Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005086

Physical Location & Seq

Genomic Coordinates Reverse (-)

14175239 .. 14176165

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16531.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTGTATGTTTTGATTGCGTTGTGGGCATTGAAGAAGTTGGTTGGTTCTGGAAATAAAGAAGAGAAATACACAGAATTGGAGAAGGAGATGATGAGGAGAAACATGAAAGCAAGACAGGAGAAAGAGGTGTTAGAAAAGGGCAGCCTGGAAGTGGAAGTTGTTCAAGAATCATCAGAGCTGCCTCTTGTATCTTTTGGAAAGCCTAATCTAGATAGGAAAGAACTTATGAACAGTATTGTGAGTGCAAAGTCGTTAAATGGTAAGCCGGCTGTACCAGATTCTTCAAATTCCATGACCAATAAGTCATCGGAATTTTATTTTAAGGACCATAGTGAAGAGAATCTAGACTCGGCAGATGTTTCTTCTGTAGTAGATTCAAAAGGGGCCAAGAATAGTACTCTTCAAGTGAAACCAAGGGTCATAATGTCAGTAAAAGACGCCAGGGAGTATCTGTCTAGCAAATGTGACAAAAATGAAGAGCTCCGGAATGAACCTGTTCAAGGAAGTGATGCTCTTCCAATGCCACAAAGGGATAAAAATGAGAACCAGGTGGAGGATATGGCTAACAATGCATTTATGTATAAACCTGAAGAAAGTGACGAAGAAGTTGAAGGAGACGAAGGGGACATCATTGATGATGTTCAAAGGCCCCCGTTCTTCATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

4.8

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61780 AT5G28320 AT5G28400
fragaria_vesca	FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16470 FvH4_7g16531 FvH4_7g16560
malus_domestica	MD01G1081300.v1.1 MD07G1150200.v1.1 MD07G1150300.v1.1
prunus_persica	Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1 Prupe.2G189000_v2.0.a1
pyrus_communis	pycom01g10920 pycom07g14870
rosa_chinensis	RchiOBHm_Chr1g0359591
rosa_laevigata	RLG00000027859
rosa_multiflora	Rmu_sc0002556.1_g000023 Rmu_sc0013097.1_g000007
rosa_roxburghii	Rroxscaffold_4G00296900
rosa_rugosa	Rorug01G0272300 Rorug03G0106700
rosa_samantha	Rh1AG285500 Rh1BG251900 Rh1CG269300 Rh1DG280800
rosa_wichuraiana	Rw1G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AccIII	TCCGGA	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	289, 314
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	276, 400
AfiI	CCNNNNNNNGG	3 cut(s)	154, 503, 556
AgsI	TTSAA	8 cut(s)	34, 167, 288, 381, 407, 503, 614, 647
AjnI	CCWGG	3 cut(s)	147, 443, 549
AluBI	AGCT	2 cut(s)	181, 484
AluI	AGCT	2 cut(s)	181, 484
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	1 cut(s)	612
Aor13HI	TCCGGA	1 cut(s)	486
AoxI	GGCC	2 cut(s)	387, 650
ApeKI	GCWGC	2 cut(s)	144, 181
ApoI	RAATTY	2 cut(s)	289, 314
Asp700I	GAANNNNTTC	2 cut(s)	162, 498
AspS9I	GGNCC	3 cut(s)	328, 387, 651
AvaII	GGWCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	156, 168
BciT130I	CCWGG	3 cut(s)	149, 445, 551
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	3 cut(s)	212, 347, 459
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	2 cut(s)	145, 182
BlsI	GCNGC	2 cut(s)	146, 183
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	3 cut(s)	149, 445, 551
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	3 cut(s)	328, 387, 651
BmiI	GGNNCC	2 cut(s)	388, 653
BmrFI	CCNGG	3 cut(s)	149, 445, 551
BmsI	GCATC	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	416, 444
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 503, 556
Bse118I	RCCGGY	1 cut(s)	268
BseAI	TCCGGA	1 cut(s)	486
BseBI	CCWGG	3 cut(s)	149, 445, 551
BseDI	CCNNGG	2 cut(s)	416, 444
BseLI	CCNNNNNNNGG	3 cut(s)	154, 503, 556
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	156, 168
BshFI	GGCC	2 cut(s)	389, 652
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	269, 487
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	154, 503, 556
BsmAI	GTCTC	1 cut(s)	612
BsmBI	CGTCTC	1 cut(s)	612
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	389, 652
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	486
BspANI	GGCC	2 cut(s)	389, 652
BspEI	TCCGGA	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	388, 653
BspQI	GCTCTTC	2 cut(s)	474, 522
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	416, 444
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	149, 445, 551
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	5 cut(s)	57, 333, 408, 474, 522
BstACI	GRCGYC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	612
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 572
BstNI	CCWGG	3 cut(s)	149, 445, 551
BstSCI	CCNGG	3 cut(s)	147, 443, 549
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	156, 168
BsuRI	GGCC	2 cut(s)	389, 652
Cac8I	GCNNGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	328, 387, 651
CseI	GACGC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	275, 399
CviAII	CATG	2 cut(s)	106, 295
CviJI	RGCY	9 cut(s)	147, 181, 205, 268, 272, 389, 484, 566, 652
CviKI_1	RGCY	9 cut(s)	147, 181, 205, 268, 272, 389, 484, 566, 652
CviQI	GTAC	2 cut(s)	275, 399
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
Eam1104I	CTCTTC	5 cut(s)	57, 333, 408, 474, 522
EarI	CTCTTC	5 cut(s)	57, 333, 408, 474, 522
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	484
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	651
EcoRII	CCWGG	3 cut(s)	147, 443, 549
EcoT14I	CCWWGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	612
FaeI	CATG	2 cut(s)	109, 298
FaiI	YATR	9 cut(s)	9, 107, 230, 296, 333, 425, 563, 581, 585
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	2 cut(s)	105, 294
Fnu4HI	GCNGC	2 cut(s)	145, 182
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	145, 182
FspBI	CTAG	3 cut(s)	212, 347, 459
GluI	GCNGC	2 cut(s)	145, 182
HaeIII	GGCC	2 cut(s)	389, 652
HapII	CCGG	2 cut(s)	269, 487
HgaI	GACGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	109, 298
HinfI	GANTC	5 cut(s)	170, 281, 343, 350, 377
HpaII	CCGG	2 cut(s)	269, 487
Hpy188I	TCNGA	2 cut(s)	178, 313
Hpy188III	TCNNGA	5 cut(s)	51, 167, 212, 347, 487
HpyAV	CCTTC	3 cut(s)	79, 608, 617
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	248, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 572
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	109, 298
Kpn2I	TCCGGA	1 cut(s)	486
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
LguI	GCTCTTC	2 cut(s)	474, 522
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	2 cut(s)	156, 168
LweI	GCATC	1 cut(s)	502
MabI	ACCWGGT	1 cut(s)	549
MaeI	CTAG	3 cut(s)	212, 347, 459
MaeIII	GTNAC	2 cut(s)	467, 599
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	3 cut(s)	77, 289, 314
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	4 cut(s)	90, 121, 195, 550
Mph1103I	ATGCAT	1 cut(s)	577
MroI	TCCGGA	1 cut(s)	486
MroNI	GCCGGC	1 cut(s)	268
MroXI	GAANNNNTTC	2 cut(s)	162, 498
MseI	TTAA	2 cut(s)	257, 324
MspI	CCGG	2 cut(s)	269, 487
MspR9I	CCNGG	3 cut(s)	149, 445, 551
MvaI	CCWGG	3 cut(s)	149, 445, 551
MwoI	GCNNNNNNNGC	2 cut(s)	26, 572
NaeI	GCCGGC	1 cut(s)	270
NgoMIV	GCCGGC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	109, 298
NlaIV	GGNNCC	2 cut(s)	388, 653
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	2 cut(s)	467, 599
NsiI	ATGCAT	1 cut(s)	577
PciSI	GCTCTTC	2 cut(s)	474, 522
PdiI	GCCGGC	1 cut(s)	270
PdmI	GAANNNNTTC	2 cut(s)	162, 498
PfeI	GAWTC	4 cut(s)	170, 281, 343, 377
PkrI	GCNGC	2 cut(s)	146, 183
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	3 cut(s)	147, 443, 549
PspGI	CCWGG	3 cut(s)	147, 443, 549
PspN4I	GGNNCC	2 cut(s)	388, 653
PspPI	GGNCC	3 cut(s)	328, 387, 651
RsaI	GTAC	2 cut(s)	276, 400
RsaNI	GTAC	2 cut(s)	275, 399
SacI	GAGCTC	1 cut(s)	486
SapI	GCTCTTC	2 cut(s)	474, 522
SaqAI	TTAA	2 cut(s)	257, 324
SatI	GCNGC	2 cut(s)	145, 182
Sau96I	GGNCC	3 cut(s)	328, 387, 651
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	149, 445, 551
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	6 cut(s)	132, 183, 486, 499, 555, 592
SexAI	ACCWGGT	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	328
Sse9I	AATT	3 cut(s)	77, 289, 314
SspMI	CTAG	3 cut(s)	212, 347, 459
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	147, 443, 549
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	236
TasI	AATT	3 cut(s)	77, 289, 314
TatI	WGTACW	1 cut(s)	398
TfiI	GAWTC	4 cut(s)	170, 281, 343, 377
Tru1I	TTAA	2 cut(s)	257, 324
Tru9I	TTAA	2 cut(s)	257, 324
TseFI	GTSAC	2 cut(s)	467, 599
TseI	GCWGC	2 cut(s)	144, 181
Tsp45I	GTSAC	2 cut(s)	467, 599
TspDTI	ATGAA	5 cut(s)	122, 245, 492, 507, 652
VpaK11BI	GGWCC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	501
XapI	RAATTY	2 cut(s)	289, 314
XbaI	TCTAGA	2 cut(s)	211, 346
XmnI	GAANNNNTTC	2 cut(s)	162, 498
XspI	CTAG	3 cut(s)	212, 347, 459
ZrmI	AGTACT	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.