Rh1CG285900

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016393
Physical Location & Seq
Reverse (-)
55723352 .. 55724595
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG285900.1

Sequence Viewer

Length: 756 bp
ATGGAAGATCAGTGCAGTCCTTTTAGTTGGGATTTTTGCTATCAGGAAGAGGGAATAGAAGCTCAGTTAAGGCATTCTCTTCTGTACACAACCTTGGAGCTTGAGGCAACAATTGTATCAGCAAAGGAGAAGATTTTGAGGAGAGACGAAGAAGTTGTTAATTTCAAAGATCTCCTTACCAGAGTCATCAAAGAGAGAGATGAGGCCAAAGCGAAATGCCAAAGTCTAGTGTTGGAGAAGCTCATGCTCCAACAACAACTGCAAAAACAACAACAACAACAAGTGATTGCTCCTCAAAATCATGAGGTTGAGTCGAAAGGCAGTGACTCGAGCAAGCACTACTTTGCTGCTTCGTCCGACTCCGATGAGAACATCATTTCATCTTCAAATGCAGCAGACCCAGTTATCTCACAAGATGTCTTAACAAAACTATTAGGTGATCAGAAGCCATTGCCAGAGAAAGGGAAGCTATTACAAGCAGTAATCGATGCTGGCCCGCTCCTCCAAAATCTTCTGCTGGCTGGACCTCTGCCTCAGTGGCAACATCCACCTCCCCAGCTGAAGTCAATTGAGATTCCACCAGTAGCTATTTCTCCTCCAACACCACATCTTCTGCAGCCCCAAGACTCTTGCATTAGTACTAGTAGCAACACTACTTGTTTCGGTAACAAAAGAAGCCTGGTGCATAGTGATGGTTCTGGTTCTGGTTCTGATTCTTCACCCAAGACCAAGTATCAAAAGGTTGTTCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

251

Amino Acids

27.81

Weight (kDa)

5.41

Isoelectric Point (pI)

66.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 22 - 248 5.5e-69 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 499
AciI CCGC 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 2 cut(s) 86, 640
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 2 cut(s) 166, 387
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 678
AluBI AGCT 6 cut(s) 62, 100, 241, 469, 559, 587
AluI AGCT 6 cut(s) 62, 100, 241, 469, 559, 587
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 2 cut(s) 204, 493
ApeKI GCWGC 3 cut(s) 347, 392, 616
AspS9I GGNCC 2 cut(s) 494, 524
AsuHPI GGTGA 2 cut(s) 449, 711
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 1 cut(s) 524
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbvI GCAGC 3 cut(s) 334, 404, 628
BccI CCATC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 680
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 2 cut(s) 227, 642
BfmI CTRYAG 1 cut(s) 614
BglI GCCNNNNNGGC 1 cut(s) 538
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 348, 393, 617
BlsI GCNGC 3 cut(s) 349, 394, 618
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 524
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 494, 524
BmrFI CCNGG 1 cut(s) 680
BmrI ACTGGG 1 cut(s) 395
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse1I ACTGG 2 cut(s) 401, 581
Bse3DI GCAATG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 680
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 77, 548
BseNI ACTGG 2 cut(s) 401, 581
BseRI GAGGAG 4 cut(s) 154, 282, 491, 585
BseXI GCAGC 3 cut(s) 334, 404, 628
BseYI CCCAGC 1 cut(s) 555
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 206, 495
BshVI ATCGAT 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 206, 495
BsoBI CYCGRG 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 7, 169, 439
BspACI CCGC 1 cut(s) 497
BspANI GGCC 2 cut(s) 206, 495
BspCNI CTCAG 2 cut(s) 76, 547
BspDI ATCGAT 1 cut(s) 486
BspHI TCATGA 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 618
BsrBI CCGCTC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 2 cut(s) 401, 581
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 7, 169, 439
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 680
Bst6I CTCTTC 2 cut(s) 42, 84
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 335, 493, 497, 519
BstDEI CTNAG 2 cut(s) 63, 534
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 3 cut(s) 10, 172, 442
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 3 cut(s) 7, 169, 439
BstMWI GCNNNNNNNGC 1 cut(s) 538
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 614
BstV1I GCAGC 3 cut(s) 334, 404, 628
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 486
BsuRI GGCC 2 cut(s) 206, 495
BsuTUI ATCGAT 1 cut(s) 486
BtsCI GGATG 1 cut(s) 544
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 17, 328, 542
Cac8I GCNNGC 4 cut(s) 335, 493, 497, 519
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 494, 524
ClaI ATCGAT 1 cut(s) 486
Csp6I GTAC 2 cut(s) 85, 639
CviAII CATG 2 cut(s) 244, 302
CviQI GTAC 2 cut(s) 85, 639
DdeI CTNAG 2 cut(s) 63, 534
DpnI GATC 3 cut(s) 9, 171, 441
DpnII GATC 3 cut(s) 7, 169, 439
Eam1104I CTCTTC 2 cut(s) 42, 84
EarI CTCTTC 2 cut(s) 42, 84
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 247, 305
FaiI YATR 3 cut(s) 245, 303, 687
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 326, 358
FatI CATG 2 cut(s) 243, 301
FauI CCCGC 1 cut(s) 504
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 3 cut(s) 348, 393, 617
FokI GGATG 1 cut(s) 531
Fsp4HI GCNGC 3 cut(s) 348, 393, 617
FspBI CTAG 2 cut(s) 227, 642
GluI GCNGC 3 cut(s) 348, 393, 617
GsaI CCCAGC 1 cut(s) 559
HaeIII GGCC 2 cut(s) 206, 495
Hin1II CATG 2 cut(s) 247, 305
HinfI GANTC 7 cut(s) 183, 311, 326, 359, 574, 626, 713
HphI GGTGA 2 cut(s) 449, 711
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 4 cut(s) 358, 364, 444, 712
Hpy188III TCNNGA 2 cut(s) 44, 302
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 15, 262, 392, 616, 633, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 538
HpyF3I CTNAG 2 cut(s) 63, 534
Hsp92II CATG 2 cut(s) 247, 305
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 7, 169, 439
LmnI GCTCC 4 cut(s) 97, 252, 295, 504
Lsp1109I GCAGC 3 cut(s) 334, 404, 628
LweI GCATC 1 cut(s) 478
MaeI CTAG 2 cut(s) 227, 642
MaeIII GTNAC 2 cut(s) 323, 665
MalI GATC 3 cut(s) 9, 171, 441
MbiI CCGCTC 1 cut(s) 499
MboI GATC 3 cut(s) 7, 169, 439
MboII GAAGA 9 cut(s) 17, 59, 71, 142, 161, 375, 503, 602, 708
MfeI CAATTG 2 cut(s) 111, 567
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 111, 160, 567
MlyI GAGTC 5 cut(s) 192, 320, 320, 353, 620
MmeI TCCRAC 4 cut(s) 213, 274, 381, 623
MseI TTAA 3 cut(s) 68, 159, 422
MslI CAYNNNNRTG 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 680
MunI CAATTG 2 cut(s) 111, 567
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 1 cut(s) 538
NdeII GATC 3 cut(s) 7, 169, 439
NlaIII CATG 2 cut(s) 247, 305
NmuCI GTSAC 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 328
PagI TCATGA 1 cut(s) 301
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 574, 713
PkrI GCNGC 3 cut(s) 349, 394, 618
PleI GAGTC 5 cut(s) 191, 319, 320, 353, 620
PpsI GAGTC 5 cut(s) 191, 319, 320, 353, 620
Psp6I CCWGG 1 cut(s) 678
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 678
PspPI GGNCC 2 cut(s) 494, 524
PspXI VCTCGAGB 1 cut(s) 328
PstI CTGCAG 1 cut(s) 618
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 559
RsaI GTAC 2 cut(s) 86, 640
RsaNI GTAC 2 cut(s) 85, 639
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 3 cut(s) 68, 159, 422
SatI GCNGC 3 cut(s) 348, 393, 617
Sau3AI GATC 3 cut(s) 7, 169, 439
Sau96I GGNCC 2 cut(s) 494, 524
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 5 cut(s) 192, 320, 320, 353, 620
ScrFI CCNGG 1 cut(s) 680
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 614
Sfr274I CTCGAG 1 cut(s) 328
SinI GGWCC 1 cut(s) 524
SlaI CTCGAG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 2 cut(s) 101, 328
SmoI CTYRAG 2 cut(s) 101, 328
SpeI ACTAGT 1 cut(s) 641
Sse9I AATT 3 cut(s) 111, 160, 567
SsiI CCGC 1 cut(s) 497
SspMI CTAG 2 cut(s) 227, 642
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 3 cut(s) 314, 329, 486
TasI AATT 3 cut(s) 111, 160, 567
TatI WGTACW 2 cut(s) 84, 638
TfiI GAWTC 2 cut(s) 574, 713
Tru1I TTAA 3 cut(s) 68, 159, 422
Tru9I TTAA 3 cut(s) 68, 159, 422
TscAI CASTG 3 cut(s) 17, 328, 542
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 3 cut(s) 347, 392, 616
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 3 cut(s) 17, 328, 542
VpaK11BI GGWCC 1 cut(s) 524
XhoI CTCGAG 1 cut(s) 328
XspI CTAG 2 cut(s) 227, 642
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.