MD07G1167100.v1.1

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016393
Physical Location & Seq
Reverse (-)
24168725 .. 24169689
965 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1167100.v1.1.491

Sequence Viewer

Length: 741 bp
ATGGAGGTTCAGTGTAGCCCTTTTAGTTGGGAATTCTTCTATCAGGAAGAGGGGATAGAAGAGCTAAGGCATTCTCTTTTGTGCACAACTTTGGAGCTTGAGGCAACAATTTTATCAGCAAAGGAGAAGATTTCAACAAGAGAAGAAGAAATTGTTCGTCTCAAAGATCTCCTCAGCAAAGCCCTCCAAGAGAGAAATGAAGCTGAAGCAAAATGCCAAACCCTAGTTTTGGACAAACTCGTGCTCCAACAAGAGCTACGGAAGCAGCAACAAAAAGATGAGGATAATGAATCAAAAGGCAGTCAATCTAACAAACACTTAACCTCTTCTGACTCCGAAGAAACCATTGTTCCATCTCCGAATTCAGACCCTATTATGATGCCGCCGGCACCATTGTCATCACCGCCGCCACTGCCACTGGCTGCTTTGAAATTGGGAGCTATGAAGCCGTTGCCGGAAAAAGGGAGGCTACTTCAAGCAGTGATTGAAGCCGGACCGCTGCTTCAAACCCTTCTCCTGGCTGGACCGCTGCCTCAGTGGGAGCACCCTCCTCCCCAACTAAAGTACATTGAGATTCCACCGGTTGCCATTTCTCCTCCACCACGGCGACTTCAACACCATGACTCTTGCAATTGTAGCGGTACTAGTTGTTTCGGTCACAAGAGAAGTTTGGTAAGCTCTGATGATTCTGGTTCTGATTCATCACCCAACACCAAGCGCCGAAAGCTTGTTCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

247

Amino Acids

27.37

Weight (kDa)

5.71

Isoelectric Point (pI)

85.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 18 - 242 1.8e-68 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AciI CCGC 6 cut(s) 383, 404, 407, 497, 527, 639
AcsI RAATTY 2 cut(s) 32, 361
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 2 cut(s) 566, 643
AfiI CCNNNNNNNGG 3 cut(s) 229, 461, 517
AgeI ACCGGT 1 cut(s) 580
AgsI TTSAA 6 cut(s) 135, 430, 476, 488, 506, 614
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 1 cut(s) 516
AluBI AGCT 7 cut(s) 64, 97, 203, 256, 440, 678, 727
AluI AGCT 7 cut(s) 64, 97, 203, 256, 440, 678, 727
Alw21I GWGCWC 3 cut(s) 86, 246, 546
Alw26I GTCTC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 82
ApaLI GTGCAC 1 cut(s) 82
ApeKI GCWGC 4 cut(s) 265, 422, 499, 529
ApoI RAATTY 2 cut(s) 32, 361
AsiGI ACCGGT 1 cut(s) 580
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 720
AspS9I GGNCC 2 cut(s) 494, 524
AsuHPI GGTGA 2 cut(s) 393, 696
AvaII GGWCC 2 cut(s) 494, 524
BaeGI GKGCMC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 388
BauI CACGAG 1 cut(s) 239
Bbv12I GWGCWC 3 cut(s) 86, 246, 546
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 4 cut(s) 277, 409, 486, 516
BccI CCATC 1 cut(s) 361
BceAI ACGGC 2 cut(s) 433, 620
BciT130I CCWGG 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 164
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 2 cut(s) 224, 645
BfoI RGCGCY 1 cut(s) 721
BglII AGATCT 1 cut(s) 166
BisI GCNGC 6 cut(s) 266, 383, 407, 423, 500, 530
BlsI GCNGC 6 cut(s) 267, 384, 408, 424, 501, 531
Bme1390I CCNGG 1 cut(s) 518
Bme18I GGWCC 2 cut(s) 494, 524
BmgT120I GGNCC 2 cut(s) 494, 524
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 518
BmsI GCATC 1 cut(s) 369
Bpu10I CCTNAGC 2 cut(s) 65, 173
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 602
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 3 cut(s) 26, 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 461, 517
Bse118I RCCGGY 2 cut(s) 385, 580
Bse1I ACTGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 1 cut(s) 602
BseLI CCNNNNNNNGG 3 cut(s) 229, 461, 517
BseMII CTCAG 2 cut(s) 187, 548
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 3 cut(s) 161, 540, 585
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 4 cut(s) 277, 409, 486, 516
BshNI GGYRCC 1 cut(s) 388
BshTI ACCGGT 1 cut(s) 580
BsiHKAI GWGCWC 3 cut(s) 86, 246, 546
BsiSI CCGG 4 cut(s) 386, 455, 492, 581
BslI CCNNNNNNNGG 3 cut(s) 229, 461, 517
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 70
Bsp1286I GDGCHC 3 cut(s) 86, 246, 546
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 6 cut(s) 383, 404, 407, 497, 527, 639
BspCNI CTCAG 2 cut(s) 186, 547
BspLI GGNNCC 1 cut(s) 390
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 388
BsrFI RCCGGY 2 cut(s) 385, 580
BsrI ACTGG 1 cut(s) 423
BssAI RCCGGY 2 cut(s) 385, 580
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 518
Bst6I CTCTTC 3 cut(s) 42, 54, 331
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 3 cut(s) 65, 173, 534
BstDSI CCRYGG 1 cut(s) 602
BstH2I RGCGCY 1 cut(s) 721
BstHHI GCGC 1 cut(s) 720
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 262, 412, 636, 724
BstNI CCWGG 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 4 cut(s) 277, 409, 486, 516
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 602
BtsI GCAGTG 2 cut(s) 410, 486
BtsIMutI CAGTG 5 cut(s) 17, 410, 416, 486, 542
Cac8I GCNNGC 1 cut(s) 387
CfoI GCGC 1 cut(s) 720
Cfr10I RCCGGY 2 cut(s) 385, 580
Cfr13I GGNCC 2 cut(s) 494, 524
CpoI CGGWCCG 1 cut(s) 494
Csp6I GTAC 2 cut(s) 565, 642
CspAI ACCGGT 1 cut(s) 580
CspI CGGWCCG 1 cut(s) 494
CviAII CATG 1 cut(s) 620
CviQI GTAC 2 cut(s) 565, 642
DdeI CTNAG 3 cut(s) 65, 173, 534
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 3 cut(s) 42, 54, 331
EarI CTCTTC 3 cut(s) 42, 54, 331
Eco47I GGWCC 2 cut(s) 494, 524
Eco57I CTGAAG 1 cut(s) 225
EcoRI GAATTC 2 cut(s) 32, 361
EcoRII CCWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 1 cut(s) 623
FaiI YATR 3 cut(s) 377, 443, 621
FatI CATG 1 cut(s) 619
Fnu4HI GCNGC 6 cut(s) 266, 383, 407, 423, 500, 530
Fsp4HI GCNGC 6 cut(s) 266, 383, 407, 423, 500, 530
FspBI CTAG 2 cut(s) 224, 645
GlaI GCGC 1 cut(s) 719
GluI GCNGC 6 cut(s) 266, 383, 407, 423, 500, 530
HaeII RGCGCY 1 cut(s) 721
HapII CCGG 4 cut(s) 386, 455, 492, 581
HhaI GCGC 1 cut(s) 720
Hin1II CATG 1 cut(s) 623
Hin6I GCGC 1 cut(s) 718
HinP1I GCGC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 6 cut(s) 290, 332, 574, 623, 686, 698
HpaII CCGG 4 cut(s) 386, 455, 492, 581
HphI GGTGA 2 cut(s) 393, 696
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 6 cut(s) 331, 337, 360, 367, 682, 697
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 521
HpyCH4V TGCA 2 cut(s) 84, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 412, 636, 724
HpyF3I CTNAG 3 cut(s) 65, 173, 534
Hsp92II CATG 1 cut(s) 623
HspAI GCGC 1 cut(s) 718
KroI GCCGGC 1 cut(s) 385
KroNI GCCGGC 1 cut(s) 387
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 4 cut(s) 94, 249, 437, 541
Lsp1109I GCAGC 4 cut(s) 277, 409, 486, 516
LweI GCATC 1 cut(s) 369
MaeI CTAG 2 cut(s) 224, 645
MaeIII GTNAC 1 cut(s) 656
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 8 cut(s) 28, 59, 71, 139, 155, 158, 318, 350
MfeI CAATTG 1 cut(s) 631
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 3 cut(s) 86, 246, 546
MluCI AATT 6 cut(s) 32, 108, 150, 361, 431, 631
MlyI GAGTC 2 cut(s) 326, 617
MmeI TCCRAC 1 cut(s) 271
MroNI GCCGGC 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 320
MspA1I CMGCKG 2 cut(s) 499, 529
MspI CCGG 4 cut(s) 386, 455, 492, 581
MspR9I CCNGG 1 cut(s) 518
MunI CAATTG 1 cut(s) 631
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 1 cut(s) 518
MwoI GCNNNNNNNGC 4 cut(s) 262, 412, 636, 724
NaeI GCCGGC 1 cut(s) 387
NdeII GATC 1 cut(s) 166
NgoMIV GCCGGC 1 cut(s) 385
NlaIII CATG 1 cut(s) 623
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 1 cut(s) 70
PdiI GCCGGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 4 cut(s) 290, 574, 686, 698
PinAI ACCGGT 1 cut(s) 580
PkrI GCNGC 6 cut(s) 267, 384, 408, 424, 501, 531
PleI GAGTC 2 cut(s) 326, 617
PpsI GAGTC 2 cut(s) 326, 617
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 2 cut(s) 494, 524
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 2 cut(s) 566, 643
RsaNI GTAC 2 cut(s) 565, 642
Rsr2I CGGWCCG 1 cut(s) 494
RsrII CGGWCCG 1 cut(s) 494
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 6 cut(s) 266, 383, 407, 423, 500, 530
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 2 cut(s) 494, 524
SchI GAGTC 2 cut(s) 326, 617
ScrFI CCNGG 1 cut(s) 518
SduI GDGCHC 3 cut(s) 86, 246, 546
SetI ASST 9 cut(s) 9, 66, 99, 205, 258, 326, 442, 680, 729
SfaNI GCATC 1 cut(s) 369
SinI GGWCC 2 cut(s) 494, 524
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 6 cut(s) 32, 108, 150, 361, 431, 631
SsiI CCGC 6 cut(s) 383, 404, 407, 497, 527, 639
SspMI CTAG 2 cut(s) 224, 645
StyD4I CCNGG 1 cut(s) 516
TaqII GACCGA 1 cut(s) 644
TasI AATT 6 cut(s) 32, 108, 150, 361, 431, 631
TatI WGTACW 1 cut(s) 564
TauI GCSGC 2 cut(s) 385, 409
TfiI GAWTC 4 cut(s) 290, 574, 686, 698
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 5 cut(s) 17, 417, 423, 486, 542
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 4 cut(s) 265, 422, 499, 529
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 213, 303, 458, 690
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 5 cut(s) 17, 417, 423, 486, 542
VneI GTGCAC 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 494, 524
XapI RAATTY 2 cut(s) 32, 361
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 224, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.