RchiOBHm_Chr1g0362191

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016393
Physical Location & Seq
Reverse (-)
53875180 .. 53876278
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58702

Sequence Viewer

Length: 771 bp
ATGGAAGATCAGTGCAGTCCTTTTAGTTGGGATTTTTGCTATCAGGAAGAGGGAATAGAAGATCAGTTAAGGCATTCTCTTTTGTACACAACCTTGGAGCTTGAGGCAACAATTGTATCAGCAAAGGAGAAGATTTTGAGGAGAGACGAAGAAGTTGTTCATTTCCAAGATCTCCTTACCAGAGTCCTCAAAGAGAGAGATGAGGCCAGAGCCAAATGCCGAAGTCTAGTGTTGGAGAAGCACATGCTCCAACAACAACTGCAAAAACAACAACAACAACAACAACAGCAACAAGAACAACAAGTGATTGCTCCTCAAAATCATGAGGTTGAGTCGAAAGGCAGTGACTCGAGCAAGCACTACTTTGCTGCTTCGTCCGACTCCGATGAGAACATCATTTCATCTTCAAATGCAGCAGACCCAGTTATCTCACAAGATATCTTAACAAAACTATTAGGTGATCAGAAGCCATTGCCAGAGAAAGGGAAGCTATTACAAGCAGTAATCGATGCTGGCCCGCTCCTCCAAAATCTTCTGCTGGCTGGACCTCTGCCTCAGTGGCAACATCCACCTCCCCAGCTGAAGTCAATTGAGATTCCACCAGTGGCTATTTCTCCTCCAACACCACATCTTCTGCAGCCCCAAGACTCTTGCATTAGTACTAGTAGCAACACTACTTGTTTCGGTAACAAAAGAAGCCTGGTGCATAGTGATGGTTCTGGTTCTGATTCTTCACCCAAGACCAAGTATCAAAAGGTTGTTCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

256

Amino Acids

28.73

Weight (kDa)

5.38

Isoelectric Point (pI)

73.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 21 - 253 1.6e-67 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 520
AciI CCGC 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 2 cut(s) 86, 661
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 1 cut(s) 408
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 3 cut(s) 100, 490, 580
AluI AGCT 3 cut(s) 100, 490, 580
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 2 cut(s) 204, 514
ApeKI GCWGC 3 cut(s) 368, 413, 637
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 515, 545
AsuHPI GGTGA 2 cut(s) 470, 726
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 1 cut(s) 545
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbvI GCAGC 3 cut(s) 355, 425, 649
BccI CCATC 1 cut(s) 707
BciT130I CCWGG 1 cut(s) 701
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 2 cut(s) 227, 663
BfmI CTRYAG 1 cut(s) 635
BglI GCCNNNNNGGC 1 cut(s) 559
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 369, 414, 638
BlsI GCNGC 3 cut(s) 370, 415, 639
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 1 cut(s) 701
Bme18I GGWCC 1 cut(s) 545
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 515, 545
BmrFI CCNGG 1 cut(s) 701
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 422, 602
Bse3DI GCAATG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 701
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 1 cut(s) 569
BseNI ACTGG 2 cut(s) 422, 602
BseRI GAGGAG 4 cut(s) 154, 303, 512, 606
BseXI GCAGC 3 cut(s) 355, 425, 649
BseYI CCCAGC 1 cut(s) 576
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 206, 516
BshVI ATCGAT 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 206, 516
BsoBI CYCGRG 1 cut(s) 349
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 4 cut(s) 7, 61, 169, 460
BspACI CCGC 1 cut(s) 518
BspANI GGCC 2 cut(s) 206, 516
BspCNI CTCAG 1 cut(s) 568
BspDI ATCGAT 1 cut(s) 507
BspHI TCATGA 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 639
BsrBI CCGCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 470
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 2 cut(s) 422, 602
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 4 cut(s) 7, 61, 169, 460
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 356, 514, 518, 540
BstDEI CTNAG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 565
BstKTI GATC 4 cut(s) 10, 64, 172, 463
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 7, 61, 169, 460
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 699
BstSFI CTRYAG 1 cut(s) 635
BstV1I GCAGC 3 cut(s) 355, 425, 649
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 2 cut(s) 206, 516
BsuTUI ATCGAT 1 cut(s) 507
BtsCI GGATG 1 cut(s) 565
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 4 cut(s) 17, 349, 563, 609
Cac8I GCNNGC 4 cut(s) 356, 514, 518, 540
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 515, 545
ClaI ATCGAT 1 cut(s) 507
Csp6I GTAC 2 cut(s) 85, 660
CviAII CATG 2 cut(s) 244, 323
CviQI GTAC 2 cut(s) 85, 660
DdeI CTNAG 1 cut(s) 555
DpnI GATC 4 cut(s) 9, 63, 171, 462
DpnII GATC 4 cut(s) 7, 61, 169, 460
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 93
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 602
Eco88I CYCGRG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 699
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 247, 326
FaiI YATR 3 cut(s) 245, 324, 708
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 347, 379
FatI CATG 2 cut(s) 243, 322
FauI CCCGC 1 cut(s) 525
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 369, 414, 638
FokI GGATG 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 369, 414, 638
FspBI CTAG 2 cut(s) 227, 663
GluI GCNGC 3 cut(s) 369, 414, 638
GsaI CCCAGC 1 cut(s) 580
HaeIII GGCC 2 cut(s) 206, 516
Hin1II CATG 2 cut(s) 247, 326
HinfI GANTC 7 cut(s) 183, 332, 347, 380, 595, 647, 728
HphI GGTGA 2 cut(s) 470, 726
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 4 cut(s) 379, 385, 465, 727
Hpy188III TCNNGA 2 cut(s) 44, 323
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 15, 262, 413, 637, 654, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 1 cut(s) 555
Hsp92II CATG 2 cut(s) 247, 326
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 7, 61, 169, 460
LmnI GCTCC 4 cut(s) 97, 252, 316, 525
Lsp1109I GCAGC 3 cut(s) 355, 425, 649
LweI GCATC 1 cut(s) 499
MaeI CTAG 2 cut(s) 227, 663
MaeIII GTNAC 2 cut(s) 344, 686
MalI GATC 4 cut(s) 9, 63, 171, 462
MbiI CCGCTC 1 cut(s) 520
MboI GATC 4 cut(s) 7, 61, 169, 460
MboII GAAGA 9 cut(s) 17, 59, 71, 142, 161, 396, 524, 623, 723
MfeI CAATTG 2 cut(s) 111, 588
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 111, 588
MlyI GAGTC 5 cut(s) 192, 341, 341, 374, 641
MmeI TCCRAC 4 cut(s) 213, 274, 402, 644
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 68, 443
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 580
MspR9I CCNGG 1 cut(s) 701
MunI CAATTG 2 cut(s) 111, 588
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 701
MwoI GCNNNNNNNGC 1 cut(s) 559
NdeII GATC 4 cut(s) 7, 61, 169, 460
NlaIII CATG 2 cut(s) 247, 326
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 349
PagI TCATGA 1 cut(s) 322
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 595, 728
PkrI GCNGC 3 cut(s) 370, 415, 639
PleI GAGTC 5 cut(s) 191, 340, 341, 374, 641
PpsI GAGTC 5 cut(s) 191, 340, 341, 374, 641
Psp6I CCWGG 1 cut(s) 699
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 1 cut(s) 699
PspPI GGNCC 2 cut(s) 515, 545
PspXI VCTCGAGB 1 cut(s) 349
PstI CTGCAG 1 cut(s) 639
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 580
RsaI GTAC 2 cut(s) 86, 661
RsaNI GTAC 2 cut(s) 85, 660
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 2 cut(s) 68, 443
SatI GCNGC 3 cut(s) 369, 414, 638
Sau3AI GATC 4 cut(s) 7, 61, 169, 460
Sau96I GGNCC 2 cut(s) 515, 545
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 5 cut(s) 192, 341, 341, 374, 641
ScrFI CCNGG 1 cut(s) 701
SetI ASST 9 cut(s) 95, 102, 330, 460, 492, 550, 574, 582, 759
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 635
Sfr274I CTCGAG 1 cut(s) 349
SinI GGWCC 1 cut(s) 545
SlaI CTCGAG 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 2 cut(s) 101, 349
SmoI CTYRAG 2 cut(s) 101, 349
SpeI ACTAGT 1 cut(s) 662
Sse9I AATT 2 cut(s) 111, 588
SsiI CCGC 1 cut(s) 518
SspMI CTAG 2 cut(s) 227, 663
StyD4I CCNGG 1 cut(s) 699
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 3 cut(s) 335, 350, 507
TasI AATT 2 cut(s) 111, 588
TatI WGTACW 2 cut(s) 84, 659
TfiI GAWTC 2 cut(s) 595, 728
Tru1I TTAA 2 cut(s) 68, 443
Tru9I TTAA 2 cut(s) 68, 443
TscAI CASTG 4 cut(s) 17, 349, 563, 609
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 3 cut(s) 368, 413, 637
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 149, 390
TspRI CASTG 4 cut(s) 17, 349, 563, 609
VpaK11BI GGWCC 1 cut(s) 545
XceI RCATGY 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 227, 663
ZrmI AGTACT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.