MD01G1100200.v1.1

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016393
Physical Location & Seq
Reverse (-)
21329340 .. 21330718
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1100200.v1.1.491

Sequence Viewer

Length: 873 bp
ATGTGTAGGGTACAAAAAATGCACTTGAAGCGCAATTCACCTTCTATAAATGCTTTTGGCCTTGTGTGTTTTGTTCAACGTCCATCATATATATCACAAGAACTAGAAACCAAAGTACGTACTTGTAAGCAACCGACACTAACCGTAATGGAGGTTCAGTGCAGCCCCCTTAGCTGGGAATTCTTCTATCAGGAAGAGGGGATAGAAGAGCTAAAGCATTCTCTTTCGTGCACAAGTTTGGAGCTTGAGACGACAATTTTATCAGCAAAAGAGAAGATTTCGACAAGAGAAGAAGAAATTGCTCGTCTCAAAGATCTCCTAAGCAAAGCCCTCCAAGAGAGAGATGAAGCAGAAGCAAAATGCCAAACCCTAGTTTTGGACAAACTCAAGCTCCAACAAGAGCTACAAAAGCAGCAGCAACAAAATGAGGATAACGAATCAAACAAACACTTTGCCTCTTCTGACTCCGAGATCATCGTTCCATCTCCGAATGCAGACCCTATTATGATGCCGCCGGCGCCATTGTCATCACCGCCGCCACTGCCACATGCTGCTTTGAAATTAGGAGCTGAGAAGCCGTTGCCGGAAAAAGGGAGGCTACTTCAAGCAGTGATTGAAGCCGGACCTCTGCTTCAAACCCTTCTCCTGGCTGGACCGTTGCCTCAGTGGCAGCACCCTCCTCCCCAACTAAAGTCCATTGAGATCCCACCGGTTGCCATTTCTCCTCCACCACGGCGACTTCTAAACCGAGACTCCTGCATTAGTAGTAGTAGTGCTAGTTGTTTCAGTAACAAGAGAAGTCTGGTAAGCTCTGATGGTTCTGGTTCTGATTCTCCGCCCAACACCAAGCACCAAAAGACTGTTCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

291

Amino Acids

32.2

Weight (kDa)

6.67

Isoelectric Point (pI)

78.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 67 - 286 8.1e-67 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AciI CCGC 4 cut(s) 512, 533, 536, 836
AclWI GGATC 1 cut(s) 697
AcsI RAATTY 1 cut(s) 179
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 3 cut(s) 12, 117, 121
AfiI CCNNNNNNNGG 5 cut(s) 174, 175, 376, 590, 646
AgeI ACCGGT 1 cut(s) 709
AgsI TTSAA 6 cut(s) 28, 77, 559, 605, 617, 635
AjnI CCWGG 1 cut(s) 645
AjuI GAANNNNNNNTTGG 1 cut(s) 846
AluBI AGCT 7 cut(s) 174, 211, 244, 391, 403, 569, 810
AluI AGCT 7 cut(s) 174, 211, 244, 391, 403, 569, 810
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 3 cut(s) 242, 311, 744
Alw44I GTGCAC 1 cut(s) 229
AlwI GGATC 1 cut(s) 697
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 229
ApeKI GCWGC 5 cut(s) 162, 412, 415, 551, 670
ApoI RAATTY 1 cut(s) 179
AsiGI ACCGGT 1 cut(s) 709
AspLEI GCGC 2 cut(s) 33, 520
AspS9I GGNCC 2 cut(s) 623, 653
AsuHPI GGTGA 2 cut(s) 30, 522
AvaII GGWCC 2 cut(s) 623, 653
BaeGI GKGCMC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 5 cut(s) 174, 424, 427, 538, 682
BccI CCATC 3 cut(s) 91, 490, 809
BceAI ACGGC 2 cut(s) 562, 749
BcgI CGANNNNNNTGC 2 cut(s) 738, 772
BciT130I CCWGG 1 cut(s) 647
BcoDI GTCTC 3 cut(s) 242, 311, 744
BfaI CTAG 3 cut(s) 104, 371, 777
BfoI RGCGCY 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 667
BglII AGATCT 1 cut(s) 313
BisI GCNGC 7 cut(s) 163, 413, 416, 512, 536, 552, 671
BlsI GCNGC 7 cut(s) 164, 414, 417, 513, 537, 553, 672
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 2 cut(s) 623, 653
BmgT120I GGNCC 2 cut(s) 623, 653
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 647
BmsI GCATC 1 cut(s) 498
Bpu10I CCTNAGC 2 cut(s) 170, 320
BpuEI CTTGAG 2 cut(s) 266, 371
BsaAI YACGTR 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 731
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 6 cut(s) 143, 173, 375, 405, 737, 767
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 175, 376, 590, 646
Bse118I RCCGGY 2 cut(s) 514, 709
BseBI CCWGG 1 cut(s) 647
BseDI CCNNGG 1 cut(s) 731
BseLI CCNNNNNNNGG 5 cut(s) 174, 175, 376, 590, 646
BseMII CTCAG 2 cut(s) 561, 677
BseRI GAGGAG 2 cut(s) 669, 714
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 5 cut(s) 174, 424, 427, 538, 682
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 181
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 517
BshTI ACCGGT 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 4 cut(s) 515, 584, 621, 710
BslI CCNNNNNNNGG 5 cut(s) 174, 175, 376, 590, 646
BsmAI GTCTC 3 cut(s) 242, 311, 744
BsmBI CGTCTC 2 cut(s) 242, 311
BsmI GAATGC 2 cut(s) 217, 496
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 313, 471, 702
BspACI CCGC 4 cut(s) 512, 533, 536, 836
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 562, 676
BspLI GGNNCC 1 cut(s) 519
BspPI GGATC 1 cut(s) 697
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 517
BsrFI RCCGGY 2 cut(s) 514, 709
BssAI RCCGGY 2 cut(s) 514, 709
BssECI CCNNGG 1 cut(s) 731
BssMI GATC 3 cut(s) 313, 471, 702
BssNI GRCGYC 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 3 cut(s) 145, 657, 862
Bst6I CTCTTC 3 cut(s) 189, 201, 463
BstACI GRCGYC 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 4 cut(s) 170, 320, 570, 663
BstDSI CCRYGG 1 cut(s) 731
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 2 cut(s) 33, 520
BstKTI GATC 3 cut(s) 316, 474, 705
BstMAI GTCTC 3 cut(s) 242, 311, 744
BstMBI GATC 3 cut(s) 313, 471, 702
BstMWI GCNNNNNNNGC 6 cut(s) 28, 171, 409, 517, 541, 667
BstNI CCWGG 1 cut(s) 647
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 233
BstSNI TACGTA 1 cut(s) 119
BstV1I GCAGC 5 cut(s) 174, 424, 427, 538, 682
BstX2I RGATCY 2 cut(s) 313, 702
BstYI RGATCY 2 cut(s) 313, 702
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 731
BtsI GCAGTG 2 cut(s) 539, 615
BtsIMutI CAGTG 4 cut(s) 164, 539, 615, 671
Cac8I GCNNGC 1 cut(s) 516
CfoI GCGC 2 cut(s) 33, 520
Cfr10I RCCGGY 2 cut(s) 514, 709
Cfr13I GGNCC 2 cut(s) 623, 653
Csp6I GTAC 3 cut(s) 11, 116, 120
CspAI ACCGGT 1 cut(s) 709
CviAII CATG 1 cut(s) 548
CviQI GTAC 3 cut(s) 11, 116, 120
DdeI CTNAG 4 cut(s) 170, 320, 570, 663
DinI GGCGCC 1 cut(s) 519
DpnI GATC 3 cut(s) 315, 473, 704
DpnII GATC 3 cut(s) 313, 471, 702
Eam1104I CTCTTC 3 cut(s) 189, 201, 463
EarI CTCTTC 3 cut(s) 189, 201, 463
EciI GGCGGA 1 cut(s) 825
Eco105I TACGTA 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 623, 653
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 645
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
Esp3I CGTCTC 2 cut(s) 242, 311
FaeI CATG 1 cut(s) 551
FaiI YATR 6 cut(s) 47, 88, 90, 92, 506, 549
FatI CATG 1 cut(s) 547
Fnu4HI GCNGC 7 cut(s) 163, 413, 416, 512, 536, 552, 671
Fsp4HI GCNGC 7 cut(s) 163, 413, 416, 512, 536, 552, 671
FspBI CTAG 3 cut(s) 104, 371, 777
GlaI GCGC 2 cut(s) 32, 519
GluI GCNGC 7 cut(s) 163, 413, 416, 512, 536, 552, 671
GsaI CCCAGC 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 1 cut(s) 60
HapII CCGG 4 cut(s) 515, 584, 621, 710
HhaI GCGC 2 cut(s) 33, 520
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 1 cut(s) 551
Hin6I GCGC 2 cut(s) 31, 518
HinP1I GCGC 2 cut(s) 31, 518
HinfI GANTC 4 cut(s) 437, 464, 752, 830
HpaII CCGG 4 cut(s) 515, 584, 621, 710
HphI GGTGA 2 cut(s) 30, 522
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 5 cut(s) 463, 469, 489, 814, 829
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 51, 650
HpyCH4III ACNGT 3 cut(s) 145, 657, 862
HpyCH4IV ACGT 2 cut(s) 79, 118
HpyCH4V TGCA 5 cut(s) 22, 162, 231, 494, 759
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 171, 409, 517, 541, 667
HpyF3I CTNAG 4 cut(s) 170, 320, 570, 663
HpySE526I ACGT 2 cut(s) 79, 118
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 1 cut(s) 551
HspAI GCGC 2 cut(s) 31, 518
KasI GGCGCC 1 cut(s) 517
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 313, 471, 702
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 3 cut(s) 241, 396, 566
Lsp1109I GCAGC 5 cut(s) 174, 424, 427, 538, 682
LweI GCATC 1 cut(s) 498
MaeI CTAG 3 cut(s) 104, 371, 777
MaeII ACGT 2 cut(s) 79, 118
MaeIII GTNAC 1 cut(s) 788
MalI GATC 3 cut(s) 315, 473, 704
MboI GATC 3 cut(s) 313, 471, 702
MboII GAAGA 7 cut(s) 175, 206, 218, 286, 302, 305, 450
MflI RGATCY 2 cut(s) 313, 702
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 5 cut(s) 34, 179, 255, 297, 560
Mly113I GGCGCC 1 cut(s) 518
MlyI GAGTC 2 cut(s) 458, 746
MmeI TCCRAC 1 cut(s) 418
MreI CGCCGGCG 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 514
MspI CCGG 4 cut(s) 515, 584, 621, 710
MspR9I CCNGG 1 cut(s) 647
Mva1269I GAATGC 2 cut(s) 217, 496
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 6 cut(s) 28, 171, 409, 517, 541, 667
NaeI GCCGGC 1 cut(s) 516
NarI GGCGCC 1 cut(s) 518
NdeII GATC 3 cut(s) 313, 471, 702
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 1 cut(s) 551
NlaIV GGNNCC 1 cut(s) 519
NspI RCATGY 1 cut(s) 551
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 2 cut(s) 217, 496
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 437, 830
PinAI ACCGGT 1 cut(s) 709
PkrI GCNGC 7 cut(s) 164, 414, 417, 513, 537, 553, 672
PleI GAGTC 2 cut(s) 458, 746
PluTI GGCGCC 1 cut(s) 521
PpsI GAGTC 2 cut(s) 458, 746
Ppu21I YACGTR 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 2 cut(s) 623, 653
PsrI GAACNNNNNNTAC 2 cut(s) 138, 170
PsuI RGATCY 2 cut(s) 313, 702
RsaI GTAC 3 cut(s) 12, 117, 121
RsaNI GTAC 3 cut(s) 11, 116, 120
SapI GCTCTTC 1 cut(s) 201
SatI GCNGC 7 cut(s) 163, 413, 416, 512, 536, 552, 671
Sau3AI GATC 3 cut(s) 313, 471, 702
Sau96I GGNCC 2 cut(s) 623, 653
SchI GAGTC 2 cut(s) 458, 746
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 1 cut(s) 498
SfoI GGCGCC 1 cut(s) 519
SgrAI CRCCGGYG 1 cut(s) 514
SinI GGWCC 2 cut(s) 623, 653
SmlI CTYRAG 2 cut(s) 245, 386
SmoI CTYRAG 2 cut(s) 245, 386
SnaBI TACGTA 1 cut(s) 119
Sse9I AATT 5 cut(s) 34, 179, 255, 297, 560
SsiI CCGC 4 cut(s) 512, 533, 536, 836
SspDI GGCGCC 1 cut(s) 517
SspMI CTAG 3 cut(s) 104, 371, 777
StyD4I CCNGG 1 cut(s) 645
TaaI ACNGT 3 cut(s) 145, 657, 862
TaiI ACGT 2 cut(s) 82, 121
TaqI TCGA 1 cut(s) 281
TasI AATT 5 cut(s) 34, 179, 255, 297, 560
TauI GCSGC 2 cut(s) 514, 538
TfiI GAWTC 2 cut(s) 437, 830
TscAI CASTG 4 cut(s) 164, 546, 615, 671
TseI GCWGC 5 cut(s) 162, 412, 415, 551, 670
TspDTI ATGAA 1 cut(s) 360
TspRI CASTG 4 cut(s) 164, 546, 615, 671
VneI GTGCAC 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 623, 653
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 551
XspI CTAG 3 cut(s) 104, 371, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.