Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006501

Physical Location & Seq

Genomic Coordinates Reverse (-)

41111163 .. 41113164

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCATTCACGGCCGCCGCTTTCGTCTCCCCGCCCGGACTCGTCGTCCGCTGCATGAACAACGTGCCTGACAGCACAGTCTACGGCGGCCCAAAGTCACAAAGCCCAGACCGGAGAGTCACCGTCACTCAAATAAAGCAGAAGCACAGGAAAGGCGAGCCCGTCACCGCCGTCACCGCCTACGACTACCCCTCGGCGGTGCACTTGGACTCGGCCGGGATAAACATTGCCGTGGTCGGCGACTCGGCCGCGATGGTTGTTCACGGATATGATACCACTCTCCCCATAACGCTGGAGGAAATGCTCGTCCACTGCCGAGCGGTGGCGCGTGGGGCCAACCGACCAAGCACCCGCTTTTGGTTGCGGACTTGCCGTTCGGATTCTACGAGTCTAGCTCCATTCAGTTTCGAATATGAGCAGGCTATCGATTCAGCGATGAGAATTTTAAAGGAAGGCGCAATGGATGCAGCTATTAGCGTTCTCGGGGGTTTTAGGCCACAAGGAAGGAATGTGGCTAGTGCTGTAAAGATTGTGGAGACAGCGCTGGCTTTGCAAGAAGCCGGGTGCTTTGCAATTGTATTGGAATGCGTGCCACCACTAGTGGCAGCTGCTGCAACATCTGCTCTTCAGATTCCTACAATTGGCATTGGAGCAGGGTCTTTTTGCAGTGGGCAGGTGCTAGTTTACCATGATCTTCTTGGAATGATGCAGCACCCACATCATGCAAAGGTTACCCCAAAATTCTGTAAGCAATATGCACATGTTGGAGAAGTCATCAACAAAGCTCTAGTAGACTACAAGGAAGAAGTCACCAGTGGTGCGTTTCCAGGCGCTTCCCATAGCCCATATAAAATCAATGCTGCTGATGTTGATGGCTTTGTTAGTGAGTTACGAAGGATGGGTTTGGACAAGCTAGGCAGCATCTGCGGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0009825 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045229 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

311

Amino Acids

33.02

Weight (kDa)

7.63

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_transf	PF02548	39 - 156	1.5e-26	Ketopantoate hydroxymethyltransferase
Pantoate_transf	PF02548	156 - 277	1e-41	Ketopantoate hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54920 AT5G04310 AT5G04310 AT5G04310
fragaria_vesca	FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400
malus_domestica	MD01G1100600.v1.1
prunus_persica	Prupe.2G206100_v2.0.a1 Prupe.2G206100_v2.0.a1
pyrus_communis	pycom01g12750 pycom07g16230
rosa_chinensis	RchiOBHm_Chr1g0362211
rosa_laevigata	RLG00000027666
rosa_multiflora	Rmu_co8314571.1_g000001 Rmu_sc0001237.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294430
rosa_rugosa	Rorug01G0295600 Rorug01G0295700 Rorug01G0295800.1
rosa_samantha	Rh1AG305100 Rh1BG267900 Rh1CG286100 Rh1DG297900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	664
AasI	GACNNNNNNGTC	2 cut(s)	77, 116
Acc36I	ACCTGC	1 cut(s)	664
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	2 cut(s)	81, 792
AccII	CGCG	2 cut(s)	251, 328
AcoI	YGGCCR	3 cut(s)	12, 213, 246
AcsI	RAATTY	2 cut(s)	441, 740
AcuI	CTGAAG	1 cut(s)	611
AfeI	AGCGCT	1 cut(s)	543
AfiI	CCNNNNNNNGG	4 cut(s)	196, 322, 357, 641
AflIII	ACRYGT	1 cut(s)	760
AhdI	GACNNNNNGTC	1 cut(s)	44
AhlI	ACTAGT	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	826
AloI	GAACNNNNNNTCC	2 cut(s)	358, 390
AluBI	AGCT	5 cut(s)	395, 470, 608, 785, 913
AluI	AGCT	5 cut(s)	395, 470, 608, 785, 913
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	31, 530
Alw44I	GTGCAC	1 cut(s)	200
AlwNI	CAGNNNCTG	2 cut(s)	611, 924
Ama87I	CYCGRG	1 cut(s)	482
Aor51HI	AGCGCT	1 cut(s)	543
AoxI	GGCC	6 cut(s)	12, 88, 213, 246, 333, 494
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	8 cut(s)	51, 467, 605, 608, 611, 709, 860, 918
ApoI	RAATTY	2 cut(s)	441, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AspLEI	GCGC	4 cut(s)	328, 458, 544, 833
AspS9I	GGNCC	2 cut(s)	89, 333
AsuC2I	CCSGG	3 cut(s)	36, 217, 562
AsuHPI	GGTGA	4 cut(s)	112, 157, 166, 802
AsuII	TTCGAA	1 cut(s)	408
AvaI	CYCGRG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	8 cut(s)	38, 479, 595, 598, 617, 721, 847, 930
BccI	CCATC	3 cut(s)	247, 866, 892
BceAI	ACGGC	5 cut(s)	27, 100, 155, 215, 357
BciT130I	CCWGG	1 cut(s)	828
BcnI	CCSGG	3 cut(s)	36, 217, 562
BcoDI	GTCTC	2 cut(s)	31, 530
BcuI	ACTAGT	1 cut(s)	598
BfaI	CTAG	6 cut(s)	392, 516, 599, 680, 788, 914
BfoI	RGCGCY	2 cut(s)	545, 834
BfuAI	ACCTGC	1 cut(s)	664
Bme1390I	CCNGG	4 cut(s)	36, 217, 562, 828
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	89, 333
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	4 cut(s)	36, 217, 562, 828
BmsI	GCATC	3 cut(s)	454, 696, 930
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	408
BpuMI	CCSGG	3 cut(s)	36, 217, 562
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	192, 231
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 322, 357, 641
Bse1I	ACTGG	1 cut(s)	813
Bse3DI	GCAATG	2 cut(s)	225, 465
BseBI	CCWGG	1 cut(s)	828
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	192, 231
BseGI	GGATG	2 cut(s)	469, 903
BseLI	CCNNNNNNNGG	4 cut(s)	196, 322, 357, 641
BseMI	GCAATG	2 cut(s)	225, 465
BseNI	ACTGG	1 cut(s)	813
BseSI	GKGCMC	1 cut(s)	204
BseX3I	CGGCCG	3 cut(s)	12, 213, 246
BseXI	GCAGC	8 cut(s)	38, 479, 595, 598, 617, 721, 847, 930
Bsh1236I	CGCG	2 cut(s)	251, 328
Bsh1285I	CGRYCG	3 cut(s)	15, 216, 249
BshFI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 496
BshVI	ATCGAT	1 cut(s)	426
BsiEI	CGRYCG	3 cut(s)	15, 216, 249
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	4 cut(s)	36, 112, 216, 561
BslI	CCNNNNNNNGG	4 cut(s)	196, 322, 357, 641
BsmAI	GTCTC	2 cut(s)	31, 530
BsmBI	CGTCTC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	5, 590
BsnI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 496
BsoBI	CYCGRG	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	162, 204
Bsp143I	GATC	1 cut(s)	691
BspANI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 496
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	251, 328
BspLI	GGNNCC	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	664
BspQI	GCTCTTC	1 cut(s)	630
BspT104I	TTCGAA	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	225, 465
BsrI	ACTGG	1 cut(s)	813
BssECI	CCNNGG	2 cut(s)	192, 231
BssMI	GATC	1 cut(s)	691
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	2 cut(s)	79, 124
Bst6I	CTCTTC	1 cut(s)	630
BstAPI	GCANNNNNTGC	4 cut(s)	464, 611, 620, 924
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	4 cut(s)	158, 420, 546, 590
BstDSI	CCRYGG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	730
BstF5I	GGATG	2 cut(s)	469, 903
BstFNI	CGCG	2 cut(s)	251, 328
BstH2I	RGCGCY	2 cut(s)	545, 834
BstHHI	GCGC	4 cut(s)	328, 458, 544, 833
BstKTI	GATC	1 cut(s)	694
BstMAI	GTCTC	2 cut(s)	31, 530
BstMBI	GATC	1 cut(s)	691
BstMCI	CGRYCG	3 cut(s)	15, 216, 249
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 176, 332, 464, 550, 611, 620, 924, 927
BstNI	CCWGG	1 cut(s)	828
BstNSI	RCATGY	1 cut(s)	764
BstPI	GGTNACC	1 cut(s)	730
BstSCI	CCNGG	4 cut(s)	34, 215, 560, 826
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	2 cut(s)	251, 328
BstV1I	GCAGC	8 cut(s)	38, 479, 595, 598, 617, 721, 847, 930
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstZI	CGGCCG	3 cut(s)	12, 213, 246
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 496
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	2 cut(s)	266, 449
BtsCI	GGATG	2 cut(s)	469, 903
BtsI	GCAGTG	2 cut(s)	310, 673
BtsIMutI	CAGTG	3 cut(s)	310, 673, 820
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	4 cut(s)	158, 420, 546, 590
CaiI	CAGNNNCTG	2 cut(s)	611, 924
CfoI	GCGC	4 cut(s)	328, 458, 544, 833
Cfr13I	GGNCC	2 cut(s)	89, 333
ClaI	ATCGAT	1 cut(s)	426
CviAII	CATG	4 cut(s)	55, 689, 722, 761
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
DraI	TTTAAA	1 cut(s)	447
DrdI	GACNNNNNNGTC	2 cut(s)	77, 116
DriI	GACNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	2 cut(s)	77, 116
EaeI	YGGCCR	3 cut(s)	12, 213, 246
EagI	CGGCCG	3 cut(s)	12, 213, 246
Eam1104I	CTCTTC	1 cut(s)	630
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	630
EclXI	CGGCCG	3 cut(s)	12, 213, 246
Eco24I	GRGCYC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	543
Eco52I	CGGCCG	3 cut(s)	12, 213, 246
Eco57I	CTGAAG	1 cut(s)	611
Eco88I	CYCGRG	1 cut(s)	482
Eco91I	GGTNACC	1 cut(s)	730
EcoO65I	GGTNACC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	58, 692, 725, 764
FatI	CATG	4 cut(s)	54, 688, 721, 760
FauI	CCCGC	2 cut(s)	39, 359
FblI	GTMKAC	2 cut(s)	81, 792
FokI	GGATG	2 cut(s)	476, 910
FriOI	GRGCYC	1 cut(s)	162
FspBI	CTAG	6 cut(s)	392, 516, 599, 680, 788, 914
GlaI	GCGC	4 cut(s)	327, 457, 543, 832
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	2 cut(s)	545, 834
HaeIII	GGCC	6 cut(s)	14, 90, 215, 248, 335, 496
HapII	CCGG	4 cut(s)	36, 112, 216, 561
HhaI	GCGC	4 cut(s)	328, 458, 544, 833
Hin1II	CATG	4 cut(s)	58, 692, 725, 764
Hin6I	GCGC	4 cut(s)	326, 456, 542, 831
HinP1I	GCGC	4 cut(s)	326, 456, 542, 831
HinfI	GANTC	8 cut(s)	39, 117, 209, 242, 380, 388, 428, 631
HpaII	CCGG	4 cut(s)	36, 112, 216, 561
HphI	GGTGA	4 cut(s)	112, 157, 166, 802
Hpy166II	GTNNAC	6 cut(s)	82, 202, 262, 310, 685, 793
Hpy188I	TCNGA	2 cut(s)	379, 630
Hpy8I	GTNNAC	6 cut(s)	82, 202, 262, 310, 685, 793
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	446, 498, 888
HpyCH4III	ACNGT	2 cut(s)	79, 124
HpyCH4IV	ACGT	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 176, 332, 464, 550, 611, 620, 924, 927
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	58, 692, 725, 764
HspAI	GCGC	4 cut(s)	326, 456, 542, 831
Kzo9I	GATC	1 cut(s)	691
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	2 cut(s)	400, 650
Lsp1109I	GCAGC	8 cut(s)	38, 479, 595, 598, 617, 721, 847, 930
LweI	GCATC	3 cut(s)	454, 696, 930
MaeI	CTAG	6 cut(s)	392, 516, 599, 680, 788, 914
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	8 cut(s)	96, 118, 124, 163, 172, 730, 808, 888
MalI	GATC	1 cut(s)	693
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	1 cut(s)	691
MboII	GAAGA	3 cut(s)	617, 686, 815
MfeI	CAATTG	2 cut(s)	573, 639
MhlI	GDGCHC	2 cut(s)	162, 204
MluCI	AATT	4 cut(s)	441, 573, 639, 740
MlyI	GAGTC	5 cut(s)	33, 126, 203, 236, 397
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	2 cut(s)	202, 289
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	2 cut(s)	230, 267
MspA1I	CMGCKG	2 cut(s)	51, 608
MspI	CCGG	4 cut(s)	36, 112, 216, 561
MspR9I	CCNGG	4 cut(s)	36, 217, 562, 828
MunI	CAATTG	2 cut(s)	573, 639
Mva1269I	GAATGC	2 cut(s)	5, 590
MvaI	CCWGG	1 cut(s)	828
MvnI	CGCG	2 cut(s)	251, 328
MwoI	GCNNNNNNNGC	9 cut(s)	11, 176, 332, 464, 550, 611, 620, 924, 927
NciI	CCSGG	3 cut(s)	36, 217, 562
NdeII	GATC	1 cut(s)	691
NlaIII	CATG	4 cut(s)	58, 692, 725, 764
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	4 cut(s)	173, 191, 224, 341
NmuCI	GTSAC	6 cut(s)	96, 118, 124, 163, 172, 808
NspI	RCATGY	1 cut(s)	764
NspV	TTCGAA	1 cut(s)	408
PaqCI	CACCTGC	1 cut(s)	664
PciI	ACATGT	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PctI	GAATGC	2 cut(s)	5, 590
PfeI	GAWTC	3 cut(s)	380, 428, 631
PleI	GAGTC	5 cut(s)	33, 125, 203, 236, 396
PpsI	GAGTC	5 cut(s)	33, 125, 203, 236, 396
PscI	ACATGT	1 cut(s)	760
Psp6I	CCWGG	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	826
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	89, 333
PstNI	CAGNNNCTG	2 cut(s)	611, 924
PvuII	CAGCTG	1 cut(s)	608
RseI	CAYNNNNRTG	2 cut(s)	230, 267
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	446
Sau3AI	GATC	1 cut(s)	691
Sau96I	GGNCC	2 cut(s)	89, 333
SchI	GAGTC	5 cut(s)	33, 126, 203, 236, 397
ScrFI	CCNGG	4 cut(s)	36, 217, 562, 828
SduI	GDGCHC	2 cut(s)	162, 204
SetI	ASST	8 cut(s)	66, 397, 472, 610, 678, 732, 787, 915
SfaNI	GCATC	3 cut(s)	454, 696, 930
SfuI	TTCGAA	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	230, 267
SpeI	ACTAGT	1 cut(s)	598
Sse9I	AATT	4 cut(s)	441, 573, 639, 740
SspMI	CTAG	6 cut(s)	392, 516, 599, 680, 788, 914
StyD4I	CCNGG	4 cut(s)	34, 215, 560, 826
TaaI	ACNGT	2 cut(s)	79, 124
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	408, 426
TasI	AATT	4 cut(s)	441, 573, 639, 740
TauI	GCSGC	6 cut(s)	17, 20, 90, 251, 930, 933
TfiI	GAWTC	3 cut(s)	380, 428, 631
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	3 cut(s)	317, 673, 820
TseFI	GTSAC	6 cut(s)	96, 118, 124, 163, 172, 808
TseI	GCWGC	8 cut(s)	51, 467, 605, 608, 611, 709, 860, 918
Tsp45I	GTSAC	6 cut(s)	96, 118, 124, 163, 172, 808
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	317, 673, 820
VneI	GTGCAC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	441, 740
XceI	RCATGY	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XmiI	GTMKAC	2 cut(s)	81, 792
XspI	CTAG	6 cut(s)	392, 516, 599, 680, 788, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.