Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006501

Physical Location & Seq

Genomic Coordinates Forward (+)

41114039 .. 41114542

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0295700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCCGGATTTGTGGTGGTTTTCGACTTCGACAATACCATCATCGACTGCGACAGCGACAATTTGGTGGTTGACGGGTTGGGTGCCACCGACTTGTTCAATGAGCTCCTCCCCACCATGCCATGGAACTCTCTCATGGATAGGATGATGAATGAGTTTCACTCACAAGGAAAAACATATGAGGACATTGTGGAGGTGCTCAAAACGACTCCAATTCATCACAGAATTGTGGCAGCTATTAAAGTAGCTCATGCTTTAGGATGTGATTTGAGGATTGTGAGTGATGCGAATGTGTTTTTCATTGAGACGATTTTGAAGCATCTTGGTCTGGAGGAATATTTCTCAGAAATCAACACTAACCCAGGTTATGTTGATGAAGAAGGAAGGGTTAGGATTTCTCCTTTCTGTGATTTCACCAGTTCCCCTCATGGGTGTAGCCTCCGCCCTCCTAACATGTGCAAGAGTGTGTGTTACGTCCCGAACCTAAATTTATCGGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0009825 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045229 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

4.68

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 156	5.9e-57	Putative Phosphatase
HAD	PF12710	6 - 129	3.5e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54920 AT5G04310 AT5G04310 AT5G04310
fragaria_vesca	FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400
malus_domestica	MD01G1100600.v1.1
prunus_persica	Prupe.2G206100_v2.0.a1 Prupe.2G206100_v2.0.a1
pyrus_communis	pycom01g12750 pycom07g16230
rosa_chinensis	RchiOBHm_Chr1g0362211
rosa_laevigata	RLG00000027666
rosa_multiflora	Rmu_co8314571.1_g000001 Rmu_sc0001237.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294430
rosa_rugosa	Rorug01G0295600 Rorug01G0295700 Rorug01G0295800.1
rosa_samantha	Rh1AG305100 Rh1BG267900 Rh1CG286100 Rh1DG297900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AciI	CCGC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	487
AfiI	CCNNNNNNNGG	2 cut(s)	123, 429
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	100, 316
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	3 cut(s)	106, 236, 248
AluI	AGCT	3 cut(s)	106, 236, 248
Alw21I	GWGCWC	2 cut(s)	108, 201
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	108, 201
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	502
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	274, 328
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	122, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 429
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	122, 361
BseGI	GGATG	2 cut(s)	150, 266
BseLI	CCNNNNNNNGG	2 cut(s)	123, 429
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	108, 201
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	123, 429
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	108, 201
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	122, 361
BssT1I	CCWWGG	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	150, 266
BstMAI	GTCTC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	150, 266
CviAII	CATG	6 cut(s)	118, 123, 136, 251, 428, 454
CviJI	RGCY	5 cut(s)	5, 106, 236, 248, 438
CviKI_1	RGCY	5 cut(s)	5, 106, 236, 248, 438
DdeI	CTNAG	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	431
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	6 cut(s)	121, 126, 139, 254, 431, 457
FaiI	YATR	9 cut(s)	119, 124, 137, 178, 180, 252, 369, 429, 455
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	6 cut(s)	117, 122, 135, 250, 427, 453
FauNDI	CATATG	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	2 cut(s)	157, 273
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	502
GluI	GCNGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	6 cut(s)	121, 126, 139, 254, 431, 457
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	73, 499
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	2 cut(s)	329, 478
Hpy8I	GTNNAC	2 cut(s)	73, 499
HpyAV	CCTTC	2 cut(s)	374, 378
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	1 cut(s)	459
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	6 cut(s)	121, 126, 139, 254, 431, 457
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	5 cut(s)	19, 314, 348, 375, 430
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	2 cut(s)	274, 328
MaeI	CTAG	1 cut(s)	502
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	470
MboII	GAAGA	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	108, 201
MluCI	AATT	4 cut(s)	61, 213, 225, 487
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	8 cut(s)	119, 175, 187, 264, 325, 435, 449, 456
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	178
NlaIII	CATG	6 cut(s)	121, 126, 139, 254, 431, 457
NlaIV	GGNNCC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	457
PciI	ACATGT	1 cut(s)	453
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	108, 201
SetI	ASST	7 cut(s)	108, 198, 238, 250, 367, 477, 486
SfaNI	GCATC	2 cut(s)	274, 328
Sse9I	AATT	4 cut(s)	61, 213, 225, 487
SsiI	CCGC	1 cut(s)	442
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	502
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	122
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	3 cut(s)	24, 30, 45
TasI	AATT	4 cut(s)	61, 213, 225, 487
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	164, 206, 289, 390
Van91I	CCANNNNNTGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.