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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61780 AT5G28320 AT5G28400 |
| fragaria_vesca | FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16531 FvH4_7g16560 |
| malus_domestica | MD01G1081300.v1.1 MD07G1150200.v1.1 MD07G1150300.v1.1 |
| prunus_persica | Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 |
| pyrus_communis | pycom01g10920 pycom07g14870 |
| rosa_chinensis | RchiOBHm_Chr1g0359591 |
| rosa_laevigata | RLG00000027859 |
| rosa_multiflora | Rmu_sc0002556.1_g000023 Rmu_sc0013097.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00296900 |
| rosa_rugosa | Rorug01G0272300 Rorug03G0106700 |
| rosa_samantha | Rh1AG285500 Rh1BG251900 Rh1CG269300 Rh1DG280800 |
| rosa_wichuraiana | Rw1G025400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1798 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1159 |
| Acc36I | ACCTGC | 1 cut(s) | 1798 |
| AccI | GTMKAC | 1 cut(s) | 199 |
| AciI | CCGC | 5 cut(s) | 211, 643, 1935, 2197, 2443 |
| AclWI | GGATC | 6 cut(s) | 664, 2110, 2195, 2208, 2766, 2774 |
| AcoI | YGGCCR | 1 cut(s) | 1203 |
| AcuI | CTGAAG | 3 cut(s) | 447, 1881, 2244 |
| AcvI | CACGTG | 1 cut(s) | 1217 |
| AcyI | GRCGYC | 1 cut(s) | 1903 |
| AfaI | GTAC | 3 cut(s) | 530, 1453, 2083 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1009, 1676, 1729 |
| AflII | CTTAAG | 1 cut(s) | 2858 |
| AjnI | CCWGG | 5 cut(s) | 68, 1002, 1205, 1722, 2679 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1508, 1540 |
| AleI | CACNNNNGTG | 1 cut(s) | 1094 |
| Alw21I | GWGCWC | 2 cut(s) | 104, 3003 |
| Alw26I | GTCTC | 3 cut(s) | 47, 1872, 2702 |
| AlwI | GGATC | 6 cut(s) | 664, 2110, 2195, 2208, 2766, 2774 |
| AoxI | GGCC | 2 cut(s) | 1203, 1560 |
| ApeKI | GCWGC | 3 cut(s) | 999, 2440, 2792 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2660, 2692 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 594, 1017, 1671 |
| AspLEI | GCGC | 1 cut(s) | 1103 |
| AspS9I | GGNCC | 3 cut(s) | 2393, 2676, 2882 |
| AsuHPI | GGTGA | 8 cut(s) | 58, 265, 403, 413, 479, 679, 782, 1901 |
| AsuNHI | GCTAGC | 1 cut(s) | 2609 |
| AvaII | GGWCC | 3 cut(s) | 2393, 2676, 2882 |
| BalI | TGGCCA | 1 cut(s) | 1205 |
| BamHI | GGATCC | 1 cut(s) | 2200 |
| BanII | GRGCYC | 1 cut(s) | 2007 |
| BauI | CACGAG | 1 cut(s) | 205 |
| BbrPI | CACGTG | 1 cut(s) | 1217 |
| BbsI | GAAGAC | 3 cut(s) | 249, 797, 2144 |
| Bbv12I | GWGCWC | 2 cut(s) | 104, 3003 |
| BbvCI | CCTCAGC | 1 cut(s) | 224 |
| BbvI | GCAGC | 3 cut(s) | 1011, 2452, 2779 |
| BccI | CCATC | 8 cut(s) | 142, 572, 703, 850, 1763, 2209, 2336, 2863 |
| BciT130I | CCWGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| BciVI | GTATCC | 1 cut(s) | 2212 |
| BcoDI | GTCTC | 3 cut(s) | 47, 1872, 2702 |
| BfaI | CTAG | 8 cut(s) | 702, 840, 1449, 1520, 1617, 1676, 1766, 2610 |
| BfmI | CTRYAG | 2 cut(s) | 1398, 2892 |
| BfrI | CTTAAG | 1 cut(s) | 2858 |
| BfuAI | ACCTGC | 1 cut(s) | 1798 |
| BfuI | GTATCC | 1 cut(s) | 2212 |
| BglII | AGATCT | 2 cut(s) | 615, 2953 |
| BisI | GCNGC | 5 cut(s) | 211, 1000, 1936, 2441, 2793 |
| BlsI | GCNGC | 5 cut(s) | 212, 1001, 1937, 2442, 2794 |
| BmcAI | AGTACT | 2 cut(s) | 530, 1453 |
| Bme1390I | CCNGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| Bme18I | GGWCC | 3 cut(s) | 2393, 2676, 2882 |
| BmgT120I | GGNCC | 3 cut(s) | 2393, 2676, 2882 |
| BmiI | GGNNCC | 4 cut(s) | 92, 2202, 2306, 2678 |
| BmrFI | CCNGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| BmrI | ACTGGG | 4 cut(s) | 117, 382, 541, 2198 |
| BmsI | GCATC | 2 cut(s) | 1525, 1675 |
| BmtI | GCTAGC | 1 cut(s) | 2613 |
| BmuI | ACTGGG | 4 cut(s) | 117, 382, 541, 2198 |
| BpiI | GAAGAC | 3 cut(s) | 249, 797, 2144 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1403, 1435 |
| Bpu10I | CCTNAGC | 1 cut(s) | 224 |
| BpuEI | CTTGAG | 3 cut(s) | 640, 2273, 2528 |
| BsaAI | YACGTR | 2 cut(s) | 1217, 1755 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2757 |
| BsaHI | GRCGYC | 1 cut(s) | 1903 |
| BsaJI | CCNNGG | 6 cut(s) | 734, 1242, 1589, 2567, 2679, 2680 |
| BsaWI | WCCGGW | 1 cut(s) | 817 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1009, 1676, 1729 |
| Bse1I | ACTGG | 8 cut(s) | 123, 377, 536, 1047, 1155, 2133, 2138, 2193 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2757 |
| BseBI | CCWGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| BseDI | CCNNGG | 6 cut(s) | 734, 1242, 1589, 2567, 2679, 2680 |
| BseGI | GGATG | 4 cut(s) | 616, 1435, 2119, 2142 |
| BseJI | GATNNNNATC | 1 cut(s) | 2757 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1009, 1676, 1729 |
| BseMII | CTCAG | 5 cut(s) | 215, 315, 1283, 1973, 2787 |
| BseNI | ACTGG | 8 cut(s) | 123, 377, 536, 1047, 1155, 2133, 2138, 2193 |
| BseRI | GAGGAG | 3 cut(s) | 637, 788, 967 |
| BseXI | GCAGC | 3 cut(s) | 1011, 2452, 2779 |
| BseYI | CCCAGC | 1 cut(s) | 2468 |
| BsgI | GTGCAG | 1 cut(s) | 1205 |
| BshFI | GGCC | 2 cut(s) | 1205, 1562 |
| BsiHKAI | GWGCWC | 2 cut(s) | 104, 3003 |
| BsiSI | CCGG | 2 cut(s) | 662, 818 |
| BslFI | GGGAC | 1 cut(s) | 2662 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1009, 1676, 1729 |
| BsmAI | GTCTC | 3 cut(s) | 47, 1872, 2702 |
| BsmFI | GGGAC | 1 cut(s) | 2662 |
| BsmI | GAATGC | 1 cut(s) | 1748 |
| BsnI | GGCC | 2 cut(s) | 1205, 1562 |
| Bsp1286I | GDGCHC | 3 cut(s) | 104, 2007, 3003 |
| Bsp143I | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| BspACI | CCGC | 5 cut(s) | 211, 643, 1935, 2197, 2443 |
| BspANI | GGCC | 2 cut(s) | 1205, 1562 |
| BspCNI | CTCAG | 5 cut(s) | 216, 316, 1282, 1972, 2788 |
| BspLI | GGNNCC | 4 cut(s) | 92, 2202, 2306, 2678 |
| BspMAI | CTGCAG | 1 cut(s) | 1402 |
| BspMI | ACCTGC | 1 cut(s) | 1798 |
| BspOI | GCTAGC | 1 cut(s) | 2613 |
| BspPI | GGATC | 6 cut(s) | 664, 2110, 2195, 2208, 2766, 2774 |
| BspQI | GCTCTTC | 1 cut(s) | 92 |
| BspTI | CTTAAG | 1 cut(s) | 2858 |
| BsrI | ACTGG | 8 cut(s) | 123, 377, 536, 1047, 1155, 2133, 2138, 2193 |
| BssECI | CCNNGG | 6 cut(s) | 734, 1242, 1589, 2567, 2679, 2680 |
| BssMI | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| BssNI | GRCGYC | 1 cut(s) | 1903 |
| BssSI | CACGAG | 1 cut(s) | 205 |
| BssT1I | CCWWGG | 3 cut(s) | 1242, 1589, 2567 |
| Bst2BI | CACGAG | 1 cut(s) | 205 |
| Bst2UI | CCWGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| Bst4CI | ACNGT | 6 cut(s) | 41, 510, 2123, 2599, 2618, 2909 |
| Bst6I | CTCTTC | 4 cut(s) | 92, 912, 1506, 2402 |
| BstACI | GRCGYC | 1 cut(s) | 1903 |
| BstAFI | CTTAAG | 1 cut(s) | 2858 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1535 |
| BstBAI | YACGTR | 2 cut(s) | 1217, 1755 |
| BstC8I | GCNNGC | 5 cut(s) | 687, 1125, 2611, 2632, 2855 |
| BstDEI | CTNAG | 7 cut(s) | 224, 324, 1269, 1632, 1959, 2796, 2849 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1674 |
| BstF5I | GGATG | 4 cut(s) | 616, 1435, 2119, 2142 |
| BstHHI | GCGC | 1 cut(s) | 1103 |
| BstKTI | GATC | 9 cut(s) | 618, 659, 1177, 2071, 2105, 2203, 2761, 2769, 2956 |
| BstMAI | GTCTC | 3 cut(s) | 47, 1872, 2702 |
| BstMBI | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 881, 1211, 1535, 1745, 1799, 2302, 2982 |
| BstNI | CCWGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| BstNSI | RCATGY | 1 cut(s) | 2815 |
| BstSCI | CCNGG | 5 cut(s) | 68, 1002, 1205, 1722, 2679 |
| BstSFI | CTRYAG | 2 cut(s) | 1398, 2892 |
| BstV1I | GCAGC | 3 cut(s) | 1011, 2452, 2779 |
| BstV2I | GAAGAC | 3 cut(s) | 249, 797, 2144 |
| BstX2I | RGATCY | 4 cut(s) | 615, 2102, 2200, 2953 |
| BstYI | RGATCY | 4 cut(s) | 615, 2102, 2200, 2953 |
| BsuI | GTATCC | 1 cut(s) | 2212 |
| BsuRI | GGCC | 2 cut(s) | 1205, 1562 |
| BtsCI | GGATG | 4 cut(s) | 616, 1435, 2119, 2142 |
| BtsI | GCAGTG | 1 cut(s) | 1395 |
| BtsIMutI | CAGTG | 5 cut(s) | 1040, 1395, 1611, 2128, 2769 |
| BveI | ACCTGC | 1 cut(s) | 1798 |
| Cac8I | GCNNGC | 5 cut(s) | 687, 1125, 2611, 2632, 2855 |
| CfoI | GCGC | 1 cut(s) | 1103 |
| Cfr13I | GGNCC | 3 cut(s) | 2393, 2676, 2882 |
| CseI | GACGC | 1 cut(s) | 1911 |
| CsiI | ACCWGGT | 2 cut(s) | 68, 1722 |
| Csp6I | GTAC | 3 cut(s) | 529, 1452, 2082 |
| CviAII | CATG | 8 cut(s) | 159, 1150, 1922, 2047, 2297, 2743, 2812, 2836 |
| CviQI | GTAC | 3 cut(s) | 529, 1452, 2082 |
| DdeI | CTNAG | 7 cut(s) | 224, 324, 1269, 1632, 1959, 2796, 2849 |
| DpnI | GATC | 9 cut(s) | 617, 658, 1176, 2070, 2104, 2202, 2760, 2768, 2955 |
| DpnII | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| DraI | TTTAAA | 1 cut(s) | 276 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1159 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1159 |
| EaeI | YGGCCR | 1 cut(s) | 1203 |
| Eam1104I | CTCTTC | 4 cut(s) | 92, 912, 1506, 2402 |
| EarI | CTCTTC | 4 cut(s) | 92, 912, 1506, 2402 |
| Eco130I | CCWWGG | 3 cut(s) | 1242, 1589, 2567 |
| Eco24I | GRGCYC | 1 cut(s) | 2007 |
| Eco47I | GGWCC | 3 cut(s) | 2393, 2676, 2882 |
| Eco57I | CTGAAG | 3 cut(s) | 447, 1881, 2244 |
| Eco72I | CACGTG | 1 cut(s) | 1217 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1674 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2393 |
| EcoRI | GAATTC | 3 cut(s) | 262, 437, 2417 |
| EcoRII | CCWGG | 5 cut(s) | 68, 1002, 1205, 1722, 2679 |
| EcoT14I | CCWWGG | 3 cut(s) | 1242, 1589, 2567 |
| EcoT22I | ATGCAT | 2 cut(s) | 1750, 2987 |
| EcoT38I | GRGCYC | 1 cut(s) | 2007 |
| ErhI | CCWWGG | 3 cut(s) | 1242, 1589, 2567 |
| FaeI | CATG | 8 cut(s) | 162, 1153, 1925, 2050, 2300, 2746, 2815, 2839 |
| FaqI | GGGAC | 1 cut(s) | 2662 |
| FatI | CATG | 8 cut(s) | 158, 1149, 1921, 2046, 2296, 2742, 2811, 2835 |
| FauI | CCCGC | 2 cut(s) | 636, 2190 |
| FblI | GTMKAC | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 5 cut(s) | 211, 1000, 1936, 2441, 2793 |
| FokI | GGATG | 4 cut(s) | 623, 1442, 2126, 2149 |
| FriOI | GRGCYC | 1 cut(s) | 2007 |
| Fsp4HI | GCNGC | 5 cut(s) | 211, 1000, 1936, 2441, 2793 |
| FspBI | CTAG | 8 cut(s) | 702, 840, 1449, 1520, 1617, 1676, 1766, 2610 |
| GlaI | GCGC | 1 cut(s) | 1102 |
| GluI | GCNGC | 5 cut(s) | 211, 1000, 1936, 2441, 2793 |
| GsaI | CCCAGC | 1 cut(s) | 2472 |
| HaeIII | GGCC | 2 cut(s) | 1205, 1562 |
| HapII | CCGG | 2 cut(s) | 662, 818 |
| HgaI | GACGC | 1 cut(s) | 1911 |
| HhaI | GCGC | 1 cut(s) | 1103 |
| Hin1I | GRCGYC | 1 cut(s) | 1903 |
| Hin1II | CATG | 8 cut(s) | 162, 1153, 1925, 2050, 2300, 2746, 2815, 2839 |
| Hin6I | GCGC | 1 cut(s) | 1101 |
| HinP1I | GCGC | 1 cut(s) | 1101 |
| HincII | GTYRAC | 1 cut(s) | 200 |
| HindII | GTYRAC | 1 cut(s) | 200 |
| HindIII | AAGCTT | 2 cut(s) | 180, 2855 |
| HpaII | CCGG | 2 cut(s) | 662, 818 |
| HphI | GGTGA | 8 cut(s) | 58, 265, 403, 413, 479, 679, 782, 1901 |
| Hpy166II | GTNNAC | 4 cut(s) | 200, 256, 670, 2126 |
| Hpy8I | GTNNAC | 4 cut(s) | 200, 256, 670, 2126 |
| Hpy99I | CGWCG | 1 cut(s) | 2618 |
| HpyAV | CCTTC | 9 cut(s) | 934, 1322, 1868, 1919, 2440, 2641, 2731, 2743, 2920 |
| HpyCH4III | ACNGT | 6 cut(s) | 41, 510, 2123, 2599, 2618, 2909 |
| HpyCH4IV | ACGT | 3 cut(s) | 1216, 1639, 1754 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 881, 1211, 1535, 1745, 1799, 2302, 2982 |
| HpyF3I | CTNAG | 7 cut(s) | 224, 324, 1269, 1632, 1959, 2796, 2849 |
| HpySE526I | ACGT | 3 cut(s) | 1216, 1639, 1754 |
| Hsp92I | GRCGYC | 1 cut(s) | 1903 |
| Hsp92II | CATG | 8 cut(s) | 162, 1153, 1925, 2050, 2300, 2746, 2815, 2839 |
| HspAI | GCGC | 1 cut(s) | 1101 |
| Kzo9I | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| LguI | GCTCTTC | 1 cut(s) | 92 |
| LmnI | GCTCC | 2 cut(s) | 4, 2310 |
| Lsp1109I | GCAGC | 3 cut(s) | 1011, 2452, 2779 |
| LweI | GCATC | 2 cut(s) | 1525, 1675 |
| MabI | ACCWGGT | 2 cut(s) | 68, 1722 |
| MaeI | CTAG | 8 cut(s) | 702, 840, 1449, 1520, 1617, 1676, 1766, 2610 |
| MaeII | ACGT | 3 cut(s) | 1216, 1639, 1754 |
| MaeIII | GTNAC | 3 cut(s) | 368, 1640, 2233 |
| MalI | GATC | 9 cut(s) | 617, 658, 1176, 2070, 2104, 2202, 2760, 2768, 2955 |
| MboI | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| MfeI | CAATTG | 1 cut(s) | 1848 |
| MflI | RGATCY | 4 cut(s) | 615, 2102, 2200, 2953 |
| MhlI | GDGCHC | 3 cut(s) | 104, 2007, 3003 |
| MlsI | TGGCCA | 1 cut(s) | 1205 |
| MluNI | TGGCCA | 1 cut(s) | 1205 |
| MlyI | GAGTC | 6 cut(s) | 455, 785, 1412, 2158, 2419, 2702 |
| MmeI | TCCRAC | 3 cut(s) | 479, 838, 1395 |
| Mox20I | TGGCCA | 1 cut(s) | 1205 |
| Mph1103I | ATGCAT | 2 cut(s) | 1750, 2987 |
| MroXI | GAANNNNTTC | 3 cut(s) | 594, 1017, 1671 |
| MscI | TGGCCA | 1 cut(s) | 1205 |
| MseI | TTAA | 7 cut(s) | 275, 603, 1112, 1179, 2423, 2724, 2859 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1094 |
| Msp20I | TGGCCA | 1 cut(s) | 1205 |
| MspA1I | CMGCKG | 1 cut(s) | 2443 |
| MspCI | CTTAAG | 1 cut(s) | 2858 |
| MspI | CCGG | 2 cut(s) | 662, 818 |
| MspR9I | CCNGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| MunI | CAATTG | 1 cut(s) | 1848 |
| Mva1269I | GAATGC | 1 cut(s) | 1748 |
| MvaI | CCWGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 881, 1211, 1535, 1745, 1799, 2302, 2982 |
| NdeII | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| NheI | GCTAGC | 1 cut(s) | 2609 |
| NlaIII | CATG | 8 cut(s) | 162, 1153, 1925, 2050, 2300, 2746, 2815, 2839 |
| NlaIV | GGNNCC | 4 cut(s) | 92, 2202, 2306, 2678 |
| NmuCI | GTSAC | 2 cut(s) | 1640, 2233 |
| NsiI | ATGCAT | 2 cut(s) | 1750, 2987 |
| NspI | RCATGY | 1 cut(s) | 2815 |
| OliI | CACNNNNGTG | 1 cut(s) | 1094 |
| PaqCI | CACCTGC | 1 cut(s) | 1798 |
| PasI | CCCWGGG | 1 cut(s) | 2680 |
| PciSI | GCTCTTC | 1 cut(s) | 92 |
| PctI | GAATGC | 1 cut(s) | 1748 |
| PdmI | GAANNNNTTC | 3 cut(s) | 594, 1017, 1671 |
| PkrI | GCNGC | 5 cut(s) | 212, 1001, 1937, 2442, 2794 |
| PleI | GAGTC | 6 cut(s) | 454, 784, 1412, 2157, 2418, 2701 |
| PmaCI | CACGTG | 1 cut(s) | 1217 |
| PmlI | CACGTG | 1 cut(s) | 1217 |
| PpsI | GAGTC | 6 cut(s) | 454, 784, 1412, 2157, 2418, 2701 |
| Ppu21I | YACGTR | 2 cut(s) | 1217, 1755 |
| PpuMI | RGGWCCY | 1 cut(s) | 2393 |
| Psp5II | RGGWCCY | 1 cut(s) | 2393 |
| Psp6I | CCWGG | 5 cut(s) | 68, 1002, 1205, 1722, 2679 |
| PspCI | CACGTG | 1 cut(s) | 1217 |
| PspFI | CCCAGC | 1 cut(s) | 2468 |
| PspGI | CCWGG | 5 cut(s) | 68, 1002, 1205, 1722, 2679 |
| PspN4I | GGNNCC | 4 cut(s) | 92, 2202, 2306, 2678 |
| PspPI | GGNCC | 3 cut(s) | 2393, 2676, 2882 |
| PspPPI | RGGWCCY | 1 cut(s) | 2393 |
| PstI | CTGCAG | 1 cut(s) | 1402 |
| PsuI | RGATCY | 4 cut(s) | 615, 2102, 2200, 2953 |
| RsaI | GTAC | 3 cut(s) | 530, 1453, 2083 |
| RsaNI | GTAC | 3 cut(s) | 529, 1452, 2082 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1094 |
| SalI | GTCGAC | 1 cut(s) | 198 |
| SapI | GCTCTTC | 1 cut(s) | 92 |
| SaqAI | TTAA | 7 cut(s) | 275, 603, 1112, 1179, 2423, 2724, 2859 |
| SatI | GCNGC | 5 cut(s) | 211, 1000, 1936, 2441, 2793 |
| Sau3AI | GATC | 9 cut(s) | 615, 656, 1174, 2068, 2102, 2200, 2758, 2766, 2953 |
| Sau96I | GGNCC | 3 cut(s) | 2393, 2676, 2882 |
| ScaI | AGTACT | 2 cut(s) | 530, 1453 |
| SchI | GAGTC | 6 cut(s) | 455, 785, 1412, 2158, 2419, 2702 |
| ScrFI | CCNGG | 5 cut(s) | 70, 1004, 1207, 1724, 2681 |
| SduI | GDGCHC | 3 cut(s) | 104, 2007, 3003 |
| SexAI | ACCWGGT | 2 cut(s) | 68, 1722 |
| SfaNI | GCATC | 2 cut(s) | 1525, 1675 |
| SfcI | CTRYAG | 2 cut(s) | 1398, 2892 |
| SinI | GGWCC | 3 cut(s) | 2393, 2676, 2882 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1094 |
| SmlI | CTYRAG | 4 cut(s) | 619, 2252, 2507, 2858 |
| SmoI | CTYRAG | 4 cut(s) | 619, 2252, 2507, 2858 |
| SsiI | CCGC | 5 cut(s) | 211, 643, 1935, 2197, 2443 |
| SspI | AATATT | 1 cut(s) | 2539 |
| SspMI | CTAG | 8 cut(s) | 702, 840, 1449, 1520, 1617, 1676, 1766, 2610 |
| StyD4I | CCNGG | 5 cut(s) | 68, 1002, 1205, 1722, 2679 |
| StyI | CCWWGG | 3 cut(s) | 1242, 1589, 2567 |
| TaaI | ACNGT | 6 cut(s) | 41, 510, 2123, 2599, 2618, 2909 |
| TaiI | ACGT | 3 cut(s) | 1219, 1642, 1757 |
| TaqI | TCGA | 3 cut(s) | 199, 454, 2328 |
| TatI | WGTACW | 2 cut(s) | 528, 1451 |
| TauI | GCSGC | 2 cut(s) | 213, 1938 |
| Tru1I | TTAA | 7 cut(s) | 275, 603, 1112, 1179, 2423, 2724, 2859 |
| Tru9I | TTAA | 7 cut(s) | 275, 603, 1112, 1179, 2423, 2724, 2859 |
| TscAI | CASTG | 5 cut(s) | 1047, 1402, 1611, 2128, 2776 |
| TseFI | GTSAC | 2 cut(s) | 1640, 2233 |
| TseI | GCWGC | 3 cut(s) | 999, 2440, 2792 |
| Tsp45I | GTSAC | 2 cut(s) | 1640, 2233 |
| TspGWI | ACGGA | 2 cut(s) | 944, 1374 |
| TspRI | CASTG | 5 cut(s) | 1047, 1402, 1611, 2128, 2776 |
| Vha464I | CTTAAG | 1 cut(s) | 2858 |
| VpaK11BI | GGWCC | 3 cut(s) | 2393, 2676, 2882 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1674 |
| XbaI | TCTAGA | 3 cut(s) | 839, 1519, 1765 |
| XceI | RCATGY | 1 cut(s) | 2815 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1928 |
| XmiI | GTMKAC | 1 cut(s) | 199 |
| XmnI | GAANNNNTTC | 3 cut(s) | 594, 1017, 1671 |
| XspI | CTAG | 8 cut(s) | 702, 840, 1449, 1520, 1617, 1676, 1766, 2610 |
| ZrmI | AGTACT | 2 cut(s) | 530, 1453 |
| Zsp2I | ATGCAT | 2 cut(s) | 1750, 2987 |