Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005086

Physical Location & Seq

Genomic Coordinates Reverse (-)

21870656 .. 21871162

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1150300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCTACAGAACCCCATCATTTTCCATCTATTTACTCTTCTGTAACAGCAGAAAAGTTTCGAGCTTTCGCGCAGTTCGGTGGGCTTACCAGCCGCAGAAACTCGCTGAGGAAGAAGATCACTGACGGCCCAAGGGTGAACCAGAATTCCATTCCTTTAACCCCAAGTTCTGAATTTCAGTTTTTGAATAGTAATGTTGTTGATTCTGAGAGTCAGTGTAGTAATTTGATTTCTGATGATAGTGTGAAAGAGAGTAAATTTGGTAATGGGGTTGTTGATGATAGTGTTGCTGAAACGGGTAATGCAGAAGAATCGAATTCGAAGCGTCTTGGTGATTCGGTTTTGTTGAGTAAATTGGAGGGTTGGATGGACAAGTATAGGAGGGATACTGAGTACTGGGGCATTGGTTCGGGTCATATTTTCACTGTTGTGCAAGATTCTGATGGTAGTGTGAAGGCGGTTTCGGTTAATGAGGATGAAATCTTGAGGAGAAGCCGAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.63

Weight (kDa)

5.29

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61780 AT5G28320 AT5G28400
fragaria_vesca	FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16531 FvH4_7g16560
malus_domestica	MD01G1081300.v1.1 MD07G1150200.v1.1 MD07G1150300.v1.1
prunus_persica	Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1
pyrus_communis	pycom01g10920 pycom07g14870
rosa_chinensis	RchiOBHm_Chr1g0359591
rosa_laevigata	RLG00000027859
rosa_multiflora	Rmu_sc0002556.1_g000023 Rmu_sc0013097.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296900
rosa_rugosa	Rorug01G0272300 Rorug03G0106700
rosa_samantha	Rh1AG285500 Rh1BG251900 Rh1CG269300 Rh1DG280800
rosa_wichuraiana	Rw1G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	94, 458
AcsI	RAATTY	4 cut(s)	145, 173, 257, 316
AfaI	GTAC	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	187
AleI	CACNNNNGTG	1 cut(s)	428
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AoxI	GGCC	1 cut(s)	127
ApoI	RAATTY	4 cut(s)	145, 173, 257, 316
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	148, 344
AsuII	TTCGAA	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	107
BccI	CCATC	4 cut(s)	24, 34, 361, 437
BceAI	ACGGC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciVI	GTATCC	1 cut(s)	379
BfmI	CTRYAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	372, 481
BseMII	CTCAG	3 cut(s)	98, 198, 381
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	502
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	94, 458
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	3 cut(s)	99, 199, 382
BspFNI	CGCG	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	107, 207, 390
BstF5I	GGATG	2 cut(s)	372, 481
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	372, 481
BtsIMutI	CAGTG	3 cut(s)	120, 221, 423
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	394
CviJI	RGCY	5 cut(s)	65, 85, 93, 129, 495
CviKI_1	RGCY	5 cut(s)	65, 85, 93, 129, 495
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	107, 207, 390
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	145, 316
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaiI	YATR	2 cut(s)	378, 417
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	2 cut(s)	379, 488
Fsp4HI	GCNGC	1 cut(s)	94
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	5 cut(s)	203, 211, 311, 335, 437
HphI	GGTGA	2 cut(s)	148, 344
Hpy166II	GTNNAC	2 cut(s)	6, 139
Hpy188I	TCNGA	4 cut(s)	172, 208, 235, 442
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	2 cut(s)	6, 139
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	2 cut(s)	305, 433
HpyF3I	CTNAG	3 cut(s)	107, 207, 390
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	3 cut(s)	103, 155, 382
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	4 cut(s)	30, 124, 127, 320
MluCI	AATT	6 cut(s)	145, 173, 223, 257, 316, 353
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	102, 352, 375, 466, 480
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	158, 468
MslI	CAYNNNNRTG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	71
NdeII	GATC	1 cut(s)	117
NspV	TTCGAA	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	203, 311, 335, 437
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	158, 468
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	128
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	1 cut(s)	220
SetI	ASST	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	6 cut(s)	145, 173, 223, 257, 316, 353
SsiI	CCGC	2 cut(s)	94, 458
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	61, 314, 320
TasI	AATT	6 cut(s)	145, 173, 223, 257, 316, 353
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	203, 311, 335, 437
Tru1I	TTAA	2 cut(s)	158, 468
Tru9I	TTAA	2 cut(s)	158, 468
TscAI	CASTG	3 cut(s)	127, 221, 430
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	3 cut(s)	127, 221, 430
XapI	RAATTY	4 cut(s)	145, 173, 257, 316
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	57
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.