Rmu_co8314571.1_g000001

Pectate lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8314571.1
Physical Location & Seq
Reverse (-)
8 .. 883
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8314571.1_g000001.1.cds

Sequence Viewer

Length: 876 bp
atgctgtccctcaaggaccagcaatgcgccgtcggcaaccccatcgacgactgctggcgctgcggctccaactgggccgacaaccgccagaagctcgccgactgcggcatcggcttcggccaagacgccatgggtggcaaaggcggccagatctacgtcgtcaccgactcctccgaccgcgaccccgccaacccaactccgggcactctccgccacgccgtgatccaaaccgagcccctctggatcatcttctccgccgacatgaccatcaagctcaaagtcgagctcatcgtcaacagcttcaagaccatcgacggccgcggcgtcagcgtccacgtcaccggcggcggatgcataaccctccagtacgtctccaacgtcatcatccacaacattcacgtccaccactgcaagccggccggtaacaccaacgtcgcctccagccccacccacgtcggctggcgcgggaagtccgacggcgacggcatctccctcttcagcgcccgcaaaatttggatcgatcactgctccctgtcctactgcgccgacggactcatcgacgccataatggggtccaccggaatcactatttccaacaaccactttgcgcaccacgacgaggtgatgcttctcggccacgacgataagtactcgccggacaccgggatgcaggtgacgatcgcgttcaaccacttcggggaggcgctggtgcagcgtatgcctcggtgcaggcgcgggtatattcacgtggtgaacaatgacttcacgcagtgggagatgtacgccatcggcggcagcgccaaccccaccattaacagccaggggaatcggtacactgctccgatgaaccagaacgccaaggaggtaaaatcgtaa

Protein Analysis

291

Amino Acids

31.75

Weight (kDa)

6.52

Isoelectric Point (pI)

17.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 661
Acc16I TGCGCA 1 cut(s) 609
Acc36I ACCTGC 1 cut(s) 661
AccII CGCG 5 cut(s) 180, 321, 465, 683, 735
AclWI GGATC 3 cut(s) 217, 251, 524
AcoI YGGCCR 5 cut(s) 118, 145, 316, 417, 634
AcsI RAATTY 1 cut(s) 510
AcuI CTGAAG 1 cut(s) 481
AcvI CACGTG 1 cut(s) 748
AcyI GRCGYC 3 cut(s) 126, 324, 561
AdeI CACNNNGTG 3 cut(s) 220, 751, 771
AfaI GTAC 4 cut(s) 368, 650, 782, 833
AfiI CCNNNNNNNGG 6 cut(s) 199, 200, 570, 619, 662, 697
AgsI TTSAA 2 cut(s) 304, 688
AjiI CACGTC 3 cut(s) 337, 400, 454
AjnI CCWGG 1 cut(s) 819
AluBI AGCT 4 cut(s) 94, 274, 286, 300
AluI AGCT 4 cut(s) 94, 274, 286, 300
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 3 cut(s) 217, 251, 524
AoxI GGCC 6 cut(s) 75, 118, 145, 316, 417, 634
ApeKI GCWGC 3 cut(s) 60, 712, 795
ApoI RAATTY 1 cut(s) 510
AspLEI GCGC 9 cut(s) 29, 60, 465, 503, 545, 610, 706, 735, 800
AspS9I GGNCC 3 cut(s) 16, 75, 573
AsuC2I CCSGG 2 cut(s) 201, 664
AsuHPI GGTGA 5 cut(s) 154, 331, 634, 685, 763
AvaII GGWCC 2 cut(s) 16, 573
BaeGI GKGCMC 1 cut(s) 206
BanII GRGCYC 2 cut(s) 237, 288
BbrPI CACGTG 1 cut(s) 748
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 47, 724, 807
BccI CCATC 4 cut(s) 50, 275, 317, 794
BceAI ACGGC 5 cut(s) 14, 203, 331, 493, 499
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 97, 131
BciT130I CCWGG 1 cut(s) 821
BcnI CCSGG 2 cut(s) 201, 664
BcoDI GTCTC 1 cut(s) 376
BfoI RGCGCY 4 cut(s) 61, 504, 707, 801
BfuAI ACCTGC 1 cut(s) 661
BglII AGATCT 1 cut(s) 150
BmcAI AGTACT 1 cut(s) 650
Bme1390I CCNGG 3 cut(s) 201, 664, 821
Bme18I GGWCC 2 cut(s) 16, 573
BmgBI CACGTC 3 cut(s) 337, 400, 454
BmgT120I GGNCC 3 cut(s) 16, 75, 573
BmiI GGNNCC 2 cut(s) 67, 574
BmrFI CCNGG 3 cut(s) 201, 664, 821
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 5 cut(s) 117, 341, 495, 615, 657
BmuI ACTGGG 1 cut(s) 82
BpmI CTGGAG 2 cut(s) 347, 424
BpuMI CCSGG 2 cut(s) 201, 664
Bsa29I ATCGAT 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 748
BsaHI GRCGYC 3 cut(s) 126, 324, 561
BsaJI CCNNGG 5 cut(s) 129, 319, 722, 820, 858
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 4 cut(s) 422, 452, 473, 503
Bsc4I CCNNNNNNNGG 6 cut(s) 199, 200, 570, 619, 662, 697
Bse118I RCCGGY 3 cut(s) 341, 415, 419
Bse1I ACTGG 2 cut(s) 77, 364
Bse3DI GCAATG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 821
BseCI ATCGAT 1 cut(s) 519
BseDI CCNNGG 5 cut(s) 129, 319, 722, 820, 858
BseGI GGATG 3 cut(s) 356, 384, 672
BseLI CCNNNNNNNGG 6 cut(s) 199, 200, 570, 619, 662, 697
BseMI GCAATG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 77, 364
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 206
BseX3I CGGCCG 2 cut(s) 316, 417
BseXI GCAGC 3 cut(s) 47, 724, 807
BsgI GTGCAG 2 cut(s) 731, 748
Bsh1236I CGCG 5 cut(s) 180, 321, 465, 683, 735
Bsh1285I CGRYCG 4 cut(s) 178, 319, 420, 681
BshFI GGCC 6 cut(s) 77, 120, 147, 318, 419, 636
BshVI ATCGAT 1 cut(s) 519
BsiEI CGRYCG 4 cut(s) 178, 319, 420, 681
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 7 cut(s) 200, 342, 416, 420, 579, 656, 663
BslI CCNNNNNNNGG 6 cut(s) 199, 200, 570, 619, 662, 697
BsmAI GTCTC 1 cut(s) 376
BsmBI CGTCTC 1 cut(s) 376
BsnI GGCC 6 cut(s) 77, 120, 147, 318, 419, 636
Bsp1286I GDGCHC 3 cut(s) 206, 237, 288
Bsp143I GATC 6 cut(s) 150, 222, 243, 516, 520, 678
Bsp19I CCATGG 1 cut(s) 129
BspANI GGCC 6 cut(s) 77, 120, 147, 318, 419, 636
BspDI ATCGAT 1 cut(s) 519
BspFNI CGCG 5 cut(s) 180, 321, 465, 683, 735
BspLI GGNNCC 2 cut(s) 67, 574
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 3 cut(s) 217, 251, 524
BsrDI GCAATG 1 cut(s) 29
BsrFI RCCGGY 3 cut(s) 341, 415, 419
BsrI ACTGG 2 cut(s) 77, 364
BssAI RCCGGY 3 cut(s) 341, 415, 419
BssECI CCNNGG 5 cut(s) 129, 319, 722, 820, 858
BssMI GATC 6 cut(s) 150, 222, 243, 516, 520, 678
BssNI GRCGYC 3 cut(s) 126, 324, 561
BssT1I CCWWGG 2 cut(s) 129, 858
Bst2UI CCWGG 1 cut(s) 821
Bst6I CTCTTC 1 cut(s) 500
BstACI GRCGYC 3 cut(s) 126, 324, 561
BstAPI GCANNNNNTGC 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 7 cut(s) 56, 96, 413, 417, 461, 505, 731
BstDSI CCRYGG 2 cut(s) 129, 319
BstF5I GGATG 3 cut(s) 356, 384, 672
BstFNI CGCG 5 cut(s) 180, 321, 465, 683, 735
BstH2I RGCGCY 4 cut(s) 61, 504, 707, 801
BstHHI GCGC 9 cut(s) 29, 60, 465, 503, 545, 610, 706, 735, 800
BstKTI GATC 6 cut(s) 153, 225, 246, 519, 523, 681
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 6 cut(s) 150, 222, 243, 516, 520, 678
BstMCI CGRYCG 4 cut(s) 178, 319, 420, 681
BstMWI GCNNNNNNNGC 9 cut(s) 33, 60, 111, 144, 210, 327, 351, 712, 718
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 199, 662, 819
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 5 cut(s) 180, 321, 465, 683, 735
BstV1I GCAGC 3 cut(s) 47, 724, 807
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BstZI CGGCCG 2 cut(s) 316, 417
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 6 cut(s) 77, 120, 147, 318, 419, 636
BsuTUI ATCGAT 1 cut(s) 519
BtgI CCRYGG 2 cut(s) 129, 319
BtrI CACGTC 3 cut(s) 337, 400, 454
BtsCI GGATG 3 cut(s) 356, 384, 672
BtsI GCAGTG 4 cut(s) 406, 523, 776, 834
BtsIMutI CAGTG 4 cut(s) 406, 523, 776, 834
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 7 cut(s) 56, 96, 413, 417, 461, 505, 731
CfoI GCGC 9 cut(s) 29, 60, 465, 503, 545, 610, 706, 735, 800
Cfr10I RCCGGY 3 cut(s) 341, 415, 419
Cfr13I GGNCC 3 cut(s) 16, 75, 573
Cfr42I CCGCGG 1 cut(s) 322
ClaI ATCGAT 1 cut(s) 519
CseI GACGC 4 cut(s) 134, 313, 319, 569
Csp6I GTAC 4 cut(s) 367, 649, 781, 832
CviAII CATG 2 cut(s) 130, 262
CviQI GTAC 4 cut(s) 367, 649, 781, 832
DpnI GATC 6 cut(s) 152, 224, 245, 518, 522, 680
DpnII GATC 6 cut(s) 150, 222, 243, 516, 520, 678
DraIII CACNNNGTG 3 cut(s) 220, 751, 771
EaeI YGGCCR 5 cut(s) 118, 145, 316, 417, 634
EagI CGGCCG 2 cut(s) 316, 417
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
EciI GGCGGA 3 cut(s) 200, 244, 363
Ecl136II GAGCTC 1 cut(s) 286
EclXI CGGCCG 2 cut(s) 316, 417
Eco130I CCWWGG 2 cut(s) 129, 858
Eco24I GRGCYC 2 cut(s) 237, 288
Eco47I GGWCC 2 cut(s) 16, 573
Eco52I CGGCCG 2 cut(s) 316, 417
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 481
Eco72I CACGTG 1 cut(s) 748
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 2 cut(s) 129, 858
EcoT22I ATGCAT 1 cut(s) 356
EcoT38I GRGCYC 2 cut(s) 237, 288
ErhI CCWWGG 2 cut(s) 129, 858
Esp3I CGTCTC 1 cut(s) 376
FaeI CATG 2 cut(s) 133, 265
FaiI YATR 6 cut(s) 131, 263, 356, 566, 719, 741
FatI CATG 2 cut(s) 129, 261
FauI CCCGC 4 cut(s) 193, 458, 512, 728
FokI GGATG 3 cut(s) 363, 371, 679
FriOI GRGCYC 2 cut(s) 237, 288
FspI TGCGCA 1 cut(s) 609
GlaI GCGC 9 cut(s) 28, 59, 464, 502, 544, 609, 705, 734, 799
GsuI CTGGAG 2 cut(s) 347, 424
HaeII RGCGCY 4 cut(s) 61, 504, 707, 801
HaeIII GGCC 6 cut(s) 77, 120, 147, 318, 419, 636
HapII CCGG 7 cut(s) 200, 342, 416, 420, 579, 656, 663
HgaI GACGC 4 cut(s) 134, 313, 319, 569
HhaI GCGC 9 cut(s) 29, 60, 465, 503, 545, 610, 706, 735, 800
Hin1I GRCGYC 3 cut(s) 126, 324, 561
Hin1II CATG 2 cut(s) 133, 265
Hin6I GCGC 9 cut(s) 27, 58, 463, 501, 543, 608, 704, 733, 798
HinP1I GCGC 9 cut(s) 27, 58, 463, 501, 543, 608, 704, 733, 798
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 4 cut(s) 167, 552, 582, 826
HpaII CCGG 7 cut(s) 200, 342, 416, 420, 579, 656, 663
HphI GGTGA 5 cut(s) 154, 331, 634, 685, 763
Hpy166II GTNNAC 6 cut(s) 295, 334, 403, 576, 754, 834
Hpy188I TCNGA 3 cut(s) 175, 475, 843
Hpy188III TCNNGA 2 cut(s) 241, 304
Hpy8I GTNNAC 6 cut(s) 295, 334, 403, 576, 754, 834
HpyCH4IV ACGT 8 cut(s) 156, 336, 369, 378, 399, 432, 453, 747
HpyCH4V TGCA 5 cut(s) 354, 411, 670, 712, 729
HpyF10VI GCNNNNNNNGC 9 cut(s) 33, 60, 111, 144, 210, 327, 351, 712, 718
HpySE526I ACGT 8 cut(s) 156, 336, 369, 378, 399, 432, 453, 747
Hsp92I GRCGYC 3 cut(s) 126, 324, 561
Hsp92II CATG 2 cut(s) 133, 265
HspAI GCGC 9 cut(s) 27, 58, 463, 501, 543, 608, 704, 733, 798
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
KspI CCGCGG 1 cut(s) 322
Kzo9I GATC 6 cut(s) 150, 222, 243, 516, 520, 678
LmnI GCTCC 3 cut(s) 71, 533, 844
Lsp1109I GCAGC 3 cut(s) 47, 724, 807
LweI GCATC 5 cut(s) 117, 341, 495, 615, 657
MaeII ACGT 8 cut(s) 156, 336, 369, 378, 399, 432, 453, 747
MaeIII GTNAC 4 cut(s) 160, 337, 422, 673
MalI GATC 6 cut(s) 152, 224, 245, 518, 522, 680
MboI GATC 6 cut(s) 150, 222, 243, 516, 520, 678
MboII GAAGA 2 cut(s) 241, 487
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 3 cut(s) 206, 237, 288
MluCI AATT 1 cut(s) 510
MlyI GAGTC 2 cut(s) 161, 546
MmeI TCCRAC 5 cut(s) 93, 198, 399, 498, 618
Mph1103I ATGCAT 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 415
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 7 cut(s) 200, 342, 416, 420, 579, 656, 663
MspR9I CCNGG 3 cut(s) 201, 664, 821
MvaI CCWGG 1 cut(s) 821
MvnI CGCG 5 cut(s) 180, 321, 465, 683, 735
MwoI GCNNNNNNNGC 9 cut(s) 33, 60, 111, 144, 210, 327, 351, 712, 718
NaeI GCCGGC 1 cut(s) 417
NciI CCSGG 2 cut(s) 201, 664
NcoI CCATGG 1 cut(s) 129
NdeII GATC 6 cut(s) 150, 222, 243, 516, 520, 678
NgoMIV GCCGGC 1 cut(s) 415
NlaIII CATG 2 cut(s) 133, 265
NlaIV GGNNCC 2 cut(s) 67, 574
NmeAIII GCCGAG 1 cut(s) 612
NmuCI GTSAC 3 cut(s) 160, 337, 673
NsbI TGCGCA 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 356
PaqCI CACCTGC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 6 cut(s) 162, 288, 321, 375, 555, 639
PdiI GCCGGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 582, 826
Ple19I CGATCG 1 cut(s) 681
PleI GAGTC 2 cut(s) 161, 546
PmaCI CACGTG 1 cut(s) 748
PmlI CACGTG 1 cut(s) 748
PpsI GAGTC 2 cut(s) 161, 546
Ppu21I YACGTR 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 819
PspCI CACGTG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 2 cut(s) 67, 574
PspPI GGNCC 3 cut(s) 16, 75, 573
PsuI RGATCY 1 cut(s) 150
PvuI CGATCG 1 cut(s) 681
RsaI GTAC 4 cut(s) 368, 650, 782, 833
RsaNI GTAC 4 cut(s) 367, 649, 781, 832
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 1 cut(s) 288
SacII CCGCGG 1 cut(s) 322
SaqAI TTAA 1 cut(s) 813
Sau3AI GATC 6 cut(s) 150, 222, 243, 516, 520, 678
Sau96I GGNCC 3 cut(s) 16, 75, 573
ScaI AGTACT 1 cut(s) 650
SchI GAGTC 2 cut(s) 161, 546
ScrFI CCNGG 3 cut(s) 201, 664, 821
SduI GDGCHC 3 cut(s) 206, 237, 288
SfaNI GCATC 5 cut(s) 117, 341, 495, 615, 657
Sfr303I CCGCGG 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 341
SgrBI CCGCGG 1 cut(s) 322
SinI GGWCC 2 cut(s) 16, 573
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 510
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 199, 662, 819
StyI CCWWGG 2 cut(s) 129, 858
TaiI ACGT 8 cut(s) 159, 339, 372, 381, 402, 435, 456, 750
TaqI TCGA 5 cut(s) 45, 282, 312, 519, 558
TasI AATT 1 cut(s) 510
TatI WGTACW 1 cut(s) 648
TauI GCSGC 7 cut(s) 66, 108, 147, 321, 324, 348, 795
TfiI GAWTC 2 cut(s) 582, 826
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 4 cut(s) 413, 530, 776, 841
TseFI GTSAC 3 cut(s) 160, 337, 673
TseI GCWGC 3 cut(s) 60, 712, 795
Tsp45I GTSAC 3 cut(s) 160, 337, 673
TspDTI ATGAA 1 cut(s) 860
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 4 cut(s) 413, 530, 776, 841
VpaK11BI GGWCC 2 cut(s) 16, 573
XapI RAATTY 1 cut(s) 510
ZrmI AGTACT 1 cut(s) 650
Zsp2I ATGCAT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.