Rorug01G0295300

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016393
Physical Location & Seq
Forward (+)
41096347 .. 41098161
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0295300.1

Sequence Viewer

Length: 996 bp
ATGGAAGACGATTGGGATCTCACCGCCGTGGTCAGAGGCTGCTCCACCGCCCCAACCACCACCACCACCACCAACAAGCCAACCAACGCTTTCATCACAGACCACTTCCACACAAGCCCTCTCCTGTCTTCATTTGGTCAACAGGGTTTTGTCTCCAACAACAACACTCAAACCTTCTCTGTTCTTCCTCTCCCTCCAGATCCCATTAAACCCACAAGTGCAATTGAGGAACTGCATGATCTTTACAAGCCATTCTTCCCCAAATCTCACCAAACCCCTTCTCTTCTTTCTCCACCCCCACAAATCACACCACAGCCCACTTTCTCTTCCCCTCAACCTCTCCACAGACACCAACAACATCAGCCTAAGCTTTCTGCTACTAATCCCCAGCGCTCCAAAAAGAGAAAGAACCAGCTTAAGAAGGTGTGCCAAGTACCAGCGGAGTCTTTGTCTTCTGATGTGTGGGCATGGCGTAAATACGGACAGAAACCCATCAAGGGCTCACCATATCCGAGAGGTTACTACAGATGCAGCAGCTCAAAGGGTTGTATGGCCCGGAAGCAAGTGGAGCGGAACAGATCCGACCCGGGAATGTTCATAGTCACCTACACGGCGGAGCACAACCACCCTGCACCGACTCACCGCAACTCGCTTGCTGGGTCCACGCGTCACAAGCCTGTCTCTTCTCCCCAGTCGGGTTCCGTCACGGGCGGTGACAATACCAAACCCAAGGGCTGCTCTCCGTCGCCGGCCACGTCGGCGGAGGAGGAGCTTGGTCGGAGCACAACAAGGATGGAAGCGAAAGAAGAAAAACAGAGTCCTATGGCGGATGAAGACGAAACAGAGTACTTTGGGGTGTGTGATACGATTGTGAGCGATGATTTCTTTGTGGGTTTGGAAGGTCTCGCCGGAGATTACTTTTCCGATCATTTTACGGTCAGCTTCGGCGGCCCATGGAGTTCTGGTAATGCTGCCACCGCCGCCAGTAGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

331

Amino Acids

36.26

Weight (kDa)

8.16

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 153 - 210 1.1e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 571
AccII CGCG 1 cut(s) 667
AclWI GGATC 3 cut(s) 24, 194, 573
AcoI YGGCCR 1 cut(s) 750
AfaI GTAC 2 cut(s) 435, 848
AfeI AGCGCT 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 497, 695
AflII CTTAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 665
AjiI CACGTC 1 cut(s) 756
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 5 cut(s) 370, 415, 537, 772, 942
AluI AGCT 5 cut(s) 370, 415, 537, 772, 942
Alw21I GWGCWC 2 cut(s) 621, 785
Alw26I GTCTC 3 cut(s) 157, 685, 908
AlwI GGATC 3 cut(s) 24, 194, 573
AlwNI CAGNNNCTG 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 586
Aor51HI AGCGCT 1 cut(s) 392
AoxI GGCC 3 cut(s) 552, 750, 949
ApeKI GCWGC 5 cut(s) 39, 531, 534, 735, 971
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 3 cut(s) 553, 660, 950
AsuC2I CCSGG 3 cut(s) 556, 587, 588
AsuHPI GGTGA 6 cut(s) 13, 260, 495, 595, 632, 725
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 1 cut(s) 660
BaeI ACNNNNGTAYC 2 cut(s) 855, 888
BanII GRGCYC 1 cut(s) 503
BbsI GAAGAC 4 cut(s) 12, 120, 444, 840
Bbv12I GWGCWC 2 cut(s) 621, 785
BbvI GCAGC 5 cut(s) 26, 543, 546, 722, 958
BccI CCATC 2 cut(s) 500, 787
BceAI ACGGC 2 cut(s) 11, 627
BcnI CCSGG 3 cut(s) 556, 587, 588
BcoDI GTCTC 3 cut(s) 157, 685, 908
BfmI CTRYAG 1 cut(s) 523
BfoI RGCGCY 1 cut(s) 394
BfrI CTTAAG 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 758
BisI GCNGC 7 cut(s) 40, 532, 535, 736, 949, 972, 981
BlsI GCNGC 7 cut(s) 41, 533, 536, 737, 950, 973, 982
BmcAI AGTACT 1 cut(s) 848
Bme1390I CCNGG 3 cut(s) 556, 587, 588
Bme18I GGWCC 1 cut(s) 660
BmeT110I CYCGRG 1 cut(s) 586
BmgBI CACGTC 1 cut(s) 756
BmgT120I GGNCC 3 cut(s) 553, 660, 950
BmiI GGNNCC 2 cut(s) 661, 700
BmrFI CCNGG 3 cut(s) 556, 587, 588
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 4 cut(s) 12, 120, 444, 840
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 366
BpuMI CCSGG 3 cut(s) 556, 587, 588
BsaBI GATNNNNATC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 4 cut(s) 27, 586, 729, 953
BsaXI ACNNNNNCTCC 4 cut(s) 434, 464, 949, 979
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 695
Bse118I RCCGGY 1 cut(s) 748
Bse1I ACTGG 2 cut(s) 691, 984
Bse8I GATNNNNATC 1 cut(s) 15
BseDI CCNNGG 4 cut(s) 27, 586, 729, 953
BseGI GGATG 2 cut(s) 798, 835
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 497, 695
BseNI ACTGG 2 cut(s) 691, 984
BseRI GAGGAG 2 cut(s) 779, 782
BseXI GCAGC 5 cut(s) 26, 543, 546, 722, 958
BseYI CCCAGC 2 cut(s) 387, 656
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 667
BshFI GGCC 3 cut(s) 554, 752, 951
BsiHKAI GWGCWC 2 cut(s) 621, 785
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 4 cut(s) 556, 587, 749, 909
BslI CCNNNNNNNGG 2 cut(s) 497, 695
BsmAI GTCTC 3 cut(s) 157, 685, 908
BsnI GGCC 3 cut(s) 554, 752, 951
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 1 cut(s) 586
Bsp1286I GDGCHC 3 cut(s) 503, 621, 785
Bsp143I GATC 5 cut(s) 16, 199, 238, 578, 925
Bsp19I CCATGG 1 cut(s) 953
BspANI GGCC 3 cut(s) 554, 752, 951
BspFNI CGCG 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 661, 700
BspPI GGATC 3 cut(s) 24, 194, 573
BspTI CTTAAG 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 908
BsrBI CCGCTC 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 748
BsrI ACTGG 2 cut(s) 691, 984
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 4 cut(s) 27, 586, 729, 953
BssMI GATC 5 cut(s) 16, 199, 238, 578, 925
BssT1I CCWWGG 2 cut(s) 729, 953
Bst4CI ACNGT 1 cut(s) 937
Bst6I CTCTTC 3 cut(s) 288, 331, 688
BstAFI CTTAAG 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 654, 750
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 2 cut(s) 27, 953
BstF5I GGATG 2 cut(s) 798, 835
BstFNI CGCG 1 cut(s) 667
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 5 cut(s) 19, 202, 241, 581, 928
BstMAI GTCTC 3 cut(s) 157, 685, 908
BstMBI GATC 5 cut(s) 16, 199, 238, 578, 925
BstMWI GCNNNNNNNGC 6 cut(s) 568, 673, 758, 948, 977, 980
BstSCI CCNGG 3 cut(s) 554, 585, 586
BstSFI CTRYAG 1 cut(s) 523
BstUI CGCG 1 cut(s) 667
BstV1I GCAGC 5 cut(s) 26, 543, 546, 722, 958
BstV2I GAAGAC 4 cut(s) 12, 120, 444, 840
BstX2I RGATCY 3 cut(s) 16, 199, 578
BstYI RGATCY 3 cut(s) 16, 199, 578
BsuRI GGCC 3 cut(s) 554, 752, 951
BtgI CCRYGG 2 cut(s) 27, 953
BtgZI GCGATG 1 cut(s) 891
BtrI CACGTC 1 cut(s) 756
BtsCI GGATG 2 cut(s) 798, 835
Cac8I GCNNGC 2 cut(s) 654, 750
CaiI CAGNNNCTG 1 cut(s) 39
CfoI GCGC 1 cut(s) 393
Cfr10I RCCGGY 1 cut(s) 748
Cfr13I GGNCC 3 cut(s) 553, 660, 950
Cfr9I CCCGGG 1 cut(s) 586
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 434, 847
CviAII CATG 3 cut(s) 236, 468, 954
CviQI GTAC 2 cut(s) 434, 847
DdeI CTNAG 1 cut(s) 366
DpnI GATC 5 cut(s) 18, 201, 240, 580, 927
DpnII GATC 5 cut(s) 16, 199, 238, 578, 925
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 3 cut(s) 288, 331, 688
EarI CTCTTC 3 cut(s) 288, 331, 688
EciI GGCGGA 3 cut(s) 629, 776, 842
Eco130I CCWWGG 2 cut(s) 729, 953
Eco24I GRGCYC 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 1 cut(s) 660
Eco47III AGCGCT 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 729, 953
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 2 cut(s) 729, 953
FaeI CATG 3 cut(s) 239, 471, 957
FaiI YATR 7 cut(s) 237, 469, 508, 551, 599, 824, 955
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 3 cut(s) 235, 467, 953
Fnu4HI GCNGC 7 cut(s) 40, 532, 535, 736, 949, 972, 981
FokI GGATG 2 cut(s) 805, 842
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 7 cut(s) 40, 532, 535, 736, 949, 972, 981
GlaI GCGC 1 cut(s) 392
GluI GCNGC 7 cut(s) 40, 532, 535, 736, 949, 972, 981
GsaI CCCAGC 2 cut(s) 391, 660
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 3 cut(s) 554, 752, 951
HapII CCGG 4 cut(s) 556, 587, 749, 909
HgaI GACGC 1 cut(s) 656
HhaI GCGC 1 cut(s) 393
Hin1II CATG 3 cut(s) 239, 471, 957
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 443, 637, 817
HpaII CCGG 4 cut(s) 556, 587, 749, 909
HphI GGTGA 6 cut(s) 13, 260, 495, 595, 632, 725
Hpy166II GTNNAC 2 cut(s) 140, 663
Hpy188I TCNGA 7 cut(s) 35, 457, 513, 583, 780, 925, 995
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 140, 663
Hpy99I CGWCG 2 cut(s) 748, 760
HpyAV CCTTC 4 cut(s) 184, 288, 415, 893
HpyCH4III ACNGT 1 cut(s) 937
HpyCH4IV ACGT 1 cut(s) 755
HpyCH4V TGCA 4 cut(s) 221, 235, 531, 632
HpyF10VI GCNNNNNNNGC 6 cut(s) 568, 673, 758, 948, 977, 980
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 755
Hsp92II CATG 3 cut(s) 239, 471, 957
HspAI GCGC 1 cut(s) 391
KroI GCCGGC 1 cut(s) 748
KroNI GCCGGC 1 cut(s) 750
Kzo9I GATC 5 cut(s) 16, 199, 238, 578, 925
LmnI GCTCC 6 cut(s) 47, 398, 568, 616, 769, 780
Lsp1109I GCAGC 5 cut(s) 26, 543, 546, 722, 958
LweI GCATC 1 cut(s) 518
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 5 cut(s) 518, 601, 668, 703, 713
MalI GATC 5 cut(s) 18, 201, 240, 580, 927
MbiI CCGCTC 1 cut(s) 571
MboI GATC 5 cut(s) 16, 199, 238, 578, 925
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 3 cut(s) 16, 199, 578
MhlI GDGCHC 3 cut(s) 503, 621, 785
MluCI AATT 1 cut(s) 222
MluI ACGCGT 1 cut(s) 665
MlyI GAGTC 3 cut(s) 452, 631, 826
MmeI TCCRAC 3 cut(s) 180, 606, 758
MroNI GCCGGC 1 cut(s) 748
MseI TTAA 2 cut(s) 207, 417
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 440
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 4 cut(s) 556, 587, 749, 909
MspR9I CCNGG 3 cut(s) 556, 587, 588
MunI CAATTG 1 cut(s) 222
MvnI CGCG 1 cut(s) 667
MwoI GCNNNNNNNGC 6 cut(s) 568, 673, 758, 948, 977, 980
NaeI GCCGGC 1 cut(s) 750
NciI CCSGG 3 cut(s) 556, 587, 588
NcoI CCATGG 1 cut(s) 953
NdeII GATC 5 cut(s) 16, 199, 238, 578, 925
NgoMIV GCCGGC 1 cut(s) 748
NlaIII CATG 3 cut(s) 239, 471, 957
NlaIV GGNNCC 2 cut(s) 661, 700
NmuCI GTSAC 4 cut(s) 601, 668, 703, 713
OliI CACNNNNGTG 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PdiI GCCGGC 1 cut(s) 750
PkrI GCNGC 7 cut(s) 41, 533, 536, 737, 950, 973, 982
PleI GAGTC 3 cut(s) 451, 631, 825
PpsI GAGTC 3 cut(s) 451, 631, 825
PspFI CCCAGC 2 cut(s) 387, 656
PspN4I GGNNCC 2 cut(s) 661, 700
PspPI GGNCC 3 cut(s) 553, 660, 950
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 3 cut(s) 16, 199, 578
RsaI GTAC 2 cut(s) 435, 848
RsaNI GTAC 2 cut(s) 434, 847
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 207, 417
SatI GCNGC 7 cut(s) 40, 532, 535, 736, 949, 972, 981
Sau3AI GATC 5 cut(s) 16, 199, 238, 578, 925
Sau96I GGNCC 3 cut(s) 553, 660, 950
ScaI AGTACT 1 cut(s) 848
SchI GAGTC 3 cut(s) 452, 631, 826
ScrFI CCNGG 3 cut(s) 556, 587, 588
SduI GDGCHC 3 cut(s) 503, 621, 785
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 523
SinI GGWCC 1 cut(s) 660
SmaI CCCGGG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 554, 585, 586
StyI CCWWGG 2 cut(s) 729, 953
TaaI ACNGT 1 cut(s) 937
TaiI ACGT 1 cut(s) 758
TasI AATT 1 cut(s) 222
TatI WGTACW 1 cut(s) 846
TauI GCSGC 2 cut(s) 951, 983
Tru1I TTAA 2 cut(s) 207, 417
Tru9I TTAA 2 cut(s) 207, 417
TseFI GTSAC 4 cut(s) 601, 668, 703, 713
TseI GCWGC 5 cut(s) 39, 531, 534, 735, 971
Tsp45I GTSAC 4 cut(s) 601, 668, 703, 713
TspDTI ATGAA 4 cut(s) 82, 120, 586, 846
TspGWI ACGGA 3 cut(s) 495, 691, 732
TspMI CCCGGG 1 cut(s) 586
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 660
XmaI CCCGGG 1 cut(s) 586
ZrmI AGTACT 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.