Rh1AG304900

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016393
Physical Location & Seq
Reverse (-)
53730814 .. 53732533
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG304900.1

Sequence Viewer

Length: 768 bp
ATGGAAGATCAGTGCAGTCCTTTTAGTTGGGATTTTTGCTATCAGGAAGAGGGAATAGAAGCTCAGTTAAGGCATTCTCTTCTGTACACAACCTTGGAGCTTGAGGCAACAATTGTATCAGCAAAGGAGAAGATTTTGAGGAGAGACGAAGAAGTTGTTAATTTCAAAGATCTCCTTACCAGAGTCATCAAAGAGAGAGATGAGGCCAAAGCGAAATGCCAAAGTCTAGTGTTGGAGAAGCTCATGCTCCAACAACAACTGCAAAAACAACAACAACAACAACAACAAGTGATTGCTCCTCAAAATCATGAGGTTGAGTCGAAAGGCAGTGACTCGAGCAAGCACTACTTTGCTGCTTCGTCCGACTCCGATGAGAACATCATTTCATCTTCAAATGCAGCAGACCCAGTTATCTCACAAGATGTCTTAACAAAACTATTAGGTGATCAGAAGCCCTTGCCAGAGAAAGGGAAGCTCTTACAAGCAGTAATCGATGCTGGCCCGCTCCTCCAAAATCTTCTGCTGGCTGGACCTCTGCCTCAGTGGCAACATCCACCTCCCCAGCTGAAGTCAATTGAGATTCCACCAGTGGCTATTTCTCCTCCAACACCACATCTTCTGCAGCCCCAAGACTCTTGCATTAGTACTAGTAGCAACACTACTTGTTTCGGTAACAAAAGAAGCCTGGTGCATAGTGATGGTTCTGGTTCTGGTTCTGGTTCTGATTCTTCACCCAAGACCAAGTATCAAAAGGTTGTTCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

255

Amino Acids

28.21

Weight (kDa)

5.41

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 22 - 252 5e-68 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 505
AciI CCGC 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 2 cut(s) 86, 646
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 166, 393
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 1 cut(s) 684
AluBI AGCT 5 cut(s) 62, 100, 241, 475, 565
AluI AGCT 5 cut(s) 62, 100, 241, 475, 565
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 2 cut(s) 204, 499
ApeKI GCWGC 3 cut(s) 353, 398, 622
AspS9I GGNCC 2 cut(s) 500, 530
AsuHPI GGTGA 2 cut(s) 455, 723
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 530
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbvI GCAGC 3 cut(s) 340, 410, 634
BccI CCATC 1 cut(s) 692
BciT130I CCWGG 1 cut(s) 686
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 2 cut(s) 227, 648
BfmI CTRYAG 1 cut(s) 620
BglI GCCNNNNNGGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 354, 399, 623
BlsI GCNGC 3 cut(s) 355, 400, 624
BmcAI AGTACT 1 cut(s) 646
Bme1390I CCNGG 1 cut(s) 686
Bme18I GGWCC 1 cut(s) 530
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 500, 530
BmrFI CCNGG 1 cut(s) 686
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 407, 587
BseBI CCWGG 1 cut(s) 686
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 2 cut(s) 77, 554
BseNI ACTGG 2 cut(s) 407, 587
BseRI GAGGAG 4 cut(s) 154, 288, 497, 591
BseXI GCAGC 3 cut(s) 340, 410, 634
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 206, 501
BshVI ATCGAT 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 206, 501
BsoBI CYCGRG 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 7, 169, 445
BspACI CCGC 1 cut(s) 503
BspANI GGCC 2 cut(s) 206, 501
BspCNI CTCAG 2 cut(s) 76, 553
BspDI ATCGAT 1 cut(s) 492
BspHI TCATGA 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 624
BsrBI CCGCTC 1 cut(s) 505
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 2 cut(s) 407, 587
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 7, 169, 445
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 686
Bst6I CTCTTC 2 cut(s) 42, 84
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 341, 499, 503, 525
BstDEI CTNAG 2 cut(s) 63, 540
BstF5I GGATG 1 cut(s) 550
BstKTI GATC 3 cut(s) 10, 172, 448
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 3 cut(s) 7, 169, 445
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 684
BstSFI CTRYAG 1 cut(s) 620
BstV1I GCAGC 3 cut(s) 340, 410, 634
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 492
BsuRI GGCC 2 cut(s) 206, 501
BsuTUI ATCGAT 1 cut(s) 492
BtsCI GGATG 1 cut(s) 550
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 4 cut(s) 17, 334, 548, 594
Cac8I GCNNGC 4 cut(s) 341, 499, 503, 525
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 500, 530
ClaI ATCGAT 1 cut(s) 492
Csp6I GTAC 2 cut(s) 85, 645
CviAII CATG 2 cut(s) 244, 308
CviQI GTAC 2 cut(s) 85, 645
DdeI CTNAG 2 cut(s) 63, 540
DpnI GATC 3 cut(s) 9, 171, 447
DpnII GATC 3 cut(s) 7, 169, 445
Eam1104I CTCTTC 2 cut(s) 42, 84
EarI CTCTTC 2 cut(s) 42, 84
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 247, 311
FaiI YATR 3 cut(s) 245, 309, 693
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 332, 364
FatI CATG 2 cut(s) 243, 307
FauI CCCGC 1 cut(s) 510
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 3 cut(s) 354, 399, 623
FokI GGATG 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 354, 399, 623
FspBI CTAG 2 cut(s) 227, 648
GluI GCNGC 3 cut(s) 354, 399, 623
GsaI CCCAGC 1 cut(s) 565
HaeIII GGCC 2 cut(s) 206, 501
Hin1II CATG 2 cut(s) 247, 311
HinfI GANTC 7 cut(s) 183, 317, 332, 365, 580, 632, 725
HphI GGTGA 2 cut(s) 455, 723
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 4 cut(s) 364, 370, 450, 724
Hpy188III TCNNGA 2 cut(s) 44, 308
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 15, 262, 398, 622, 639, 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 2 cut(s) 63, 540
Hsp92II CATG 2 cut(s) 247, 311
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 3 cut(s) 7, 169, 445
LmnI GCTCC 4 cut(s) 97, 252, 301, 510
Lsp1109I GCAGC 3 cut(s) 340, 410, 634
LweI GCATC 1 cut(s) 484
MaeI CTAG 2 cut(s) 227, 648
MaeIII GTNAC 2 cut(s) 329, 671
MalI GATC 3 cut(s) 9, 171, 447
MbiI CCGCTC 1 cut(s) 505
MboI GATC 3 cut(s) 7, 169, 445
MboII GAAGA 9 cut(s) 17, 59, 71, 142, 161, 381, 509, 608, 720
MfeI CAATTG 2 cut(s) 111, 573
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 111, 160, 573
MlyI GAGTC 5 cut(s) 192, 326, 326, 359, 626
MmeI TCCRAC 4 cut(s) 213, 274, 387, 629
MseI TTAA 3 cut(s) 68, 159, 428
MslI CAYNNNNRTG 1 cut(s) 696
MspA1I CMGCKG 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 686
MunI CAATTG 2 cut(s) 111, 573
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 544
NdeII GATC 3 cut(s) 7, 169, 445
NlaIII CATG 2 cut(s) 247, 311
NmuCI GTSAC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 334
PagI TCATGA 1 cut(s) 307
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 580, 725
PkrI GCNGC 3 cut(s) 355, 400, 624
PleI GAGTC 5 cut(s) 191, 325, 326, 359, 626
PpsI GAGTC 5 cut(s) 191, 325, 326, 359, 626
Psp6I CCWGG 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 1 cut(s) 684
PspPI GGNCC 2 cut(s) 500, 530
PspXI VCTCGAGB 1 cut(s) 334
PstI CTGCAG 1 cut(s) 624
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 565
RsaI GTAC 2 cut(s) 86, 646
RsaNI GTAC 2 cut(s) 85, 645
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 3 cut(s) 68, 159, 428
SatI GCNGC 3 cut(s) 354, 399, 623
Sau3AI GATC 3 cut(s) 7, 169, 445
Sau96I GGNCC 2 cut(s) 500, 530
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 5 cut(s) 192, 326, 326, 359, 626
ScrFI CCNGG 1 cut(s) 686
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 620
Sfr274I CTCGAG 1 cut(s) 334
SinI GGWCC 1 cut(s) 530
SlaI CTCGAG 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 101, 334
SmoI CTYRAG 2 cut(s) 101, 334
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 3 cut(s) 111, 160, 573
SsiI CCGC 1 cut(s) 503
SspMI CTAG 2 cut(s) 227, 648
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 3 cut(s) 320, 335, 492
TasI AATT 3 cut(s) 111, 160, 573
TatI WGTACW 2 cut(s) 84, 644
TfiI GAWTC 2 cut(s) 580, 725
Tru1I TTAA 3 cut(s) 68, 159, 428
Tru9I TTAA 3 cut(s) 68, 159, 428
TscAI CASTG 4 cut(s) 17, 334, 548, 594
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 3 cut(s) 353, 398, 622
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 4 cut(s) 17, 334, 548, 594
VpaK11BI GGWCC 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 334
XspI CTAG 2 cut(s) 227, 648
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.