Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006501

Physical Location & Seq

Genomic Coordinates Reverse (-)

14500961 .. 14507612

Gene Structure 6652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGCTTCCTACCACCTGCATTCTCTTAATATGCCTCTTGAGCTCTCTCTGTTCCCTCACCTTAGCTTCTCTAAACCTCAACCTAACCCTCCCTCATCAACACCCCTACCCAGAAGCTGTGGCTCAAGAAGTACAAAGGAGAGTGAATGCCTCCCTTTCCCGGCGTGAAATGCTGTCCCTCAAGGACCAGCAATGCGCCGTCGGCAACCCCATCGACGACTGCTGGCGCTGCGACCCCAACTGGGCCAACGACCGCCAGAAGCTCGCTGACTGCGGCATCGGCTTCGGCCAAGACGCCATGGGTGGCAAAGGCGGCCAGATCTACATCGTCACCGACTCCTCCGACCGCGACCCCGCCAACCCAACTCCGGGCACTCTCCGCCACGCCGTGATCCAAACCGAGCCCCTCTGGATTATCTTCTCCGCCGACATGACCATCAAGCTCAAAGTCGAGCTCATCGTCAACAGCTTCAAGACCATCGACGGCCGCGGCGTCAGCGTCCACGTCACCGGCGGCGGATGCATAACCCTCCAGTACGTCTCCAATGTCATCATCCACAACATTCACGTCCACAACTGCAAGCCCGCCGGCAACACCAACATCGCCTCCAGCCCCACCCACGTCGGCTGGCGCGGGAAGTCCGACGGCGACGGCATCTCGCTGTTCAGCGCCCGCAAAATTTGGATAGACCACTGCTCCCTGTCGTACTGCGCCGACGGACTCATCGACGCCATAATGGGGTCCACCGCGATCACGATTTCCAACAACCACTTTGCCCACCACGACGAGGTGATGCTTCTCGGCCACAACGACAAGTACTCGCCGGACACCGGGATGCAGGTGACGATTGCGTTCAACCACTTCGGGGAGGCGCTGGTGCAGCGTATGCCTCGGTGCAGGCTCGGGTATATTCACGTGGTGAACAATGACTTCACGCAGTGGGAGATGTACGCTATCGGCGGCAGCGCCAACCCCACCATTAACAGCCAGGGGAATCGGTACACCGCTCCGATGGACCAGAACGCCAAGGAGGTGACAAAGCGCGTGGACACGAACGAAGGGGATTGGGCGGACTGGAACTGGAGAACGGAGGGGGACATAATGGTAAATGGAGCCTTCTTCGTGCCATCAGGTGCGGGCATGAGCACCCAGTACGCTAAGGCCTCAAGCCTCGAGCCCAAGTCGGTGGGTCTCATTGACCGCCTCACCGTCACCGCCGGTGTCTTCGGCGACCCAAGGGACAGTAGTAGGAGCGAATCATACCCTGGATACAGCGGCGGTGGGACCGTAACCGATGGTACCACCAACACCGGCAGTGGAGGGTCCAGCGGCGGTGACGACTATTTTGGAATGATATTCGGGAACAGTGCTCAACCATCATCATCTGCAAACGCATTCTTCTTCCAGGTCCTCTTCTATCTTGTCAAACACAAGCAAACAGAAGAAACGAATAGTTCACTGGTAGAACATAAGAGTCCGGTTCTTGTCATCGCTCGTATCGTAGATTATATGATGCATCTGCCAGCATTATTGACACCGTACGAAAGCGGACTTGTTCCCTATCTGATCATCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0009825 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045229 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

525

Amino Acids

57.07

Weight (kDa)

5.81

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectate_lyase_4	PF00544	151 - 351	3.4e-21	Pectate lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54920 AT5G04310 AT5G04310 AT5G04310
fragaria_vesca	FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400
malus_domestica	MD01G1100600.v1.1
prunus_persica	Prupe.2G206100_v2.0.a1 Prupe.2G206100_v2.0.a1
pyrus_communis	pycom01g12750 pycom07g16230
rosa_chinensis	RchiOBHm_Chr1g0362211
rosa_laevigata	RLG00000027666
rosa_multiflora	Rmu_co8314571.1_g000001 Rmu_sc0001237.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294430
rosa_rugosa	Rorug01G0295600 Rorug01G0295700 Rorug01G0295800.1
rosa_samantha	Rh1AG305100 Rh1BG267900 Rh1CG286100 Rh1DG297900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	23, 829
Acc36I	ACCTGC	2 cut(s)	23, 829
Acc65I	GGTACC	1 cut(s)	1298
AccB1I	GGYRCC	1 cut(s)	1298
AccBSI	CCGCTC	1 cut(s)	1007
AccII	CGCG	5 cut(s)	348, 489, 633, 749, 1044
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	4 cut(s)	286, 313, 484, 802
AcsI	RAATTY	1 cut(s)	678
AcvI	CACGTG	1 cut(s)	916
AcyI	GRCGYC	3 cut(s)	294, 492, 729
AdeI	CACNNNGTG	3 cut(s)	388, 919, 939
AfaI	GTAC	9 cut(s)	132, 536, 707, 818, 950, 1001, 1154, 1300, 1541
AfiI	CCNNNNNNNGG	8 cut(s)	159, 241, 367, 368, 738, 787, 830, 865
AgsI	TTSAA	2 cut(s)	472, 856
AjiI	CACGTC	3 cut(s)	505, 568, 622
AjnI	CCWGG	3 cut(s)	987, 1264, 1404
AluBI	AGCT	7 cut(s)	42, 65, 116, 262, 442, 454, 468
AluI	AGCT	7 cut(s)	42, 65, 116, 262, 442, 454, 468
Alw21I	GWGCWC	4 cut(s)	44, 456, 1148, 1372
Alw26I	GTCTC	2 cut(s)	544, 1196
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	2 cut(s)	902, 1172
AoxI	GGCC	6 cut(s)	243, 286, 313, 484, 802, 1161
ApeKI	GCWGC	3 cut(s)	228, 880, 963
ApoI	RAATTY	1 cut(s)	678
ArsI	GACNNNNNNTTYG	2 cut(s)	1328, 1360
Asp718I	GGTACC	1 cut(s)	1298
AspLEI	GCGC	8 cut(s)	197, 228, 633, 671, 713, 874, 968, 1044
AspS9I	GGNCC	7 cut(s)	184, 243, 741, 1015, 1284, 1323, 1408
AsuC2I	CCSGG	3 cut(s)	160, 369, 832
AvaI	CYCGRG	2 cut(s)	902, 1172
AvaII	GGWCC	6 cut(s)	184, 741, 1015, 1284, 1323, 1408
BaeGI	GKGCMC	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	1298
BanII	GRGCYC	4 cut(s)	44, 405, 456, 1179
BbrPI	CACGTG	1 cut(s)	916
BbsI	GAAGAC	1 cut(s)	1216
Bbv12I	GWGCWC	4 cut(s)	44, 456, 1148, 1372
BbvI	GCAGC	3 cut(s)	215, 892, 975
BccI	CCATC	7 cut(s)	218, 443, 485, 1006, 1135, 1289, 1384
BceAI	ACGGC	5 cut(s)	182, 371, 499, 661, 667
BcgI	CGANNNNNNTGC	4 cut(s)	193, 227, 265, 299
BciT130I	CCWGG	3 cut(s)	989, 1266, 1406
BciVI	GTATCC	1 cut(s)	1262
BclI	TGATCA	1 cut(s)	1566
BcnI	CCSGG	3 cut(s)	160, 369, 832
BcoDI	GTCTC	2 cut(s)	544, 1196
BfoI	RGCGCY	4 cut(s)	229, 672, 875, 969
BfuAI	ACCTGC	2 cut(s)	23, 829
BfuI	GTATCC	1 cut(s)	1262
BglII	AGATCT	1 cut(s)	318
BmcAI	AGTACT	1 cut(s)	818
Bme1390I	CCNGG	6 cut(s)	160, 369, 832, 989, 1266, 1406
Bme18I	GGWCC	6 cut(s)	184, 741, 1015, 1284, 1323, 1408
BmeT110I	CYCGRG	2 cut(s)	902, 1172
BmgBI	CACGTC	3 cut(s)	505, 568, 622
BmgT120I	GGNCC	7 cut(s)	184, 243, 741, 1015, 1284, 1323, 1408
BmiI	GGNNCC	5 cut(s)	742, 1114, 1285, 1300, 1324
BmrFI	CCNGG	6 cut(s)	160, 369, 832, 989, 1266, 1406
BmrI	ACTGGG	2 cut(s)	250, 1144
BmsI	GCATC	7 cut(s)	285, 509, 663, 783, 825, 1503, 1525
BmuI	ACTGGG	2 cut(s)	250, 1144
BpiI	GAAGAC	1 cut(s)	1216
BpmI	CTGGAG	3 cut(s)	515, 592, 1102
Bpu10I	CCTNAGC	2 cut(s)	61, 1158
BpuEI	CTTGAG	4 cut(s)	58, 108, 164, 1150
BpuMI	CCSGG	3 cut(s)	160, 369, 832
BsaAI	YACGTR	1 cut(s)	916
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	3 cut(s)	294, 492, 729
BsaI	GGTCTC	1 cut(s)	1196
BsaJI	CCNNGG	7 cut(s)	297, 487, 890, 988, 1026, 1235, 1264
BsaWI	WCCGGW	1 cut(s)	1477
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 680, 710
Bsc4I	CCNNNNNNNGG	8 cut(s)	159, 241, 367, 368, 738, 787, 830, 865
Bse118I	RCCGGY	4 cut(s)	509, 587, 1217, 1310
Bse1I	ACTGG	6 cut(s)	245, 532, 1079, 1085, 1150, 1464
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	989, 1266, 1406
BseDI	CCNNGG	7 cut(s)	297, 487, 890, 988, 1026, 1235, 1264
BseGI	GGATG	3 cut(s)	524, 552, 840
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	8 cut(s)	159, 241, 367, 368, 738, 787, 830, 865
BseMI	GCAATG	1 cut(s)	197
BseNI	ACTGG	6 cut(s)	245, 532, 1079, 1085, 1150, 1464
BseRI	GAGGAG	1 cut(s)	328
BseSI	GKGCMC	1 cut(s)	374
BseX3I	CGGCCG	1 cut(s)	484
BseXI	GCAGC	3 cut(s)	215, 892, 975
BsgI	GTGCAG	2 cut(s)	899, 916
Bsh1236I	CGCG	5 cut(s)	348, 489, 633, 749, 1044
Bsh1285I	CGRYCG	3 cut(s)	253, 346, 487
BshFI	GGCC	6 cut(s)	245, 288, 315, 486, 804, 1163
BshNI	GGYRCC	1 cut(s)	1298
BsiEI	CGRYCG	3 cut(s)	253, 346, 487
BsiHKAI	GWGCWC	4 cut(s)	44, 456, 1148, 1372
BsiHKCI	CYCGRG	2 cut(s)	902, 1172
BsiSI	CCGG	9 cut(s)	160, 368, 510, 588, 824, 831, 1218, 1311, 1478
BsiWI	CGTACG	1 cut(s)	1539
BslFI	GGGAC	4 cut(s)	160, 1109, 1253, 1297
BslI	CCNNNNNNNGG	8 cut(s)	159, 241, 367, 368, 738, 787, 830, 865
BsmAI	GTCTC	2 cut(s)	544, 1196
BsmBI	CGTCTC	1 cut(s)	544
BsmFI	GGGAC	4 cut(s)	160, 1109, 1253, 1297
BsmI	GAATGC	3 cut(s)	18, 151, 1394
BsnI	GGCC	6 cut(s)	245, 288, 315, 486, 804, 1163
Bso31I	GGTCTC	1 cut(s)	1196
BsoBI	CYCGRG	2 cut(s)	902, 1172
Bsp1286I	GDGCHC	7 cut(s)	44, 374, 405, 456, 1148, 1179, 1372
Bsp143I	GATC	4 cut(s)	318, 390, 750, 1566
Bsp19I	CCATGG	1 cut(s)	297
BspANI	GGCC	6 cut(s)	245, 288, 315, 486, 804, 1163
BspFNI	CGCG	5 cut(s)	348, 489, 633, 749, 1044
BspLI	GGNNCC	5 cut(s)	742, 1114, 1285, 1300, 1324
BspMI	ACCTGC	2 cut(s)	23, 829
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	1298
BspTNI	GGTCTC	1 cut(s)	1196
BsrBI	CCGCTC	1 cut(s)	1007
BsrDI	GCAATG	1 cut(s)	197
BsrFI	RCCGGY	4 cut(s)	509, 587, 1217, 1310
BsrI	ACTGG	6 cut(s)	245, 532, 1079, 1085, 1150, 1464
BssAI	RCCGGY	4 cut(s)	509, 587, 1217, 1310
BssECI	CCNNGG	7 cut(s)	297, 487, 890, 988, 1026, 1235, 1264
BssMI	GATC	4 cut(s)	318, 390, 750, 1566
BssNI	GRCGYC	3 cut(s)	294, 492, 729
BssT1I	CCWWGG	3 cut(s)	297, 1026, 1235
Bst2UI	CCWGG	3 cut(s)	989, 1266, 1406
Bst4CI	ACNGT	5 cut(s)	1210, 1244, 1288, 1367, 1539
Bst6I	CTCTTC	1 cut(s)	1418
BstACI	GRCGYC	3 cut(s)	294, 492, 729
BstAPI	GCANNNNNTGC	1 cut(s)	886
BstBAI	YACGTR	1 cut(s)	916
BstDEI	CTNAG	2 cut(s)	61, 1158
BstDSI	CCRYGG	2 cut(s)	297, 487
BstF5I	GGATG	3 cut(s)	524, 552, 840
BstFNI	CGCG	5 cut(s)	348, 489, 633, 749, 1044
BstH2I	RGCGCY	4 cut(s)	229, 672, 875, 969
BstHHI	GCGC	8 cut(s)	197, 228, 633, 671, 713, 874, 968, 1044
BstKTI	GATC	4 cut(s)	321, 393, 753, 1569
BstMAI	GTCTC	2 cut(s)	544, 1196
BstMBI	GATC	4 cut(s)	318, 390, 750, 1566
BstMCI	CGRYCG	3 cut(s)	253, 346, 487
BstNI	CCWGG	3 cut(s)	989, 1266, 1406
BstSCI	CCNGG	6 cut(s)	158, 367, 830, 987, 1264, 1404
BstSLI	GKGCMC	1 cut(s)	374
BstUI	CGCG	5 cut(s)	348, 489, 633, 749, 1044
BstV1I	GCAGC	3 cut(s)	215, 892, 975
BstV2I	GAAGAC	1 cut(s)	1216
BstX2I	RGATCY	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	1186
BstYI	RGATCY	1 cut(s)	318
BstZI	CGGCCG	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	1262
BsuRI	GGCC	6 cut(s)	245, 288, 315, 486, 804, 1163
BtgI	CCRYGG	2 cut(s)	297, 487
BtgZI	GCGATG	3 cut(s)	586, 1474, 1555
BtrI	CACGTC	3 cut(s)	505, 568, 622
BtsCI	GGATG	3 cut(s)	524, 552, 840
BtsI	GCAGTG	3 cut(s)	691, 944, 1321
BtsIMutI	CAGTG	5 cut(s)	691, 944, 1321, 1372, 1457
BveI	ACCTGC	2 cut(s)	23, 829
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	8 cut(s)	197, 228, 633, 671, 713, 874, 968, 1044
Cfr10I	RCCGGY	4 cut(s)	509, 587, 1217, 1310
Cfr13I	GGNCC	7 cut(s)	184, 243, 741, 1015, 1284, 1323, 1408
Cfr42I	CCGCGG	1 cut(s)	490
CseI	GACGC	4 cut(s)	302, 481, 487, 737
Csp6I	GTAC	9 cut(s)	131, 535, 706, 817, 949, 1000, 1153, 1299, 1540
CspCI	CAANNNNNGTGG	2 cut(s)	1026, 1061
CviAII	CATG	3 cut(s)	298, 430, 1141
CviQI	GTAC	9 cut(s)	131, 535, 706, 817, 949, 1000, 1153, 1299, 1540
DdeI	CTNAG	2 cut(s)	61, 1158
DpnI	GATC	4 cut(s)	320, 392, 752, 1568
DpnII	GATC	4 cut(s)	318, 390, 750, 1566
DraIII	CACNNNGTG	3 cut(s)	388, 919, 939
EaeI	YGGCCR	4 cut(s)	286, 313, 484, 802
EagI	CGGCCG	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	1418
EarI	CTCTTC	1 cut(s)	1418
EciI	GGCGGA	4 cut(s)	368, 412, 531, 1085
Ecl136II	GAGCTC	2 cut(s)	42, 454
EclXI	CGGCCG	1 cut(s)	484
Eco130I	CCWWGG	3 cut(s)	297, 1026, 1235
Eco147I	AGGCCT	1 cut(s)	1163
Eco24I	GRGCYC	4 cut(s)	44, 405, 456, 1179
Eco31I	GGTCTC	1 cut(s)	1196
Eco47I	GGWCC	6 cut(s)	184, 741, 1015, 1284, 1323, 1408
Eco52I	CGGCCG	1 cut(s)	484
Eco53kI	GAGCTC	2 cut(s)	42, 454
Eco72I	CACGTG	1 cut(s)	916
Eco88I	CYCGRG	2 cut(s)	902, 1172
EcoICRI	GAGCTC	2 cut(s)	42, 454
EcoO109I	RGGNCCY	1 cut(s)	1408
EcoRII	CCWGG	3 cut(s)	987, 1264, 1404
EcoT14I	CCWWGG	3 cut(s)	297, 1026, 1235
EcoT22I	ATGCAT	2 cut(s)	524, 1518
EcoT38I	GRGCYC	4 cut(s)	44, 405, 456, 1179
ErhI	CCWWGG	3 cut(s)	297, 1026, 1235
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	3 cut(s)	301, 433, 1144
FaqI	GGGAC	4 cut(s)	160, 1109, 1253, 1297
FatI	CATG	3 cut(s)	297, 429, 1140
FauI	CCCGC	5 cut(s)	361, 592, 626, 680, 1129
FbaI	TGATCA	1 cut(s)	1566
FokI	GGATG	3 cut(s)	531, 539, 847
FriOI	GRGCYC	4 cut(s)	44, 405, 456, 1179
GlaI	GCGC	8 cut(s)	196, 227, 632, 670, 712, 873, 967, 1043
GsuI	CTGGAG	3 cut(s)	515, 592, 1102
HaeII	RGCGCY	4 cut(s)	229, 672, 875, 969
HaeIII	GGCC	6 cut(s)	245, 288, 315, 486, 804, 1163
HapII	CCGG	9 cut(s)	160, 368, 510, 588, 824, 831, 1218, 1311, 1478
HgaI	GACGC	4 cut(s)	302, 481, 487, 737
HhaI	GCGC	8 cut(s)	197, 228, 633, 671, 713, 874, 968, 1044
Hin1I	GRCGYC	3 cut(s)	294, 492, 729
Hin1II	CATG	3 cut(s)	301, 433, 1144
Hin6I	GCGC	8 cut(s)	195, 226, 631, 669, 711, 872, 966, 1042
HinP1I	GCGC	8 cut(s)	195, 226, 631, 669, 711, 872, 966, 1042
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	5 cut(s)	335, 720, 994, 1256, 1474
HpaII	CCGG	9 cut(s)	160, 368, 510, 588, 824, 831, 1218, 1311, 1478
Hpy166II	GTNNAC	8 cut(s)	463, 502, 571, 744, 922, 1002, 1048, 1457
Hpy188I	TCNGA	4 cut(s)	343, 643, 1011, 1566
Hpy188III	TCNNGA	6 cut(s)	37, 125, 409, 472, 754, 1360
Hpy8I	GTNNAC	8 cut(s)	463, 502, 571, 744, 922, 1002, 1048, 1457
Hpy99I	CGWCG	9 cut(s)	203, 218, 485, 626, 647, 653, 719, 731, 788
HpyAV	CCTTC	2 cut(s)	1052, 1126
HpyCH4III	ACNGT	5 cut(s)	1210, 1244, 1288, 1367, 1539
HpyCH4IV	ACGT	5 cut(s)	504, 537, 567, 621, 915
HpyCH4V	TGCA	8 cut(s)	18, 522, 579, 838, 880, 897, 1388, 1516
HpyF3I	CTNAG	2 cut(s)	61, 1158
HpySE526I	ACGT	5 cut(s)	504, 537, 567, 621, 915
Hsp92I	GRCGYC	3 cut(s)	294, 492, 729
Hsp92II	CATG	3 cut(s)	301, 433, 1144
HspAI	GCGC	8 cut(s)	195, 226, 631, 669, 711, 872, 966, 1042
KpnI	GGTACC	1 cut(s)	1302
KroI	GCCGGC	1 cut(s)	587
KroNI	GCCGGC	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	1566
KspI	CCGCGG	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	318, 390, 750, 1566
LmnI	GCTCC	4 cut(s)	701, 1012, 1112, 1251
Lsp1109I	GCAGC	3 cut(s)	215, 892, 975
LweI	GCATC	7 cut(s)	285, 509, 663, 783, 825, 1503, 1525
MaeII	ACGT	5 cut(s)	504, 537, 567, 621, 915
MaeIII	GTNAC	7 cut(s)	328, 505, 841, 1033, 1210, 1288, 1334
MalI	GATC	4 cut(s)	320, 392, 752, 1568
MbiI	CCGCTC	1 cut(s)	1007
MboI	GATC	4 cut(s)	318, 390, 750, 1566
MboII	GAAGA	7 cut(s)	409, 1111, 1216, 1390, 1393, 1405, 1454
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	7 cut(s)	44, 374, 405, 456, 1148, 1179, 1372
MluCI	AATT	1 cut(s)	678
MlyI	GAGTC	3 cut(s)	329, 714, 1483
MmeI	TCCRAC	3 cut(s)	366, 666, 786
Mph1103I	ATGCAT	2 cut(s)	524, 1518
MroNI	GCCGGC	1 cut(s)	587
MseI	TTAA	2 cut(s)	26, 981
MslI	CAYNNNNRTG	1 cut(s)	833
MspA1I	CMGCKG	3 cut(s)	489, 1275, 1329
MspI	CCGG	9 cut(s)	160, 368, 510, 588, 824, 831, 1218, 1311, 1478
MspR9I	CCNGG	6 cut(s)	160, 369, 832, 989, 1266, 1406
Mva1269I	GAATGC	3 cut(s)	18, 151, 1394
MvaI	CCWGG	3 cut(s)	989, 1266, 1406
MvnI	CGCG	5 cut(s)	348, 489, 633, 749, 1044
NaeI	GCCGGC	1 cut(s)	589
NciI	CCSGG	3 cut(s)	160, 369, 832
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	318, 390, 750, 1566
NgoMIV	GCCGGC	1 cut(s)	587
NlaIII	CATG	3 cut(s)	301, 433, 1144
NlaIV	GGNNCC	5 cut(s)	742, 1114, 1285, 1300, 1324
NmeAIII	GCCGAG	1 cut(s)	780
NmuCI	GTSAC	6 cut(s)	328, 505, 841, 1033, 1210, 1334
NsiI	ATGCAT	2 cut(s)	524, 1518
PaeR7I	CTCGAG	1 cut(s)	1172
PaqCI	CACCTGC	2 cut(s)	23, 829
PceI	AGGCCT	1 cut(s)	1163
PcsI	WCGNNNNNNNCGW	5 cut(s)	456, 489, 723, 807, 1497
PctI	GAATGC	3 cut(s)	18, 151, 1394
PdiI	GCCGGC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	994, 1256
Pfl23II	CGTACG	1 cut(s)	1539
PleI	GAGTC	3 cut(s)	329, 714, 1482
PmaCI	CACGTG	1 cut(s)	916
PmlI	CACGTG	1 cut(s)	916
PpsI	GAGTC	3 cut(s)	329, 714, 1482
Ppu21I	YACGTR	1 cut(s)	916
PpuMI	RGGWCCY	1 cut(s)	1408
Psp124BI	GAGCTC	2 cut(s)	44, 456
Psp5II	RGGWCCY	1 cut(s)	1408
Psp6I	CCWGG	3 cut(s)	987, 1264, 1404
PspCI	CACGTG	1 cut(s)	916
PspGI	CCWGG	3 cut(s)	987, 1264, 1404
PspLI	CGTACG	1 cut(s)	1539
PspN4I	GGNNCC	5 cut(s)	742, 1114, 1285, 1300, 1324
PspPI	GGNCC	7 cut(s)	184, 243, 741, 1015, 1284, 1323, 1408
PspPPI	RGGWCCY	1 cut(s)	1408
PspXI	VCTCGAGB	1 cut(s)	1172
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	9 cut(s)	132, 536, 707, 818, 950, 1001, 1154, 1300, 1541
RsaNI	GTAC	9 cut(s)	131, 535, 706, 817, 949, 1000, 1153, 1299, 1540
RseI	CAYNNNNRTG	1 cut(s)	833
SacI	GAGCTC	2 cut(s)	44, 456
SacII	CCGCGG	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	26, 981
Sau3AI	GATC	4 cut(s)	318, 390, 750, 1566
Sau96I	GGNCC	7 cut(s)	184, 243, 741, 1015, 1284, 1323, 1408
ScaI	AGTACT	1 cut(s)	818
SchI	GAGTC	3 cut(s)	329, 714, 1483
ScrFI	CCNGG	6 cut(s)	160, 369, 832, 989, 1266, 1406
SduI	GDGCHC	7 cut(s)	44, 374, 405, 456, 1148, 1179, 1372
SfaNI	GCATC	7 cut(s)	285, 509, 663, 783, 825, 1503, 1525
Sfr274I	CTCGAG	1 cut(s)	1172
Sfr303I	CCGCGG	1 cut(s)	490
SgrAI	CRCCGGYG	2 cut(s)	509, 1217
SgrBI	CCGCGG	1 cut(s)	490
SinI	GGWCC	6 cut(s)	184, 741, 1015, 1284, 1323, 1408
SlaI	CTCGAG	1 cut(s)	1172
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	5 cut(s)	37, 123, 179, 1165, 1172
SmoI	CTYRAG	5 cut(s)	37, 123, 179, 1165, 1172
Sse9I	AATT	1 cut(s)	678
SseBI	AGGCCT	1 cut(s)	1163
SstI	GAGCTC	2 cut(s)	44, 456
StuI	AGGCCT	1 cut(s)	1163
StyD4I	CCNGG	6 cut(s)	158, 367, 830, 987, 1264, 1404
StyI	CCWWGG	3 cut(s)	297, 1026, 1235
TaaI	ACNGT	5 cut(s)	1210, 1244, 1288, 1367, 1539
TaiI	ACGT	5 cut(s)	507, 540, 570, 624, 918
TaqI	TCGA	5 cut(s)	213, 450, 480, 726, 1173
TasI	AATT	1 cut(s)	678
TatI	WGTACW	2 cut(s)	130, 816
TauI	GCSGC	8 cut(s)	276, 315, 489, 492, 516, 963, 1278, 1332
TfiI	GAWTC	2 cut(s)	994, 1256
Tru1I	TTAA	2 cut(s)	26, 981
Tru9I	TTAA	2 cut(s)	26, 981
TscAI	CASTG	5 cut(s)	698, 944, 1321, 1372, 1464
TseFI	GTSAC	6 cut(s)	328, 505, 841, 1033, 1210, 1334
TseI	GCWGC	3 cut(s)	228, 880, 963
Tsp45I	GTSAC	6 cut(s)	328, 505, 841, 1033, 1210, 1334
TspGWI	ACGGA	2 cut(s)	732, 1103
TspRI	CASTG	5 cut(s)	698, 944, 1321, 1372, 1464
VpaK11BI	GGWCC	6 cut(s)	184, 741, 1015, 1284, 1323, 1408
XapI	RAATTY	1 cut(s)	678
XhoI	CTCGAG	1 cut(s)	1172
ZrmI	AGTACT	1 cut(s)	818
Zsp2I	ATGCAT	2 cut(s)	524, 1518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.