Prupe.2G205900_v2.0.a1

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016393
Physical Location & Seq
Reverse (-)
24037306 .. 24038858
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G205900.1

Sequence Viewer

Length: 762 bp
ATGGAAGTTCAGTGCAGTCCTTGGGAACTTTGCTATCAGGAAGAGGGGATACAAGAGTTGAAGCATTCTCTTCTGTACACAACCTTGGAGCTTGAGACAACAATTTTGTCAGCAAAGGAGAAGATTGCAAAGAGAGAAGAAGAACTTGTTCAGCTCAAAGATCTCCTAAGAAGAACCGTCCAGGAGAGAGATGAGGCTCAAGCAAAATGCCAAAGGCTAGTTTTGGACAAGCTCATGCTCCAACAAGAGCTGCAAAAACAGCAAAAACAACAAGATCAAGAACTAGTTGCTGCACAAAATGAGGAAATTGAATCAAAAGGCAGGGATTCAAACAACAAACATTTTGCCTCTTCTGACTCTGATGAAACCATCACTGCATCACCAAATGCAGACCGAATTACGATCCCACCACCATTGTCGCCACAACCACAAGCAGCCTCAAAATTGGGAGCTGAGAAGCCATTAGTATTGCCAGAGAAGGGGAAGCTACTGCAAGCAGTAATCGAAGCCGGACCACTCCTTCAAAACCTTCTCCTGGCTGGACCTCTGCCTCAGTGGCAGCACCCTCCTCCCCAGCTCAAATCCATTGAGATTCCACCGGTTGCAATCTTTCCTCCAACGCGGCAGCGTCTTCTGCCCCAAGACTCTTGCATTAGCAGTAACATTAGCTGTTTCAGCAACAAGAGAAGCCTGGTGCACTGTGATGAGCCTGGTTCTGATTCTTCACCCATCACCAAGTACCAAAAGCTTGTTCTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

254

Amino Acids

28.43

Weight (kDa)

5.51

Isoelectric Point (pI)

72.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 622
AciI CCGC 1 cut(s) 622
AclWI GGATC 1 cut(s) 397
AfaI GTAC 2 cut(s) 77, 740
AfiI CCNNNNNNNGG 2 cut(s) 479, 535
AgeI ACCGGT 1 cut(s) 598
AgsI TTSAA 4 cut(s) 61, 311, 330, 524
AhlI ACTAGT 1 cut(s) 283
AjnI CCWGG 4 cut(s) 180, 534, 690, 709
AjuI GAANNNNNNNTTGG 1 cut(s) 735
AluBI AGCT 9 cut(s) 91, 154, 232, 250, 452, 487, 577, 669, 748
AluI AGCT 9 cut(s) 91, 154, 232, 250, 452, 487, 577, 669, 748
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 695
AlwI GGATC 1 cut(s) 397
ApaLI GTGCAC 1 cut(s) 695
ApeKI GCWGC 5 cut(s) 250, 290, 434, 559, 625
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AsiGI ACCGGT 1 cut(s) 598
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 2 cut(s) 512, 542
AsuHPI GGTGA 3 cut(s) 372, 717, 724
AvaII GGWCC 2 cut(s) 512, 542
BaeGI GKGCMC 1 cut(s) 699
BaeI ACNNNNGTAYC 2 cut(s) 41, 74
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 699
BbvI GCAGC 5 cut(s) 237, 277, 446, 571, 637
BccI CCATC 2 cut(s) 377, 737
BciT130I CCWGG 4 cut(s) 182, 536, 692, 711
BciVI GTATCC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 89
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 2 cut(s) 218, 284
BfuI GTATCC 1 cut(s) 42
BglI GCCNNNNNGGC 1 cut(s) 556
BglII AGATCT 1 cut(s) 160
BisI GCNGC 6 cut(s) 251, 291, 435, 560, 623, 626
BlsI GCNGC 6 cut(s) 252, 292, 436, 561, 624, 627
Bme1390I CCNGG 4 cut(s) 182, 536, 692, 711
Bme18I GGWCC 2 cut(s) 512, 542
BmgT120I GGNCC 2 cut(s) 512, 542
BmrFI CCNGG 4 cut(s) 182, 536, 692, 711
BmsI GCATC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 623
BpuEI CTTGAG 2 cut(s) 113, 183
BsaJI CCNNGG 2 cut(s) 20, 84
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 535
Bse118I RCCGGY 1 cut(s) 598
BseBI CCWGG 4 cut(s) 182, 536, 692, 711
BseDI CCNNGG 2 cut(s) 20, 84
BseLI CCNNNNNNNGG 2 cut(s) 479, 535
BseMII CTCAG 2 cut(s) 444, 566
BseRI GAGGAG 1 cut(s) 558
BseSI GKGCMC 1 cut(s) 699
BseXI GCAGC 5 cut(s) 237, 277, 446, 571, 637
BseYI CCCAGC 1 cut(s) 573
BsgI GTGCAG 2 cut(s) 34, 276
Bsh1236I CGCG 1 cut(s) 622
BshTI ACCGGT 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 699
BsiSI CCGG 2 cut(s) 510, 599
BslI CCNNNNNNNGG 2 cut(s) 479, 535
BsmAI GTCTC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 699
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 3 cut(s) 160, 274, 402
BspACI CCGC 1 cut(s) 622
BspCNI CTCAG 2 cut(s) 445, 565
BspFNI CGCG 1 cut(s) 622
BspPI GGATC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 598
BsrGI TGTACA 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 598
BssECI CCNNGG 2 cut(s) 20, 84
BssMI GATC 3 cut(s) 160, 274, 402
BssT1I CCWWGG 2 cut(s) 20, 84
Bst2UI CCWGG 4 cut(s) 182, 536, 692, 711
Bst4CI ACNGT 2 cut(s) 178, 701
Bst6I CTCTTC 3 cut(s) 36, 75, 355
BstAUI TGTACA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 167, 453, 552
BstFNI CGCG 1 cut(s) 622
BstKTI GATC 3 cut(s) 163, 277, 405
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 160, 274, 402
BstMWI GCNNNNNNNGC 5 cut(s) 259, 556, 634, 675, 754
BstNI CCWGG 4 cut(s) 182, 536, 692, 711
BstSCI CCNGG 4 cut(s) 180, 534, 690, 709
BstSLI GKGCMC 1 cut(s) 699
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 5 cut(s) 237, 277, 446, 571, 637
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuI GTATCC 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 4 cut(s) 17, 372, 560, 697
Cac8I GCNNGC 1 cut(s) 495
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 512, 542
CseI GACGC 1 cut(s) 617
Csp6I GTAC 2 cut(s) 76, 739
CspAI ACCGGT 1 cut(s) 598
CspCI CAANNNNNGTGG 2 cut(s) 396, 431
CviAII CATG 1 cut(s) 235
CviQI GTAC 2 cut(s) 76, 739
DdeI CTNAG 3 cut(s) 167, 453, 552
DpnI GATC 3 cut(s) 162, 276, 404
DpnII GATC 3 cut(s) 160, 274, 402
Eam1104I CTCTTC 3 cut(s) 36, 75, 355
EarI CTCTTC 3 cut(s) 36, 75, 355
Eco130I CCWWGG 2 cut(s) 20, 84
Eco47I GGWCC 2 cut(s) 512, 542
EcoRII CCWGG 4 cut(s) 180, 534, 690, 709
EcoT14I CCWWGG 2 cut(s) 20, 84
ErhI CCWWGG 2 cut(s) 20, 84
FaeI CATG 1 cut(s) 238
FaiI YATR 1 cut(s) 236
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 6 cut(s) 251, 291, 435, 560, 623, 626
Fsp4HI GCNGC 6 cut(s) 251, 291, 435, 560, 623, 626
FspBI CTAG 2 cut(s) 218, 284
GluI GCNGC 6 cut(s) 251, 291, 435, 560, 623, 626
GsaI CCCAGC 1 cut(s) 577
HapII CCGG 2 cut(s) 510, 599
HgaI GACGC 1 cut(s) 617
Hin1II CATG 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 6 cut(s) 311, 326, 356, 592, 644, 719
HpaII CCGG 2 cut(s) 510, 599
HphI GGTGA 3 cut(s) 372, 717, 724
Hpy166II GTNNAC 2 cut(s) 78, 697
Hpy188I TCNGA 3 cut(s) 355, 361, 718
Hpy188III TCNNGA 2 cut(s) 38, 278
Hpy8I GTNNAC 2 cut(s) 78, 697
HpyAV CCTTC 3 cut(s) 472, 530, 539
HpyCH4III ACNGT 2 cut(s) 178, 701
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 556, 634, 675, 754
HpyF3I CTNAG 3 cut(s) 167, 453, 552
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 3 cut(s) 160, 274, 402
LmnI GCTCC 3 cut(s) 88, 243, 449
Lsp1109I GCAGC 5 cut(s) 237, 277, 446, 571, 637
LweI GCATC 1 cut(s) 386
MaeI CTAG 2 cut(s) 218, 284
MaeIII GTNAC 1 cut(s) 659
MalI GATC 3 cut(s) 162, 276, 404
MboI GATC 3 cut(s) 160, 274, 402
MboII GAAGA 9 cut(s) 53, 62, 133, 149, 152, 183, 342, 623, 714
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 699
MluCI AATT 4 cut(s) 102, 306, 396, 443
MlyI GAGTC 2 cut(s) 350, 638
MmeI TCCRAC 2 cut(s) 265, 641
MroXI GAANNNNTTC 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 702
MspI CCGG 2 cut(s) 510, 599
MspR9I CCNGG 4 cut(s) 182, 536, 692, 711
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 4 cut(s) 182, 536, 692, 711
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 5 cut(s) 259, 556, 634, 675, 754
NdeII GATC 3 cut(s) 160, 274, 402
NlaIII CATG 1 cut(s) 238
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 4 cut(s) 311, 326, 592, 719
PfoI TCCNGGA 1 cut(s) 180
PinAI ACCGGT 1 cut(s) 598
PkrI GCNGC 6 cut(s) 252, 292, 436, 561, 624, 627
PleI GAGTC 2 cut(s) 350, 638
PpsI GAGTC 2 cut(s) 350, 638
Psp6I CCWGG 4 cut(s) 180, 534, 690, 709
PspFI CCCAGC 1 cut(s) 573
PspGI CCWGG 4 cut(s) 180, 534, 690, 709
PspPI GGNCC 2 cut(s) 512, 542
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 77, 740
RsaNI GTAC 2 cut(s) 76, 739
RseI CAYNNNNRTG 1 cut(s) 702
SatI GCNGC 6 cut(s) 251, 291, 435, 560, 623, 626
Sau3AI GATC 3 cut(s) 160, 274, 402
Sau96I GGNCC 2 cut(s) 512, 542
SchI GAGTC 2 cut(s) 350, 638
ScrFI CCNGG 4 cut(s) 182, 536, 692, 711
SduI GDGCHC 1 cut(s) 699
SfaNI GCATC 1 cut(s) 386
SinI GGWCC 2 cut(s) 512, 542
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 2 cut(s) 92, 198
SmoI CTYRAG 2 cut(s) 92, 198
SpeI ACTAGT 1 cut(s) 283
Sse9I AATT 4 cut(s) 102, 306, 396, 443
SsiI CCGC 1 cut(s) 622
SspMI CTAG 2 cut(s) 218, 284
StyD4I CCNGG 4 cut(s) 180, 534, 690, 709
StyI CCWWGG 2 cut(s) 20, 84
TaaI ACNGT 2 cut(s) 178, 701
TaqI TCGA 1 cut(s) 504
TaqII GACCGA 1 cut(s) 408
TasI AATT 4 cut(s) 102, 306, 396, 443
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 4 cut(s) 311, 326, 592, 719
TscAI CASTG 4 cut(s) 17, 379, 560, 704
TseI GCWGC 5 cut(s) 250, 290, 434, 559, 625
TspDTI ATGAA 1 cut(s) 378
TspRI CASTG 4 cut(s) 17, 379, 560, 704
VneI GTGCAC 1 cut(s) 695
VpaK11BI GGWCC 2 cut(s) 512, 542
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 2 cut(s) 218, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.