Rroxscaffold_4G00294450

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016393
Physical Location & Seq
Forward (+)
14523753 .. 14525083
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294450.1

Sequence Viewer

Length: 759 bp
ATGGAAGATCAGTGCAGTCCTTTTGGTTGGGATTTTTGCTATCAGGAAGAGGGAATAGAAGCTCAGTTAAGGCATTCTCTTCTGTACACAACCTTGGAGCTTGAGGCAACAATTGTATCAGCAAAGGAGAAGATTTTGAGGAGAGACGAAGAAGTTGTTCATTTCAAAGATCTCCTTACCAGAGTAATCAAAGAGAGAGATGAGGCCAAAGCCAAATGCCGAAGTCTATTGTTGGAGAAGCACATGCTCCAACAACTGCAAAAACAACAACAACAACAACAACAAGTGATTGCTCCTCAAAATCATGAGGTTGAGTCGAAAGGCAGTGACTCGAGCAAGCACTACTTTGCTGCTTCGTCCGACTCCGATGAGAACATCATTTCATCTTCAAATGCAGCAGACCCAGTTATCTCACAAGATGTCTTAACAAAACTATTAGGTGATCAGAAGCCATTGCCAGAGAAAGGGAAGCTATTACAAGCAGTAATCGATGCTGGCCCTCTCCTTCAAAATCTTCTACTGGCTGGACCTCTGCCTCAGTGGCAACATCCACCTCCCCAGCTGAAGTCAATTGAGATTCCACCAGTGGCTATTTCTCCTCCAACACCACATCTTCTGCAGCCCCAAGACTCTTGCATTAGTACTAGTAGCAACACTACTTGTTTCGGTAACAAAAGAAGCCTGGTGCATAGTGATGGTTCTGGTTCTGGTTCTGATTCTTCACCCAAGACCAAGTATCAAAAGGTTGTTCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

252

Amino Acids

28.0

Weight (kDa)

5.76

Isoelectric Point (pI)

68.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 22 - 249 1.4e-68 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 2 cut(s) 86, 643
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 3 cut(s) 166, 390, 509
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 1 cut(s) 681
AluBI AGCT 4 cut(s) 62, 100, 472, 562
AluI AGCT 4 cut(s) 62, 100, 472, 562
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 2 cut(s) 204, 496
ApeKI GCWGC 3 cut(s) 350, 395, 619
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 497, 527
AsuHPI GGTGA 2 cut(s) 452, 714
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 527
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbvI GCAGC 3 cut(s) 337, 407, 631
BccI CCATC 1 cut(s) 689
BciT130I CCWGG 1 cut(s) 683
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 617
BglI GCCNNNNNGGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 351, 396, 620
BlsI GCNGC 3 cut(s) 352, 397, 621
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 497, 527
BmrFI CCNGG 1 cut(s) 683
BmrI ACTGGG 1 cut(s) 398
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse1I ACTGG 3 cut(s) 404, 525, 584
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 77, 551
BseNI ACTGG 3 cut(s) 404, 525, 584
BseRI GAGGAG 3 cut(s) 154, 285, 588
BseXI GCAGC 3 cut(s) 337, 407, 631
BseYI CCCAGC 1 cut(s) 558
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 206, 498
BshVI ATCGAT 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 206, 498
BsoBI CYCGRG 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 7, 169, 442
BspANI GGCC 2 cut(s) 206, 498
BspCNI CTCAG 2 cut(s) 76, 550
BspDI ATCGAT 1 cut(s) 489
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 452
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 3 cut(s) 404, 525, 584
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 7, 169, 442
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 683
Bst6I CTCTTC 2 cut(s) 42, 84
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 338, 496
BstDEI CTNAG 2 cut(s) 63, 537
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 3 cut(s) 10, 172, 445
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 3 cut(s) 7, 169, 442
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 1 cut(s) 617
BstV1I GCAGC 3 cut(s) 337, 407, 631
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 2 cut(s) 206, 498
BsuTUI ATCGAT 1 cut(s) 489
BtsCI GGATG 1 cut(s) 547
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 4 cut(s) 17, 331, 545, 591
Cac8I GCNNGC 2 cut(s) 338, 496
CciI TCATGA 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 497, 527
ClaI ATCGAT 1 cut(s) 489
Csp6I GTAC 2 cut(s) 85, 642
CviAII CATG 2 cut(s) 244, 305
CviQI GTAC 2 cut(s) 85, 642
DdeI CTNAG 2 cut(s) 63, 537
DpnI GATC 3 cut(s) 9, 171, 444
DpnII GATC 3 cut(s) 7, 169, 442
Eam1104I CTCTTC 2 cut(s) 42, 84
EarI CTCTTC 2 cut(s) 42, 84
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 247, 308
FaiI YATR 3 cut(s) 245, 306, 690
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 329, 361
FatI CATG 2 cut(s) 243, 304
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 351, 396, 620
FokI GGATG 1 cut(s) 534
Fsp4HI GCNGC 3 cut(s) 351, 396, 620
FspBI CTAG 1 cut(s) 645
GluI GCNGC 3 cut(s) 351, 396, 620
GsaI CCCAGC 1 cut(s) 562
HaeIII GGCC 2 cut(s) 206, 498
Hin1II CATG 2 cut(s) 247, 308
HinfI GANTC 6 cut(s) 314, 329, 362, 577, 629, 716
HphI GGTGA 2 cut(s) 452, 714
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 4 cut(s) 361, 367, 447, 715
Hpy188III TCNNGA 2 cut(s) 44, 305
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 515
HpyCH4V TGCA 6 cut(s) 15, 259, 395, 619, 636, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 2 cut(s) 63, 537
Hsp92II CATG 2 cut(s) 247, 308
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 7, 169, 442
LmnI GCTCC 3 cut(s) 97, 252, 298
Lsp1109I GCAGC 3 cut(s) 337, 407, 631
LweI GCATC 1 cut(s) 481
MaeI CTAG 1 cut(s) 645
MaeIII GTNAC 2 cut(s) 326, 668
MalI GATC 3 cut(s) 9, 171, 444
MboI GATC 3 cut(s) 7, 169, 442
MboII GAAGA 9 cut(s) 17, 59, 71, 142, 161, 378, 506, 605, 711
MfeI CAATTG 2 cut(s) 111, 570
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 111, 570
MlyI GAGTC 4 cut(s) 323, 323, 356, 623
MmeI TCCRAC 4 cut(s) 213, 274, 384, 626
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 68, 425
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 562
MspR9I CCNGG 1 cut(s) 683
MunI CAATTG 2 cut(s) 111, 570
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 1 cut(s) 541
NdeII GATC 3 cut(s) 7, 169, 442
NlaIII CATG 2 cut(s) 247, 308
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 331
PagI TCATGA 1 cut(s) 304
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 577, 716
PkrI GCNGC 3 cut(s) 352, 397, 621
PleI GAGTC 4 cut(s) 322, 323, 356, 623
PpsI GAGTC 4 cut(s) 322, 323, 356, 623
Psp6I CCWGG 1 cut(s) 681
PspFI CCCAGC 1 cut(s) 558
PspGI CCWGG 1 cut(s) 681
PspPI GGNCC 2 cut(s) 497, 527
PspXI VCTCGAGB 1 cut(s) 331
PstI CTGCAG 1 cut(s) 621
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 2 cut(s) 86, 643
RsaNI GTAC 2 cut(s) 85, 642
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 2 cut(s) 68, 425
SatI GCNGC 3 cut(s) 351, 396, 620
Sau3AI GATC 3 cut(s) 7, 169, 442
Sau96I GGNCC 2 cut(s) 497, 527
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 4 cut(s) 323, 323, 356, 623
ScrFI CCNGG 1 cut(s) 683
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 617
Sfr274I CTCGAG 1 cut(s) 331
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 101, 331
SmoI CTYRAG 2 cut(s) 101, 331
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 2 cut(s) 111, 570
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 3 cut(s) 317, 332, 489
TasI AATT 2 cut(s) 111, 570
TatI WGTACW 2 cut(s) 84, 641
TfiI GAWTC 2 cut(s) 577, 716
Tru1I TTAA 2 cut(s) 68, 425
Tru9I TTAA 2 cut(s) 68, 425
TscAI CASTG 4 cut(s) 17, 331, 545, 591
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 3 cut(s) 350, 395, 619
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 149, 372
TspRI CASTG 4 cut(s) 17, 331, 545, 591
VpaK11BI GGWCC 1 cut(s) 527
XceI RCATGY 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 645
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.