Rh1DG297700

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016393
Physical Location & Seq
Reverse (-)
52342318 .. 52344015
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG297700.1

Sequence Viewer

Length: 753 bp
ATGGAAGATCAGTGCAGTCCTTTTAGTTGGGATTTTTGCTATCAGGAAGAGGGAATAGAAGCTCAGTTAAGGCATTCTCTTCTGTACACAACCTTGGAGCTTGAGGCAACAATTGTATCAGCCAAGGAGAAGATTTTGAGGAGAGACGAAGAAGTTGTTAATTTCAAAGATCTCCTTACCAGAGTCATCAAAGAGAGAGATGAGGCCAAAGCGAAATGCCAAAGTCTAGTGTTGGAGAAGCTCATGCTCCAACAACAACTGCAAAAACAACAACAACAAGTGATTGCTCCTCAAAATCATGAGGTTGAGTCGAAAGGCAGTGACTCGAGCAAGCACTACTTTGCTGCTTCGTCCGACTCCGATGAGAACATCATTTCATCTTCAAATGCAGCAGACCCAGTTATCTCACAAGATGTCTTAACAAAACTATTAGGTGATCAGAAGCCATTGCCAGAGAAAGGGAAGCTATTACAAGCAGTAATCGATGCTGGCCCGCTCCTCCAAAATCTTCTGCTGGCTGGACCTCTGCCTCAGTGGCAACATCCACCTCCCCAGCTGAAGTCAATTGAGATTCCACCAGTGGCTATTTCTCCTCCAACACCACATCTTCTGCAGCCCCAAGACTCTTGCATTAGTACTAGTAGCAACACTACTTGTTTCGGTAACAAAAGAAGCCTGGTGCATAGTGATGGTTCTGGTTCTGGTTCTGATTCTTCACCCAAGACCAAGTATCAAAAGGTTGTTCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

250

Amino Acids

27.69

Weight (kDa)

5.41

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 22 - 247 1.7e-68 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 2 cut(s) 86, 637
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 2 cut(s) 166, 384
AhlI ACTAGT 1 cut(s) 638
AjnI CCWGG 1 cut(s) 675
AluBI AGCT 5 cut(s) 62, 100, 241, 466, 556
AluI AGCT 5 cut(s) 62, 100, 241, 466, 556
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 2 cut(s) 204, 490
ApeKI GCWGC 3 cut(s) 344, 389, 613
AspS9I GGNCC 2 cut(s) 491, 521
AsuHPI GGTGA 2 cut(s) 446, 708
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 1 cut(s) 521
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbvI GCAGC 3 cut(s) 331, 401, 625
BccI CCATC 1 cut(s) 683
BciT130I CCWGG 1 cut(s) 677
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 2 cut(s) 227, 639
BfmI CTRYAG 1 cut(s) 611
BglI GCCNNNNNGGC 1 cut(s) 535
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 345, 390, 614
BlsI GCNGC 3 cut(s) 346, 391, 615
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 521
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 491, 521
BmrFI CCNGG 1 cut(s) 677
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 1 cut(s) 475
BmuI ACTGGG 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 2 cut(s) 398, 578
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 1 cut(s) 677
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 93, 123
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 77, 545
BseNI ACTGG 2 cut(s) 398, 578
BseRI GAGGAG 4 cut(s) 154, 279, 488, 582
BseXI GCAGC 3 cut(s) 331, 401, 625
BseYI CCCAGC 1 cut(s) 552
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 206, 492
BshVI ATCGAT 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 206, 492
BsoBI CYCGRG 1 cut(s) 325
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 7, 169, 436
BspACI CCGC 1 cut(s) 494
BspANI GGCC 2 cut(s) 206, 492
BspCNI CTCAG 2 cut(s) 76, 544
BspDI ATCGAT 1 cut(s) 483
BspHI TCATGA 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 615
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 2 cut(s) 398, 578
BssECI CCNNGG 2 cut(s) 93, 123
BssMI GATC 3 cut(s) 7, 169, 436
BssT1I CCWWGG 2 cut(s) 93, 123
Bst2UI CCWGG 1 cut(s) 677
Bst6I CTCTTC 2 cut(s) 42, 84
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 332, 490, 494, 516
BstDEI CTNAG 2 cut(s) 63, 531
BstF5I GGATG 1 cut(s) 541
BstKTI GATC 3 cut(s) 10, 172, 439
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 3 cut(s) 7, 169, 436
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 675
BstSFI CTRYAG 1 cut(s) 611
BstV1I GCAGC 3 cut(s) 331, 401, 625
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 483
BsuRI GGCC 2 cut(s) 206, 492
BsuTUI ATCGAT 1 cut(s) 483
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 4 cut(s) 17, 325, 539, 585
Cac8I GCNNGC 4 cut(s) 332, 490, 494, 516
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 491, 521
ClaI ATCGAT 1 cut(s) 483
Csp6I GTAC 2 cut(s) 85, 636
CviAII CATG 2 cut(s) 244, 299
CviQI GTAC 2 cut(s) 85, 636
DdeI CTNAG 2 cut(s) 63, 531
DpnI GATC 3 cut(s) 9, 171, 438
DpnII GATC 3 cut(s) 7, 169, 436
Eam1104I CTCTTC 2 cut(s) 42, 84
EarI CTCTTC 2 cut(s) 42, 84
Eco130I CCWWGG 2 cut(s) 93, 123
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 578
Eco88I CYCGRG 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 675
EcoT14I CCWWGG 2 cut(s) 93, 123
ErhI CCWWGG 2 cut(s) 93, 123
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 247, 302
FaiI YATR 3 cut(s) 245, 300, 684
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 323, 355
FatI CATG 2 cut(s) 243, 298
FauI CCCGC 1 cut(s) 501
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 345, 390, 614
FokI GGATG 1 cut(s) 528
Fsp4HI GCNGC 3 cut(s) 345, 390, 614
FspBI CTAG 2 cut(s) 227, 639
GluI GCNGC 3 cut(s) 345, 390, 614
GsaI CCCAGC 1 cut(s) 556
HaeIII GGCC 2 cut(s) 206, 492
Hin1II CATG 2 cut(s) 247, 302
HinfI GANTC 7 cut(s) 183, 308, 323, 356, 571, 623, 710
HphI GGTGA 2 cut(s) 446, 708
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 4 cut(s) 355, 361, 441, 709
Hpy188III TCNNGA 2 cut(s) 44, 299
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 15, 262, 389, 613, 630, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 2 cut(s) 63, 531
Hsp92II CATG 2 cut(s) 247, 302
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 3 cut(s) 7, 169, 436
LmnI GCTCC 4 cut(s) 97, 252, 292, 501
Lsp1109I GCAGC 3 cut(s) 331, 401, 625
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 227, 639
MaeIII GTNAC 2 cut(s) 320, 662
MalI GATC 3 cut(s) 9, 171, 438
MbiI CCGCTC 1 cut(s) 496
MboI GATC 3 cut(s) 7, 169, 436
MboII GAAGA 9 cut(s) 17, 59, 71, 142, 161, 372, 500, 599, 705
MfeI CAATTG 2 cut(s) 111, 564
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 111, 160, 564
MlyI GAGTC 5 cut(s) 192, 317, 317, 350, 617
MmeI TCCRAC 4 cut(s) 213, 274, 378, 620
MseI TTAA 3 cut(s) 68, 159, 419
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 556
MspR9I CCNGG 1 cut(s) 677
MunI CAATTG 2 cut(s) 111, 564
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 677
MwoI GCNNNNNNNGC 1 cut(s) 535
NdeII GATC 3 cut(s) 7, 169, 436
NlaIII CATG 2 cut(s) 247, 302
NmuCI GTSAC 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 325
PagI TCATGA 1 cut(s) 298
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 571, 710
PkrI GCNGC 3 cut(s) 346, 391, 615
PleI GAGTC 5 cut(s) 191, 316, 317, 350, 617
PpsI GAGTC 5 cut(s) 191, 316, 317, 350, 617
Psp6I CCWGG 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 552
PspGI CCWGG 1 cut(s) 675
PspPI GGNCC 2 cut(s) 491, 521
PspXI VCTCGAGB 1 cut(s) 325
PstI CTGCAG 1 cut(s) 615
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 556
RsaI GTAC 2 cut(s) 86, 637
RsaNI GTAC 2 cut(s) 85, 636
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 3 cut(s) 68, 159, 419
SatI GCNGC 3 cut(s) 345, 390, 614
Sau3AI GATC 3 cut(s) 7, 169, 436
Sau96I GGNCC 2 cut(s) 491, 521
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 5 cut(s) 192, 317, 317, 350, 617
ScrFI CCNGG 1 cut(s) 677
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 611
Sfr274I CTCGAG 1 cut(s) 325
SinI GGWCC 1 cut(s) 521
SlaI CTCGAG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 2 cut(s) 101, 325
SmoI CTYRAG 2 cut(s) 101, 325
SpeI ACTAGT 1 cut(s) 638
Sse9I AATT 3 cut(s) 111, 160, 564
SsiI CCGC 1 cut(s) 494
SspMI CTAG 2 cut(s) 227, 639
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 2 cut(s) 93, 123
TaqI TCGA 3 cut(s) 311, 326, 483
TasI AATT 3 cut(s) 111, 160, 564
TatI WGTACW 2 cut(s) 84, 635
TfiI GAWTC 2 cut(s) 571, 710
Tru1I TTAA 3 cut(s) 68, 159, 419
Tru9I TTAA 3 cut(s) 68, 159, 419
TscAI CASTG 4 cut(s) 17, 325, 539, 585
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 344, 389, 613
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 4 cut(s) 17, 325, 539, 585
VpaK11BI GGWCC 1 cut(s) 521
XhoI CTCGAG 1 cut(s) 325
XspI CTAG 2 cut(s) 227, 639
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.