Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005086

Physical Location & Seq

Genomic Coordinates Reverse (-)

21868280 .. 21870286

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1150200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCCAGGCAAGCACGAGAAATTGAGAGCAGGGATAGGGACAGAAACAATATTCAGACTCTGAATGATGAAATTTCAGATGAAACTGTAAATGAAATTTCGGATGAAACAGAAGCTGTCAAACGGCATGGAGACGAGCAAGAAAATATTCTACCCAACCTTGTAAATGGAGATTTCAGGCAAAGTGAGGGTAGTGATGATACTTCTTCTAGTAAAAAGTTAGACTTTGTTGAGGATGGGAATAATCAAACTTCTAGTATTTCAAATATAGAGGTTTCAGATGATCGGGAAAGCACTAACCAGGATGTAACAAAGTCTGAACAGAATTTACACTTACCAGACAATGCTCCTTTTAGGGAGTCCAGAAAGTCCAGCAATGGTTCCCTGCAAGTAAAACCAAGGTCAGTGAAAGAAGCTAGGGAGTATCTTTCTACAAAAGATGACAAAACAAAGCTAAATGAAGAGCTCCGGTTTGAACCTGTCCCTAGAAGTGATGTTCTTGGAAGGCTACAAAGTGCTAAAGACTTTGGTAACAATGGAAGCCAGGGAGAGTTCGTGGTCAGCAATGTTTTAGCTTCTGTGGTTCCAGATGAAACATCAGATCCTCCATCTACTGAAAATAGTAACAGTGATTCAATGATAGAATCATCTGTTAAATATGAGAAGTGGATGGAGGAAAACTTTAATGAATTTGAACCTATAGCTAAGAAGATTGGAGTTGGTTTTAGAGATAATTACATGGTTTCAAGAGGAAAAGCAGATGAAGAATCAATTATGAGTTCGGACATGACACAGCTTGGATCTAACGAAGAAGATGACAGTGAACTTGAATGGATGAAAGATGATAGTCTAAGGGAAATTGTCCTTCAAGTCCGAGACAATGAGTTGGCAGGAAGGGATCCGTTTCATATGATGGATGCTGAAGATAAGGATGCATTTTTTAAGGGTCTTGAGAAGAAAGTTGAGAAAGAGAGTACAAACCTGACGAAACTGCATGAGTTACTCCATTCGAACATTGAAAACCTCACTTATGGTGCAGACGGTATCAGCATCTATGATCCACTAGAGAAAATTATACCCCGCTGGAAAGGTCCCCCATTAGAAAAGAGTCCTGAATTCTTGAATTATTTCCAAGAGCAGCGGAAGTCAATTTTTGCTGAGAATGATGGGACTTCGGTGAATAAAGACGAGCAGAACTTTCTTCAAAACTCAACAGGATCCCAATCCCATGAGAATATTGCTGCCACTCCCATAACCAATGACCCAAATAAGAAGGATATTAGAAGTTCAAAGACAATTATAGAAGGGAGCGATGGTTCTGTTAGGGCTGGAAAAAAATCAGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

450

Amino Acids

50.62

Weight (kDa)

4.64

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61780 AT5G28320 AT5G28400
fragaria_vesca	FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16531 FvH4_7g16560
malus_domestica	MD01G1081300.v1.1 MD07G1150200.v1.1 MD07G1150300.v1.1
prunus_persica	Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1
pyrus_communis	pycom01g10920 pycom07g14870
rosa_chinensis	RchiOBHm_Chr1g0359591
rosa_laevigata	RLG00000027859
rosa_multiflora	Rmu_sc0002556.1_g000023 Rmu_sc0013097.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296900
rosa_rugosa	Rorug01G0272300 Rorug03G0106700
rosa_samantha	Rh1AG285500 Rh1BG251900 Rh1CG269300 Rh1DG280800
rosa_wichuraiana	Rw1G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1081, 1141
AclWI	GGATC	7 cut(s)	596, 808, 893, 906, 1052, 1212, 1225
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	72, 96, 325, 689, 1115
AcuI	CTGAAG	1 cut(s)	942
AfaI	GTAC	1 cut(s)	976
AjnI	CCWGG	3 cut(s)	5, 300, 543
AloI	GAACNNNNNNTCC	2 cut(s)	1300, 1332
AluBI	AGCT	7 cut(s)	116, 416, 454, 466, 575, 704, 796
AluI	AGCT	7 cut(s)	116, 416, 454, 466, 575, 704, 796
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	126, 870
AlwI	GGATC	7 cut(s)	596, 808, 893, 906, 1052, 1212, 1225
AlwNI	CAGNNNCTG	2 cut(s)	61, 116
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	1138, 1241
ApoI	RAATTY	5 cut(s)	72, 96, 325, 689, 1115
Asp700I	GAANNNNTTC	2 cut(s)	147, 1127
AspS9I	GGNCC	1 cut(s)	1091
AsuHPI	GGTGA	1 cut(s)	1189
AsuII	TTCGAA	1 cut(s)	1010
AvaII	GGWCC	1 cut(s)	1091
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	898, 1217
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	1150, 1228
BccI	CCATC	6 cut(s)	230, 616, 664, 907, 1160, 1307
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	3 cut(s)	7, 302, 545
BcoDI	GTCTC	2 cut(s)	126, 870
BfaI	CTAG	5 cut(s)	210, 255, 417, 486, 1064
BfmI	CTRYAG	1 cut(s)	699
BisI	GCNGC	2 cut(s)	1139, 1242
BlsI	GCNGC	2 cut(s)	1140, 1243
Bme1390I	CCNGG	3 cut(s)	7, 302, 545
Bme18I	GGWCC	1 cut(s)	1091
BmgT120I	GGNCC	1 cut(s)	1091
BmiI	GGNNCC	5 cut(s)	382, 585, 900, 1093, 1219
BmrFI	CCNGG	3 cut(s)	7, 302, 545
BmsI	GCATC	3 cut(s)	907, 922, 1059
Bpu14I	TTCGAA	1 cut(s)	1010
BpuEI	CTTGAG	1 cut(s)	971
BsaBI	GATNNNNATC	1 cut(s)	1222
BsaJI	CCNNGG	2 cut(s)	398, 544
BsaWI	WCCGGW	1 cut(s)	468
BsaXI	ACNNNNNCTCC	4 cut(s)	540, 570, 1300, 1330
Bse3DI	GCAATG	2 cut(s)	382, 571
Bse8I	GATNNNNATC	1 cut(s)	1222
BseBI	CCWGG	3 cut(s)	7, 302, 545
BseDI	CCNNGG	2 cut(s)	398, 544
BseGI	GGATG	7 cut(s)	109, 241, 310, 675, 840, 922, 937
BseJI	GATNNNNATC	1 cut(s)	1222
BseMI	GCAATG	2 cut(s)	382, 571
BseMII	CTCAG	1 cut(s)	1149
BseXI	GCAGC	2 cut(s)	1150, 1228
BsgI	GTGCAG	1 cut(s)	1056
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	4 cut(s)	53, 467, 1077, 1183
BsmAI	GTCTC	2 cut(s)	126, 870
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	4 cut(s)	53, 467, 1077, 1183
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	1010
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
BspACI	CCGC	2 cut(s)	1081, 1141
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	1150
BspLI	GGNNCC	5 cut(s)	382, 585, 900, 1093, 1219
BspPI	GGATC	7 cut(s)	596, 808, 893, 906, 1052, 1212, 1225
BspQI	GCTCTTC	1 cut(s)	456
BspT104I	TTCGAA	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	382, 571
BssECI	CCNNGG	2 cut(s)	398, 544
BssMI	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	7, 302, 545
Bst4CI	ACNGT	4 cut(s)	88, 629, 821, 1043
Bst6I	CTCTTC	1 cut(s)	456
BstBI	TTCGAA	1 cut(s)	1010
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	3 cut(s)	705, 851, 1158
BstF5I	GGATG	7 cut(s)	109, 241, 310, 675, 840, 922, 937
BstKTI	GATC	6 cut(s)	286, 604, 803, 901, 1060, 1220
BstMAI	GTCTC	2 cut(s)	126, 870
BstMBI	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	7, 302, 545
BstSCI	CCNGG	3 cut(s)	5, 300, 543
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	1150, 1228
BstX2I	RGATCY	4 cut(s)	601, 800, 898, 1217
BstYI	RGATCY	4 cut(s)	601, 800, 898, 1217
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	1326
BtsCI	GGATG	7 cut(s)	109, 241, 310, 675, 840, 922, 937
BtsIMutI	CAGTG	3 cut(s)	411, 634, 826
Cac8I	GCNNGC	1 cut(s)	12
CaiI	CAGNNNCTG	2 cut(s)	61, 116
Cfr13I	GGNCC	1 cut(s)	1091
Csp6I	GTAC	1 cut(s)	975
CviAII	CATG	5 cut(s)	128, 739, 787, 995, 1229
CviQI	GTAC	1 cut(s)	975
DdeI	CTNAG	3 cut(s)	705, 851, 1158
DpnI	GATC	6 cut(s)	285, 603, 802, 900, 1059, 1219
DpnII	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	1091
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	942
EcoICRI	GAGCTC	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	1091
EcoRI	GAATTC	1 cut(s)	1115
EcoRII	CCWGG	3 cut(s)	5, 300, 543
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	937
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	5 cut(s)	131, 742, 790, 998, 1232
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	4 cut(s)	53, 467, 1077, 1183
FatI	CATG	5 cut(s)	127, 738, 786, 994, 1228
FauI	CCCGC	1 cut(s)	1088
FauNDI	CATATG	1 cut(s)	909
Fnu4HI	GCNGC	2 cut(s)	1139, 1242
FokI	GGATG	7 cut(s)	116, 248, 317, 682, 847, 929, 944
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	1139, 1242
FspBI	CTAG	5 cut(s)	210, 255, 417, 486, 1064
GluI	GCNGC	2 cut(s)	1139, 1242
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	469
Hin1II	CATG	5 cut(s)	131, 742, 790, 998, 1232
HinfI	GANTC	6 cut(s)	58, 359, 632, 644, 767, 1108
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	1 cut(s)	1189
Hpy166II	GTNNAC	1 cut(s)	824
Hpy188I	TCNGA	9 cut(s)	57, 63, 79, 103, 280, 319, 601, 784, 875
Hpy188III	TCNNGA	8 cut(s)	287, 363, 587, 747, 950, 1112, 1120, 1341
Hpy8I	GTNNAC	1 cut(s)	824
HpyAV	CCTTC	5 cut(s)	498, 875, 888, 1267, 1298
HpyCH4III	ACNGT	4 cut(s)	88, 629, 821, 1043
HpyCH4V	TGCA	4 cut(s)	388, 935, 994, 1037
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	705, 851, 1158
Hsp92II	CATG	5 cut(s)	131, 742, 790, 998, 1232
Kzo9I	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	352, 471, 1308
Lsp1109I	GCAGC	2 cut(s)	1150, 1228
LweI	GCATC	3 cut(s)	907, 922, 1059
MaeI	CTAG	5 cut(s)	210, 255, 417, 486, 1064
MaeIII	GTNAC	4 cut(s)	307, 530, 623, 999
MalI	GATC	6 cut(s)	285, 603, 802, 900, 1059, 1219
MboI	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
MboII	GAAGA	9 cut(s)	198, 473, 721, 776, 821, 824, 935, 967, 1193
MflI	RGATCY	4 cut(s)	601, 800, 898, 1217
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	52, 368, 1117
MnlI	CCTC	7 cut(s)	181, 226, 265, 615, 667, 743, 1034
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	937
MroXI	GAANNNNTTC	2 cut(s)	147, 1127
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	654, 684, 942
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	1083, 1141
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	3 cut(s)	7, 302, 545
MvaI	CCWGG	3 cut(s)	7, 302, 545
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
NlaIII	CATG	5 cut(s)	131, 742, 790, 998, 1232
NlaIV	GGNNCC	5 cut(s)	382, 585, 900, 1093, 1219
NsiI	ATGCAT	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	1010
PciSI	GCTCTTC	1 cut(s)	456
PdmI	GAANNNNTTC	2 cut(s)	147, 1127
PfeI	GAWTC	3 cut(s)	632, 644, 767
PkrI	GCNGC	2 cut(s)	1140, 1243
PleI	GAGTC	3 cut(s)	52, 367, 1116
PpsI	GAGTC	3 cut(s)	52, 367, 1116
PpuMI	RGGWCCY	1 cut(s)	1091
Psp124BI	GAGCTC	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	1091
Psp6I	CCWGG	3 cut(s)	5, 300, 543
PspGI	CCWGG	3 cut(s)	5, 300, 543
PspN4I	GGNNCC	5 cut(s)	382, 585, 900, 1093, 1219
PspPI	GGNCC	1 cut(s)	1091
PspPPI	RGGWCCY	1 cut(s)	1091
PsrI	GAACNNNNNNTAC	2 cut(s)	312, 344
PstNI	CAGNNNCTG	2 cut(s)	61, 116
PsuI	RGATCY	4 cut(s)	601, 800, 898, 1217
RsaI	GTAC	1 cut(s)	976
RsaNI	GTAC	1 cut(s)	975
SacI	GAGCTC	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	654, 684, 942
SatI	GCNGC	2 cut(s)	1139, 1242
Sau3AI	GATC	6 cut(s)	283, 601, 800, 898, 1057, 1217
Sau96I	GGNCC	1 cut(s)	1091
SchI	GAGTC	3 cut(s)	52, 368, 1117
ScrFI	CCNGG	3 cut(s)	7, 302, 545
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	3 cut(s)	907, 922, 1059
SfcI	CTRYAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	1010
SinI	GGWCC	1 cut(s)	1091
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SsiI	CCGC	2 cut(s)	1081, 1141
SspI	AATATT	3 cut(s)	52, 148, 1237
SspMI	CTAG	5 cut(s)	210, 255, 417, 486, 1064
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	3 cut(s)	5, 300, 543
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	4 cut(s)	88, 629, 821, 1043
TaqI	TCGA	1 cut(s)	1010
TatI	WGTACW	1 cut(s)	974
TfiI	GAWTC	3 cut(s)	632, 644, 767
Tru1I	TTAA	3 cut(s)	654, 684, 942
Tru9I	TTAA	3 cut(s)	654, 684, 942
TscAI	CASTG	3 cut(s)	411, 634, 826
TseI	GCWGC	2 cut(s)	1138, 1241
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	3 cut(s)	411, 634, 826
VpaK11BI	GGWCC	1 cut(s)	1091
XapI	RAATTY	5 cut(s)	72, 96, 325, 689, 1115
XmnI	GAANNNNTTC	2 cut(s)	147, 1127
XspI	CTAG	5 cut(s)	210, 255, 417, 486, 1064
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.