FvH4_7g18400

Pectate lyase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
15387629 .. 15393573
5945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18400.t3

Sequence Viewer

Length: 1245 bp
ATGCCTCCTACCACCTGCATTCTCTTAATATGCCTCTTGAGCTCTCTCTCGTCCCTCACCTTAGCTTCCCTAAACCTCAACCTCACCCTCCCCCATCAACACGTCAATCCTGAAGCTGTGGCTCAAGAAGTACAAAGGAGAGTCAATGCCTCCCTCTCCCGCCGCGAAATGTTGTCCCTCCATGACCAGCAATGCGCCACGGGCAACCCCATCGACGACTGCTGGCGCTGCTCCTCCACCAACTGGGCCGACAACCGCCAGCAGCTCGCCGACTGCGGCATCGGCTTCGGCGCAGACGCAATGGGCGGCAAAGGCGGCCAGATCTACATCGTCACCGACTCCTCCGACCGCAACGCGGCCAACCCAACACCCGGCACTCTCCGCCACGCCGTCATCCAAACCGAACCCCTCTGGATCACCTTCTCCTCCGACATGACAATCAAACTCAAAGCCGAGCTCATCGTCAACTCCTTCAAGACCATCGACGGCCGCGGCCACTCCGTCCACGTCACCGGCGGAGGCTGCATCACCCTCCAGTACGTCTCCAACGTCATCATCCACAACATCCACGTCCACCACTGCAAGCCCGCCGGCAACACCAACGTCGCCTCCTCCCCGACCCACGTCGGCTGGCGCGGCAAGTCCGACGGCGACGGAATCTCCTTATTCGGCGCGCGTAAAGTCTGGATCGACCACTGCTCCTTGTCCTACTGCGCCGACGGACTCATCGACGCCATAATGGGGTCCACCGGGATCACGATTTCCAACAACTATTTTGCGCACCACGACGAGGTGATGCTGTTGGGTCACGACGATAAGTACTTGCCGGACTCCGGGATGCAGGTGACGATTGCGTTCAATCATTTCGGGGAGGCGCTGGTGCAGCGTATGCCGAGGTGTAGGCGAGGGTATATACATGTGGTGAATAATGACTTCACGCAGTGGGAGATGTATGCGATTGGGGGGAGTGCGAATCCGACGATTAATAGTCAGGGGAATCGGTACACTGCTCCGATAAACCAGAACGCCAAGGAGGTGACAAAGCGCGTGGACACGAACGAAGGGGATTGGGACAACTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCCTTCTTCGTGCCATCCGGTGCGGGCATGAGCACCCAGTACGCTAAGGCCTCAAGCATTGAACCCAAGTCGGTGGGTCTCATTGACCGCCTCACCGTCACCGCCGGTGTCTTCGGCGACCCAAGGTAA

Protein Analysis

415

Amino Acids

45.14

Weight (kDa)

6.26

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectate_lyase_4 PF00544 148 - 340 4.2e-21 Pectate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 23, 832
Acc16I TGCGCA 1 cut(s) 780
Acc36I ACCTGC 2 cut(s) 23, 832
AccB7I CCANNNNNTGG 1 cut(s) 243
AccII CGCG 7 cut(s) 165, 356, 492, 636, 674, 676, 1047
AclWI GGATC 3 cut(s) 422, 695, 761
AcoI YGGCCR 4 cut(s) 316, 357, 487, 493
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 732
AdeI CACNNNGTG 1 cut(s) 942
AfaI GTAC 5 cut(s) 132, 539, 821, 1004, 1157
AfiI CCNNNNNNNGG 6 cut(s) 243, 355, 371, 741, 790, 833
AflIII ACRYGT 2 cut(s) 100, 916
AgsI TTSAA 3 cut(s) 475, 859, 1178
AjiI CACGTC 4 cut(s) 103, 508, 571, 625
AluBI AGCT 5 cut(s) 42, 65, 116, 265, 457
AluI AGCT 5 cut(s) 42, 65, 116, 265, 457
Alw21I GWGCWC 3 cut(s) 44, 459, 1151
Alw26I GTCTC 2 cut(s) 547, 1199
AlwI GGATC 3 cut(s) 422, 695, 761
AoxI GGCC 6 cut(s) 246, 316, 357, 487, 493, 1164
ApeKI GCWGC 4 cut(s) 228, 262, 522, 883
AseI ATTAAT 1 cut(s) 984
AspS9I GGNCC 2 cut(s) 246, 744
AsuC2I CCSGG 3 cut(s) 372, 751, 835
AvaII GGWCC 1 cut(s) 744
BanII GRGCYC 2 cut(s) 44, 459
BbsI GAAGAC 1 cut(s) 1219
Bbv12I GWGCWC 3 cut(s) 44, 459, 1151
BbvI GCAGC 4 cut(s) 215, 274, 509, 895
BccI CCATC 4 cut(s) 102, 218, 488, 1138
BceAI ACGGC 3 cut(s) 374, 502, 664
BcgI CGANNNNNNTGC 4 cut(s) 193, 227, 268, 302
BcnI CCSGG 3 cut(s) 372, 751, 835
BcoDI GTCTC 2 cut(s) 547, 1199
BfoI RGCGCY 2 cut(s) 229, 878
BfuAI ACCTGC 2 cut(s) 23, 832
BglII AGATCT 1 cut(s) 321
BmcAI AGTACT 1 cut(s) 821
Bme1390I CCNGG 3 cut(s) 372, 751, 835
Bme18I GGWCC 1 cut(s) 744
BmgBI CACGTC 4 cut(s) 103, 508, 571, 625
BmgT120I GGNCC 2 cut(s) 246, 744
BmiI GGNNCC 2 cut(s) 745, 1117
BmrFI CCNGG 3 cut(s) 372, 751, 835
BmrI ACTGGG 2 cut(s) 253, 1147
BmsI GCATC 4 cut(s) 288, 534, 786, 828
BmuI ACTGGG 2 cut(s) 253, 1147
BoxI GACNNNNGTC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 1219
BpmI CTGGAG 2 cut(s) 518, 1105
Bpu10I CCTNAGC 2 cut(s) 61, 1161
BpuEI CTTGAG 3 cut(s) 58, 108, 1153
BpuMI CCSGG 3 cut(s) 372, 751, 835
BsaBI GATNNNNATC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 1199
BsaJI CCNNGG 5 cut(s) 198, 490, 893, 1029, 1238
BsaWI WCCGGW 1 cut(s) 1133
BsaXI ACNNNNNCTCC 6 cut(s) 593, 623, 644, 674, 683, 713
Bsc4I CCNNNNNNNGG 6 cut(s) 243, 355, 371, 741, 790, 833
Bse118I RCCGGY 3 cut(s) 512, 590, 1220
Bse1I ACTGG 5 cut(s) 248, 535, 1082, 1088, 1153
Bse3DI GCAATG 2 cut(s) 197, 306
Bse8I GATNNNNATC 1 cut(s) 326
BseDI CCNNGG 5 cut(s) 198, 490, 893, 1029, 1238
BseGI GGATG 5 cut(s) 393, 555, 564, 843, 1130
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 6 cut(s) 243, 355, 371, 741, 790, 833
BseMI GCAATG 2 cut(s) 197, 306
BseNI ACTGG 5 cut(s) 248, 535, 1082, 1088, 1153
BsePI GCGCGC 1 cut(s) 672
BseRI GAGGAG 4 cut(s) 223, 331, 415, 601
BseX3I CGGCCG 1 cut(s) 487
BseXI GCAGC 4 cut(s) 215, 274, 509, 895
BsgI GTGCAG 1 cut(s) 902
Bsh1236I CGCG 7 cut(s) 165, 356, 492, 636, 674, 676, 1047
Bsh1285I CGRYCG 2 cut(s) 349, 490
BshFI GGCC 6 cut(s) 248, 318, 359, 489, 495, 1166
BsiEI CGRYCG 2 cut(s) 349, 490
BsiHKAI GWGCWC 3 cut(s) 44, 459, 1151
BsiSI CCGG 8 cut(s) 372, 513, 591, 750, 827, 834, 1134, 1221
BslFI GGGAC 4 cut(s) 37, 160, 1085, 1112
BslI CCNNNNNNNGG 6 cut(s) 243, 355, 371, 741, 790, 833
BsmAI GTCTC 2 cut(s) 547, 1199
BsmBI CGTCTC 1 cut(s) 547
BsmFI GGGAC 4 cut(s) 37, 160, 1085, 1112
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 6 cut(s) 248, 318, 359, 489, 495, 1166
Bso31I GGTCTC 1 cut(s) 1199
Bsp1286I GDGCHC 3 cut(s) 44, 459, 1151
Bsp143I GATC 4 cut(s) 321, 414, 687, 753
BspANI GGCC 6 cut(s) 248, 318, 359, 489, 495, 1166
BspFNI CGCG 7 cut(s) 165, 356, 492, 636, 674, 676, 1047
BspLI GGNNCC 2 cut(s) 745, 1117
BspMI ACCTGC 2 cut(s) 23, 832
BspPI GGATC 3 cut(s) 422, 695, 761
BspTNI GGTCTC 1 cut(s) 1199
BsrDI GCAATG 2 cut(s) 197, 306
BsrFI RCCGGY 3 cut(s) 512, 590, 1220
BsrI ACTGG 5 cut(s) 248, 535, 1082, 1088, 1153
BssAI RCCGGY 3 cut(s) 512, 590, 1220
BssECI CCNNGG 5 cut(s) 198, 490, 893, 1029, 1238
BssHII GCGCGC 1 cut(s) 672
BssMI GATC 4 cut(s) 321, 414, 687, 753
BssNI GRCGYC 1 cut(s) 732
BssT1I CCWWGG 2 cut(s) 1029, 1238
Bst4CI ACNGT 1 cut(s) 1213
BstACI GRCGYC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 889
BstC8I GCNNGC 9 cut(s) 224, 260, 267, 584, 588, 592, 632, 674, 1141
BstDEI CTNAG 2 cut(s) 61, 1161
BstDSI CCRYGG 2 cut(s) 198, 490
BstF5I GGATG 5 cut(s) 393, 555, 564, 843, 1130
BstFNI CGCG 7 cut(s) 165, 356, 492, 636, 674, 676, 1047
BstH2I RGCGCY 2 cut(s) 229, 878
BstKTI GATC 4 cut(s) 324, 417, 690, 756
BstMAI GTCTC 2 cut(s) 547, 1199
BstMBI GATC 4 cut(s) 321, 414, 687, 753
BstMCI CGRYCG 2 cut(s) 349, 490
BstNSI RCATGY 1 cut(s) 920
BstPAI GACNNNNGTC 1 cut(s) 623
BstSCI CCNGG 3 cut(s) 370, 749, 833
BstUI CGCG 7 cut(s) 165, 356, 492, 636, 674, 676, 1047
BstV1I GCAGC 4 cut(s) 215, 274, 509, 895
BstV2I GAAGAC 1 cut(s) 1219
BstX2I RGATCY 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 1 cut(s) 321
BstZI CGGCCG 1 cut(s) 487
BsuRI GGCC 6 cut(s) 248, 318, 359, 489, 495, 1166
BtgI CCRYGG 2 cut(s) 198, 490
BtrI CACGTC 4 cut(s) 103, 508, 571, 625
BtsCI GGATG 5 cut(s) 393, 555, 564, 843, 1130
BtsI GCAGTG 4 cut(s) 577, 694, 947, 1005
BtsIMutI CAGTG 4 cut(s) 577, 694, 947, 1005
BveI ACCTGC 2 cut(s) 23, 832
Cac8I GCNNGC 9 cut(s) 224, 260, 267, 584, 588, 592, 632, 674, 1141
Cfr10I RCCGGY 3 cut(s) 512, 590, 1220
Cfr13I GGNCC 2 cut(s) 246, 744
Cfr42I CCGCGG 1 cut(s) 493
CseI GACGC 2 cut(s) 305, 740
Csp6I GTAC 5 cut(s) 131, 538, 820, 1003, 1156
CspCI CAANNNNNGTGG 2 cut(s) 1029, 1064
CviAII CATG 4 cut(s) 182, 433, 917, 1144
CviQI GTAC 5 cut(s) 131, 538, 820, 1003, 1156
DdeI CTNAG 2 cut(s) 61, 1161
DpnI GATC 4 cut(s) 323, 416, 689, 755
DpnII GATC 4 cut(s) 321, 414, 687, 753
DraIII CACNNNGTG 1 cut(s) 942
EaeI YGGCCR 4 cut(s) 316, 357, 487, 493
EagI CGGCCG 1 cut(s) 487
EciI GGCGGA 2 cut(s) 371, 531
Ecl136II GAGCTC 2 cut(s) 42, 457
EclXI CGGCCG 1 cut(s) 487
Eco130I CCWWGG 2 cut(s) 1029, 1238
Eco147I AGGCCT 1 cut(s) 1166
Eco24I GRGCYC 2 cut(s) 44, 459
Eco31I GGTCTC 1 cut(s) 1199
Eco47I GGWCC 1 cut(s) 744
Eco52I CGGCCG 1 cut(s) 487
Eco53kI GAGCTC 2 cut(s) 42, 457
Eco57I CTGAAG 1 cut(s) 132
EcoICRI GAGCTC 2 cut(s) 42, 457
EcoT14I CCWWGG 2 cut(s) 1029, 1238
EcoT38I GRGCYC 2 cut(s) 44, 459
ErhI CCWWGG 2 cut(s) 1029, 1238
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 4 cut(s) 185, 436, 920, 1147
FaqI GGGAC 4 cut(s) 37, 160, 1085, 1112
FatI CATG 4 cut(s) 181, 432, 916, 1143
FauI CCCGC 3 cut(s) 167, 595, 1132
FokI GGATG 5 cut(s) 380, 542, 551, 850, 1117
FriOI GRGCYC 2 cut(s) 44, 459
FspI TGCGCA 1 cut(s) 780
GsuI CTGGAG 2 cut(s) 518, 1105
HaeII RGCGCY 2 cut(s) 229, 878
HaeIII GGCC 6 cut(s) 248, 318, 359, 489, 495, 1166
HapII CCGG 8 cut(s) 372, 513, 591, 750, 827, 834, 1134, 1221
HgaI GACGC 2 cut(s) 305, 740
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 4 cut(s) 185, 436, 920, 1147
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 7 cut(s) 141, 338, 657, 723, 830, 973, 997
HpaII CCGG 8 cut(s) 372, 513, 591, 750, 827, 834, 1134, 1221
Hpy166II GTNNAC 6 cut(s) 466, 505, 574, 747, 1005, 1051
Hpy188I TCNGA 5 cut(s) 346, 430, 646, 978, 1014
Hpy188III TCNNGA 8 cut(s) 37, 110, 125, 412, 475, 685, 757, 809
Hpy8I GTNNAC 6 cut(s) 466, 505, 574, 747, 1005, 1051
HpyAV CCTTC 4 cut(s) 430, 481, 1055, 1129
HpyCH4III ACNGT 1 cut(s) 1213
HpyCH4IV ACGT 7 cut(s) 102, 507, 540, 549, 570, 603, 624
HpyCH4V TGCA 5 cut(s) 18, 525, 582, 841, 883
HpyF3I CTNAG 2 cut(s) 61, 1161
HpySE526I ACGT 7 cut(s) 102, 507, 540, 549, 570, 603, 624
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 4 cut(s) 185, 436, 920, 1147
KroI GCCGGC 1 cut(s) 590
KroNI GCCGGC 1 cut(s) 592
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 4 cut(s) 321, 414, 687, 753
LmnI GCTCC 4 cut(s) 236, 704, 1015, 1115
Lsp1109I GCAGC 4 cut(s) 215, 274, 509, 895
LweI GCATC 4 cut(s) 288, 534, 786, 828
MaeII ACGT 7 cut(s) 102, 507, 540, 549, 570, 603, 624
MaeIII GTNAC 6 cut(s) 331, 508, 806, 844, 1036, 1213
MalI GATC 4 cut(s) 323, 416, 689, 755
MboI GATC 4 cut(s) 321, 414, 687, 753
MboII GAAGA 2 cut(s) 1114, 1219
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 3 cut(s) 44, 459, 1151
MlyI GAGTC 4 cut(s) 150, 332, 717, 824
MmeI TCCRAC 6 cut(s) 369, 453, 570, 669, 789, 1001
MroNI GCCGGC 1 cut(s) 590
MseI TTAA 2 cut(s) 26, 984
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 8 cut(s) 372, 513, 591, 750, 827, 834, 1134, 1221
MspR9I CCNGG 3 cut(s) 372, 751, 835
Mva1269I GAATGC 1 cut(s) 18
MvnI CGCG 7 cut(s) 165, 356, 492, 636, 674, 676, 1047
NaeI GCCGGC 1 cut(s) 592
NciI CCSGG 3 cut(s) 372, 751, 835
NdeII GATC 4 cut(s) 321, 414, 687, 753
NgoMIV GCCGGC 1 cut(s) 590
NlaIII CATG 4 cut(s) 185, 436, 920, 1147
NlaIV GGNNCC 2 cut(s) 745, 1117
NmeAIII GCCGAG 2 cut(s) 478, 918
NmuCI GTSAC 6 cut(s) 331, 508, 806, 844, 1036, 1213
NsbI TGCGCA 1 cut(s) 780
NspI RCATGY 1 cut(s) 920
PaqCI CACCTGC 2 cut(s) 23, 832
PauI GCGCGC 1 cut(s) 672
PceI AGGCCT 1 cut(s) 1166
PciI ACATGT 1 cut(s) 916
PcsI WCGNNNNNNNCGW 2 cut(s) 546, 726
PctI GAATGC 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 592
PfeI GAWTC 3 cut(s) 657, 973, 997
PflMI CCANNNNNTGG 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 833
PleI GAGTC 4 cut(s) 149, 332, 717, 824
PpsI GAGTC 4 cut(s) 149, 332, 717, 824
PscI ACATGT 1 cut(s) 916
PshAI GACNNNNGTC 1 cut(s) 623
PshBI ATTAAT 1 cut(s) 984
Psp124BI GAGCTC 2 cut(s) 44, 459
PspN4I GGNNCC 2 cut(s) 745, 1117
PspPI GGNCC 2 cut(s) 246, 744
PsuI RGATCY 1 cut(s) 321
PteI GCGCGC 1 cut(s) 672
RsaI GTAC 5 cut(s) 132, 539, 821, 1004, 1157
RsaNI GTAC 5 cut(s) 131, 538, 820, 1003, 1156
SacI GAGCTC 2 cut(s) 44, 459
SacII CCGCGG 1 cut(s) 493
SaqAI TTAA 2 cut(s) 26, 984
Sau3AI GATC 4 cut(s) 321, 414, 687, 753
Sau96I GGNCC 2 cut(s) 246, 744
ScaI AGTACT 1 cut(s) 821
SchI GAGTC 4 cut(s) 150, 332, 717, 824
ScrFI CCNGG 3 cut(s) 372, 751, 835
SduI GDGCHC 3 cut(s) 44, 459, 1151
SfaNI GCATC 4 cut(s) 288, 534, 786, 828
Sfr303I CCGCGG 1 cut(s) 493
SgrAI CRCCGGYG 2 cut(s) 512, 1220
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 1 cut(s) 744
SmlI CTYRAG 3 cut(s) 37, 123, 1168
SmoI CTYRAG 3 cut(s) 37, 123, 1168
SseBI AGGCCT 1 cut(s) 1166
SstI GAGCTC 2 cut(s) 44, 459
StuI AGGCCT 1 cut(s) 1166
StyD4I CCNGG 3 cut(s) 370, 749, 833
StyI CCWWGG 2 cut(s) 1029, 1238
TaaI ACNGT 1 cut(s) 1213
TaiI ACGT 7 cut(s) 105, 510, 543, 552, 573, 606, 627
TaqI TCGA 4 cut(s) 213, 483, 690, 729
TatI WGTACW 2 cut(s) 130, 819
TauI GCSGC 8 cut(s) 165, 279, 309, 318, 359, 492, 495, 639
TfiI GAWTC 3 cut(s) 657, 973, 997
Tru1I TTAA 2 cut(s) 26, 984
Tru9I TTAA 2 cut(s) 26, 984
TscAI CASTG 4 cut(s) 584, 701, 947, 1012
TseFI GTSAC 6 cut(s) 331, 508, 806, 844, 1036, 1213
TseI GCWGC 4 cut(s) 228, 262, 522, 883
Tsp45I GTSAC 6 cut(s) 331, 508, 806, 844, 1036, 1213
TspGWI ACGGA 4 cut(s) 490, 669, 735, 1106
TspRI CASTG 4 cut(s) 584, 701, 947, 1012
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 744
VspI ATTAAT 1 cut(s) 984
XceI RCATGY 1 cut(s) 920
ZrmI AGTACT 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.