FvH4_7g20090

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015864
Physical Location & Seq
Forward (+)
16402722 .. 16405041
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20090.t1

Sequence Viewer

Length: 342 bp
ATGGCTACACCATTTCTTGCTGGTCTTGCAGTAGCAGCCACTGCTCTTGCTGGTAGATATGGTATCCAGGCTTGGCAAGCATTCAAGGCACGACCACCTAAACCTCCTCAAATGCGCAAATTTTTTGAAGGGGGTTTTCAGCCGACTATGACTAGAAGGGAAGCAGCTCAGATTCTTGGTCTCAGGGAAAGTGCGCCCCCAGACAAGGTTAAGGAAGCACATCGAAGAGTGATGGTTGCAAATCATCCTGATGCAGGTGGCAGTCATTACCTTGCTTCTAAAATCAACGAGGCTAAAGATGTGATGCTTAGGAAGACAAAGGGCGGTGGATCAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.23

Weight (kDa)

10.57

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015864)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35795
fragaria_vesca FvH4_7g20090
malus_domestica MD01G1130500.v1.1 MD07G1178600.v1.1
prunus_persica Prupe.2G217700_v2.0.a1
pyrus_communis pycom01g13930 pycom07g17220
rosa_chinensis RchiOBHm_Chr1g0364051
rosa_multiflora Rmu_sc0009677.1_g000021
rosa_roxburghii Rroxscaffold_4G00292700
rosa_rugosa Rorug01G0313100
rosa_samantha Rh1AG320500 Rh1BG283700 Rh1CG300100
rosa_wichuraiana Rw1G028410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 245
Acc16I TGCGCA 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 245
AciI CCGC 1 cut(s) 324
AclWI GGATC 1 cut(s) 337
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 205, 254
AgsI TTSAA 2 cut(s) 85, 128
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 35, 164
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 2 cut(s) 117, 196
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 47, 176
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 245
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 2 cut(s) 36, 165
BlsI GCNGC 2 cut(s) 37, 166
Bme1390I CCNGG 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 241, 294
BpiI GAAGAC 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 185
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 254
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 205, 254
BseMII CTCAG 2 cut(s) 182, 196
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 47, 176
BslI CCNNNNNNNGG 2 cut(s) 205, 254
BsmAI GTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 1 cut(s) 324
BspCNI CTCAG 2 cut(s) 181, 195
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 185
BssMI GATC 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 168, 182, 308
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 244
BstHHI GCGC 2 cut(s) 117, 196
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 5 cut(s) 26, 35, 41, 77, 86
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 47, 176
BstV2I GAAGAC 1 cut(s) 320
BsuI GTATCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 2 cut(s) 117, 196
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviJI RGCY 6 cut(s) 5, 38, 71, 142, 167, 293
CviKI_1 RGCY 6 cut(s) 5, 38, 71, 142, 167, 293
DdeI CTNAG 3 cut(s) 168, 182, 308
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 66
FaiI YATR 2 cut(s) 60, 149
Fnu4HI GCNGC 2 cut(s) 36, 165
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 36, 165
FspBI CTAG 1 cut(s) 153
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 2 cut(s) 116, 195
GluI GCNGC 2 cut(s) 36, 165
HhaI GCGC 2 cut(s) 117, 196
Hin6I GCGC 2 cut(s) 115, 194
HinP1I GCGC 2 cut(s) 115, 194
HinfI GANTC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 122, 150
HpyCH4V TGCA 3 cut(s) 29, 239, 254
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 35, 41, 77, 86
HpyF3I CTNAG 3 cut(s) 168, 182, 308
HspAI GCGC 2 cut(s) 115, 194
Kzo9I GATC 1 cut(s) 329
LpnPI CCDG 8 cut(s) 6, 36, 53, 80, 169, 213, 240, 261
Lsp1109I GCAGC 2 cut(s) 47, 176
LweI GCATC 2 cut(s) 241, 294
MaeI CTAG 1 cut(s) 153
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 237, 325
MluCI AATT 1 cut(s) 119
MnlI CCTC 3 cut(s) 114, 117, 283
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 5 cut(s) 26, 35, 41, 77, 86
NdeII GATC 1 cut(s) 329
NsbI TGCGCA 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 245
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 37, 166
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 36, 165
Sau3AI GATC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 68
SetI ASST 6 cut(s) 100, 106, 169, 210, 259, 273
SfaNI GCATC 2 cut(s) 241, 294
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 324
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 223
TasI AATT 1 cut(s) 119
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 46
TseI GCWGC 2 cut(s) 35, 164
TspRI CASTG 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 119
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.