC | 5 cut(s) | 1084, 1628, 2221, 3205, 3415 |
| MfeI | CAATTG | 1 cut(s) | 1836 |
| MflI | RGATCY | 4 cut(s) | 2090, 2188, 2941, 3028 |
| MhlI | GDGCHC | 3 cut(s) | 104, 1995, 3156 |
| MlsI | TGGCCA | 2 cut(s) | 1193, 3138 |
| MluNI | TGGCCA | 2 cut(s) | 1193, 3138 |
| Mly113I | GGCGCC | 1 cut(s) | 1891 |
| MlyI | GAGTC | 6 cut(s) | 443, 773, 1400, 2146, 2407, 2690 |
| MmeI | TCCRAC | 3 cut(s) | 467, 826, 1383 |
| Mox20I | TGGCCA | 2 cut(s) | 1193, 3138 |
| Mph1103I | ATGCAT | 2 cut(s) | 1738, 3145 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1005, 1659 |
| MscI | TGGCCA | 2 cut(s) | 1193, 3138 |
| MseI | TTAA | 8 cut(s) | 50, 275, 591, 1100, 1167, 2411, 2712, 2847 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1082 |
| Msp20I | TGGCCA | 2 cut(s) | 1193, 3138 |
| MspA1I | CMGCKG | 2 cut(s) | 2431, 3369 |
| MspCI | CTTAAG | 1 cut(s) | 2846 |
| MspI | CCGG | 2 cut(s) | 650, 806 |
| MspR9I | CCNGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| MunI | CAATTG | 1 cut(s) | 1836 |
| Mva1269I | GAATGC | 1 cut(s) | 1736 |
| MvaI | CCWGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 869, 1199, 1523, 1733, 1787, 2290, 3472 |
| NarI | GGCGCC | 1 cut(s) | 1891 |
| NheI | GCTAGC | 1 cut(s) | 2597 |
| NlaIV | GGNNCC | 6 cut(s) | 92, 1892, 2190, 2294, 2666, 3042 |
| NmuCI | GTSAC | 3 cut(s) | 1084, 1628, 2221 |
| NsiI | ATGCAT | 2 cut(s) | 1738, 3145 |
| NspI | RCATGY | 1 cut(s) | 2803 |
| OliI | CACNNNNGTG | 1 cut(s) | 1082 |
| PaqCI | CACCTGC | 1 cut(s) | 1786 |
| PasI | CCCWGGG | 1 cut(s) | 2668 |
| PciSI | GCTCTTC | 1 cut(s) | 92 |
| PctI | GAATGC | 1 cut(s) | 1736 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1005, 1659 |
| PkrI | GCNGC | 5 cut(s) | 212, 989, 1925, 2430, 2782 |
| PleI | GAGTC | 6 cut(s) | 442, 772, 1400, 2145, 2406, 2689 |
| PluTI | GGCGCC | 1 cut(s) | 1894 |
| PmaCI | CACGTG | 2 cut(s) | 1205, 3241 |
| PmlI | CACGTG | 2 cut(s) | 1205, 3241 |
| PpsI | GAGTC | 6 cut(s) | 442, 772, 1400, 2145, 2406, 2689 |
| Ppu21I | YACGTR | 3 cut(s) | 1205, 1743, 3241 |
| PpuMI | RGGWCCY | 1 cut(s) | 2381 |
| Psp5II | RGGWCCY | 1 cut(s) | 2381 |
| Psp6I | CCWGG | 5 cut(s) | 68, 990, 1193, 1710, 2667 |
| PspCI | CACGTG | 2 cut(s) | 1205, 3241 |
| PspFI | CCCAGC | 2 cut(s) | 2456, 3156 |
| PspGI | CCWGG | 5 cut(s) | 68, 990, 1193, 1710, 2667 |
| PspN4I | GGNNCC | 6 cut(s) | 92, 1892, 2190, 2294, 2666, 3042 |
| PspPI | GGNCC | 3 cut(s) | 2381, 2664, 2870 |
| PspPPI | RGGWCCY | 1 cut(s) | 2381 |
| PstI | CTGCAG | 1 cut(s) | 1390 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3466 |
| PsuI | RGATCY | 4 cut(s) | 2090, 2188, 2941, 3028 |
| RsaI | GTAC | 4 cut(s) | 518, 1441, 2071, 2972 |
| RsaNI | GTAC | 4 cut(s) | 517, 1440, 2070, 2971 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1082 |
| SalI | GTCGAC | 1 cut(s) | 198 |
| SapI | GCTCTTC | 1 cut(s) | 92 |
| SaqAI | TTAA | 8 cut(s) | 50, 275, 591, 1100, 1167, 2411, 2712, 2847 |
| SatI | GCNGC | 5 cut(s) | 211, 988, 1924, 2429, 2781 |
| Sau96I | GGNCC | 3 cut(s) | 2381, 2664, 2870 |
| ScaI | AGTACT | 2 cut(s) | 518, 1441 |
| SchI | GAGTC | 6 cut(s) | 443, 773, 1400, 2146, 2407, 2690 |
| ScrFI | CCNGG | 5 cut(s) | 70, 992, 1195, 1712, 2669 |
| SduI | GDGCHC | 3 cut(s) | 104, 1995, 3156 |
| SexAI | ACCWGGT | 2 cut(s) | 68, 1710 |
| SfaNI | GCATC | 6 cut(s) | 1513, 1663, 1910, 2970, 3172, 3453 |
| SfcI | CTRYAG | 3 cut(s) | 1386, 2388, 2880 |
| SfoI | GGCGCC | 1 cut(s) | 1892 |
| SinI | GGWCC | 3 cut(s) | 2381, 2664, 2870 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1082 |
| SmlI | CTYRAG | 5 cut(s) | 607, 2240, 2495, 2846, 3024 |
| SmoI | CTYRAG | 5 cut(s) | 607, 2240, 2495, 2846, 3024 |
| SsiI | CCGC | 6 cut(s) | 211, 1089, 1923, 2185, 2431, 3369 |
| SspDI | GGCGCC | 1 cut(s) | 1890 |
| SspI | AATATT | 1 cut(s) | 2527 |
| SspMI | CTAG | 8 cut(s) | 690, 828, 1437, 1508, 1605, 1664, 1754, 2598 |
| StyD4I | CCNGG | 5 cut(s) | 68, 990, 1193, 1710, 2667 |
| StyI | CCWWGG | 4 cut(s) | 1230, 1577, 2555, 3186 |
| TaaI | ACNGT | 7 cut(s) | 41, 498, 2111, 2587, 2606, 2897, 3211 |
| TaiI | ACGT | 4 cut(s) | 1207, 1630, 1745, 3243 |
| TaqI | TCGA | 6 cut(s) | 199, 442, 2276, 2316, 2964, 3178 |
| TatI | WGTACW | 3 cut(s) | 516, 1439, 2970 |
| TauI | GCSGC | 2 cut(s) | 213, 1926 |
| Tru1I | TTAA | 8 cut(s) | 50, 275, 591, 1100, 1167, 2411, 2712, 2847 |
| Tru9I | TTAA | 8 cut(s) | 50, 275, 591, 1100, 1167, 2411, 2712, 2847 |
| TscAI | CASTG | 7 cut(s) | 1035, 1390, 1599, 2116, 2764, 3283, 3433 |
| TseFI | GTSAC | 3 cut(s) | 1084, 1628, 2221 |
| TseI | GCWGC | 3 cut(s) | 987, 2428, 2780 |
| Tsp45I | GTSAC | 3 cut(s) | 1084, 1628, 2221 |
| TspGWI | ACGGA | 2 cut(s) | 932, 1362 |
| TspRI | CASTG | 7 cut(s) | 1035, 1390, 1599, 2116, 2764, 3283, 3433 |
| Vha464I | CTTAAG | 1 cut(s) | 2846 |
| VpaK11BI | GGWCC | 3 cut(s) | 2381, 2664, 2870 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| XbaI | TCTAGA | 3 cut(s) | 827, 1507, 1753 |
| XceI | RCATGY | 1 cut(s) | 2803 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1916 |
| XmiI | GTMKAC | 1 cut(s) | 199 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1005, 1659 |
| XspI | CTAG | 8 cut(s) | 690, 828, 1437, 1508, 1605, 1664, 1754, 2598 |
| ZrmI | AGTACT | 2 cut(s) | 518, 1441 |
| Zsp2I | ATGCAT | 2 cut(s) | 1738, 3145 |