FvH4_7g18380

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016393
Physical Location & Seq
Reverse (-)
15374065 .. 15375483
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18380.t1

Sequence Viewer

Length: 759 bp
ATGGAAGATCAGTGTAGTCCTTTCAGCTGGGATTTTTGCTATCAGGAAGAGGGAATAGAAGATCAGTTACGGCATTCTCTTCTGTACACAACCTTGGAGCTTGAGACAACAATTGCATCAGCAAAGGAGAAGATTTCGAAGAGAGATGAAGAAGTTGTTCATCTCAAAGATCTCCTAACCAGAGTCATCAAAGAGAGAGATGAGGCCAAAGCCAAATGCCGGAGACTAGTGTTGGAGAAGCTCATGCTCCAACAGCAACTGCAAAAACAACAAGAACAAGAACTTGTGTTTGTTCCTCAAACTCATGAGGTTGAGTCAAAAGGCAGTGACTCTAGCAAGCACTACTTTGCTGCAGCTTCTTCCGACTCCGATGAGAACATTTCATCTCCAAATGCTGCAGACCCAGTTATGTCACAAGATGTGTTAACACAACTATTAGGTGATCAGAAGGCATTGCCAGAGAAAGGGAAGCTATTACAAGCAGTAATTGATGCAGGACCTCTCCTCCAAACTCTTCTGCTGGCTGGACCTCTGCCTCAGTGGCAGCACCCACCTCCCCAGCTCAAGTCAATTGAGATTCCCCCAGTCACTATTTCTCCTCCAACACCACATCTTCTGCAACCCCAGGACTCTTGCATTAGTACTAGTAGCAACACTGCTTGTTTCGGTAACAAAAGAAGCCTGGTGCATAGTGATGGTTCTGGTTCTGGTTCTGATTCTTCACCCAAGACCAAGTATCAAAAGGTTGTTCACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

253

Amino Acids

28.03

Weight (kDa)

5.39

Isoelectric Point (pI)

72.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 21 - 249 4.5e-72 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 86, 643
AfiI CCNNNNNNNGG 2 cut(s) 219, 464
AhlI ACTAGT 2 cut(s) 226, 644
AjnI CCWGG 2 cut(s) 624, 681
AluBI AGCT 6 cut(s) 27, 100, 241, 356, 472, 562
AluI AGCT 6 cut(s) 27, 100, 241, 356, 472, 562
Alw26I GTCTC 2 cut(s) 98, 217
AlwNI CAGNNNCTG 1 cut(s) 259
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 4 cut(s) 350, 353, 395, 544
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 497, 527
AsuHPI GGTGA 2 cut(s) 452, 714
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 497, 527
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BbvI GCAGC 4 cut(s) 337, 365, 382, 556
BccI CCATC 1 cut(s) 689
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 2 cut(s) 626, 683
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 98, 217
BcuI ACTAGT 2 cut(s) 226, 644
BfaI CTAG 3 cut(s) 227, 333, 645
BfmI CTRYAG 2 cut(s) 351, 396
BglI GCCNNNNNGGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 169
BisI GCNGC 4 cut(s) 351, 354, 396, 545
BlsI GCNGC 4 cut(s) 352, 355, 397, 546
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 2 cut(s) 626, 683
Bme18I GGWCC 2 cut(s) 497, 527
BmgT120I GGNCC 2 cut(s) 497, 527
BmrFI CCNGG 2 cut(s) 626, 683
BmrI ACTGGG 2 cut(s) 398, 578
BmsI GCATC 2 cut(s) 125, 481
BmuI ACTGGG 2 cut(s) 398, 578
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 122, 548
BsaJI CCNNGG 2 cut(s) 93, 624
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 580, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 464
Bse1I ACTGG 2 cut(s) 404, 584
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 2 cut(s) 626, 683
BseDI CCNNGG 2 cut(s) 93, 624
BseLI CCNNNNNNNGG 2 cut(s) 219, 464
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 2 cut(s) 404, 584
BseRI GAGGAG 2 cut(s) 494, 588
BseXI GCAGC 4 cut(s) 337, 365, 382, 556
BseYI CCCAGC 2 cut(s) 27, 558
BshFI GGCC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 219, 464
BsmAI GTCTC 2 cut(s) 98, 217
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 4 cut(s) 7, 61, 169, 442
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 550
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 2 cut(s) 355, 400
BspT104I TTCGAA 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 452
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 2 cut(s) 404, 584
BssECI CCNNGG 2 cut(s) 93, 624
BssMI GATC 4 cut(s) 7, 61, 169, 442
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 626, 683
Bst6I CTCTTC 4 cut(s) 42, 84, 134, 519
BstAUI TGTACA 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 338, 522
BstDEI CTNAG 1 cut(s) 537
BstKTI GATC 4 cut(s) 10, 64, 172, 445
BstMAI GTCTC 2 cut(s) 98, 217
BstMBI GATC 4 cut(s) 7, 61, 169, 442
BstMWI GCNNNNNNNGC 2 cut(s) 253, 541
BstNI CCWGG 2 cut(s) 626, 683
BstSCI CCNGG 2 cut(s) 624, 681
BstSFI CTRYAG 2 cut(s) 351, 396
BstV1I GCAGC 4 cut(s) 337, 365, 382, 556
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 1 cut(s) 206
BtsI GCAGTG 2 cut(s) 331, 654
BtsIMutI CAGTG 4 cut(s) 17, 331, 545, 654
Cac8I GCNNGC 2 cut(s) 338, 522
CaiI CAGNNNCTG 1 cut(s) 259
CciI TCATGA 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 497, 527
Csp6I GTAC 2 cut(s) 85, 642
CviAII CATG 2 cut(s) 244, 305
CviQI GTAC 2 cut(s) 85, 642
DdeI CTNAG 1 cut(s) 537
DpnI GATC 4 cut(s) 9, 63, 171, 444
DpnII GATC 4 cut(s) 7, 61, 169, 442
Eam1104I CTCTTC 4 cut(s) 42, 84, 134, 519
EarI CTCTTC 4 cut(s) 42, 84, 134, 519
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 497, 527
EcoO109I RGGNCCY 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 624, 681
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 247, 308
FaiI YATR 4 cut(s) 245, 306, 410, 690
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 2 cut(s) 243, 304
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 351, 354, 396, 545
Fsp4HI GCNGC 4 cut(s) 351, 354, 396, 545
FspBI CTAG 3 cut(s) 227, 333, 645
GluI GCNGC 4 cut(s) 351, 354, 396, 545
GsaI CCCAGC 2 cut(s) 31, 562
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 220
Hin1II CATG 2 cut(s) 247, 308
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 7 cut(s) 183, 314, 329, 365, 577, 629, 716
HpaI GTTAAC 1 cut(s) 426
HpaII CCGG 1 cut(s) 220
HphI GGTGA 2 cut(s) 452, 714
Hpy166II GTNNAC 3 cut(s) 87, 426, 751
Hpy188I TCNGA 4 cut(s) 364, 370, 447, 715
Hpy188III TCNNGA 2 cut(s) 44, 305
Hpy8I GTNNAC 3 cut(s) 87, 426, 751
HpyAV CCTTC 1 cut(s) 442
HpyCH4V TGCA 8 cut(s) 116, 262, 353, 398, 494, 619, 636, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 541
HpyF3I CTNAG 1 cut(s) 537
Hsp92II CATG 2 cut(s) 247, 308
Ksp22I TGATCA 1 cut(s) 442
KspAI GTTAAC 1 cut(s) 426
Kzo9I GATC 4 cut(s) 7, 61, 169, 442
LmnI GCTCC 2 cut(s) 97, 252
Lsp1109I GCAGC 4 cut(s) 337, 365, 382, 556
LweI GCATC 2 cut(s) 125, 481
MaeI CTAG 3 cut(s) 227, 333, 645
MaeIII GTNAC 5 cut(s) 66, 326, 411, 586, 668
MalI GATC 4 cut(s) 9, 63, 171, 444
MboI GATC 4 cut(s) 7, 61, 169, 442
MfeI CAATTG 2 cut(s) 111, 570
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 111, 486, 570
MlyI GAGTC 5 cut(s) 192, 323, 323, 359, 623
MmeI TCCRAC 4 cut(s) 213, 274, 387, 626
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 626, 683
MunI CAATTG 2 cut(s) 111, 570
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 2 cut(s) 626, 683
MwoI GCNNNNNNNGC 2 cut(s) 253, 541
NdeII GATC 4 cut(s) 7, 61, 169, 442
NlaIII CATG 2 cut(s) 247, 308
NmuCI GTSAC 3 cut(s) 326, 411, 586
NspV TTCGAA 1 cut(s) 137
PagI TCATGA 1 cut(s) 304
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 577, 716
PkrI GCNGC 4 cut(s) 352, 355, 397, 546
PleI GAGTC 5 cut(s) 191, 322, 323, 359, 623
PpsI GAGTC 5 cut(s) 191, 322, 323, 359, 623
PpuMI RGGWCCY 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 624, 681
PspFI CCCAGC 2 cut(s) 27, 558
PspGI CCWGG 2 cut(s) 624, 681
PspPI GGNCC 2 cut(s) 497, 527
PspPPI RGGWCCY 1 cut(s) 497
PstI CTGCAG 2 cut(s) 355, 400
PstNI CAGNNNCTG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 27
RsaI GTAC 2 cut(s) 86, 643
RsaNI GTAC 2 cut(s) 85, 642
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 4 cut(s) 351, 354, 396, 545
Sau3AI GATC 4 cut(s) 7, 61, 169, 442
Sau96I GGNCC 2 cut(s) 497, 527
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 5 cut(s) 192, 323, 323, 359, 623
ScrFI CCNGG 2 cut(s) 626, 683
SfaNI GCATC 2 cut(s) 125, 481
SfcI CTRYAG 2 cut(s) 351, 396
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 2 cut(s) 497, 527
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 101, 563
SmoI CTYRAG 2 cut(s) 101, 563
SpeI ACTAGT 2 cut(s) 226, 644
Sse9I AATT 3 cut(s) 111, 486, 570
SspMI CTAG 3 cut(s) 227, 333, 645
StyD4I CCNGG 2 cut(s) 624, 681
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 111, 486, 570
TatI WGTACW 2 cut(s) 84, 641
TfiI GAWTC 2 cut(s) 577, 716
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 4 cut(s) 17, 331, 545, 661
TseFI GTSAC 3 cut(s) 326, 411, 586
TseI GCWGC 4 cut(s) 350, 353, 395, 544
Tsp45I GTSAC 3 cut(s) 326, 411, 586
TspDTI ATGAA 3 cut(s) 149, 162, 372
TspRI CASTG 4 cut(s) 17, 331, 545, 661
VpaK11BI GGWCC 2 cut(s) 497, 527
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 3 cut(s) 227, 333, 645
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.