Rh1CG300100

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015864
Physical Location & Seq
Forward (+)
57485786 .. 57488009
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG300100.1

Sequence Viewer

Length: 333 bp
ATGGCTACACCATTTCTTGCTGGTCTTGCAGTAGCAGCCACTGCTCTTGCTGGTAGATATGGTATCCAGGCGTGGCAAGCATTCAAGGCACGACCACCAAAAATGCGTAAATTTTTTGAAGGTGGTTTTCAGCCGACTATGACTAGAAGGGAAGCAGCTCAGATTCTTGGTCTCAGGGAGAGTGCGCCCCCAGACAAGGTCAAGGAAGCACATCGAAGAGTGATGGTTGCAAATCATCCTGATGCAGGTGGTAGTCATTACCTTGCTTCTAAAATCAACGAGGCTAAAGATGTGATGCTTAGGAAAACAAAGGGTGGTGGATCAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.91

Weight (kDa)

10.57

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015864)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35795
fragaria_vesca FvH4_7g20090
malus_domestica MD01G1130500.v1.1 MD07G1178600.v1.1
prunus_persica Prupe.2G217700_v2.0.a1
pyrus_communis pycom01g13930 pycom07g17220
rosa_chinensis RchiOBHm_Chr1g0364051
rosa_multiflora Rmu_sc0009677.1_g000021
rosa_roxburghii Rroxscaffold_4G00292700
rosa_rugosa Rorug01G0313100
rosa_samantha Rh1AG320500 Rh1BG283700 Rh1CG300100
rosa_wichuraiana Rw1G028410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 196, 245
AgsI TTSAA 2 cut(s) 85, 119
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 35, 155
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 47, 167
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 236
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 2 cut(s) 36, 156
BlsI GCNGC 2 cut(s) 37, 157
Bme1390I CCNGG 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 232, 285
Bpu10I CCTNAGC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 245
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 196, 245
BseMII CTCAG 2 cut(s) 173, 187
BseXI GCAGC 2 cut(s) 47, 167
BslI CCNNNNNNNGG 2 cut(s) 196, 245
BsmAI GTCTC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 172, 186
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 176
BssMI GATC 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 159, 173, 299
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 320
BstMWI GCNNNNNNNGC 5 cut(s) 26, 35, 41, 77, 86
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 47, 167
BsuI GTATCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviJI RGCY 5 cut(s) 5, 38, 133, 158, 284
CviKI_1 RGCY 5 cut(s) 5, 38, 133, 158, 284
DdeI CTNAG 3 cut(s) 159, 173, 299
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 66
FaiI YATR 2 cut(s) 60, 140
Fnu4HI GCNGC 2 cut(s) 36, 156
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 36, 156
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 36, 156
HhaI GCGC 1 cut(s) 187
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 113, 141
HpyCH4V TGCA 3 cut(s) 29, 230, 245
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 35, 41, 77, 86
HpyF3I CTNAG 3 cut(s) 159, 173, 299
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 1 cut(s) 320
LpnPI CCDG 8 cut(s) 6, 36, 53, 80, 160, 204, 231, 252
Lsp1109I GCAGC 2 cut(s) 47, 167
LweI GCATC 2 cut(s) 232, 285
MaeI CTAG 1 cut(s) 144
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MboII GAAGA 1 cut(s) 228
MluCI AATT 1 cut(s) 110
MnlI CCTC 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 5 cut(s) 26, 35, 41, 77, 86
NdeII GATC 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 37, 157
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 240
SatI GCNGC 2 cut(s) 36, 156
Sau3AI GATC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 68
SetI ASST 5 cut(s) 124, 160, 201, 250, 264
SfaNI GCATC 2 cut(s) 232, 285
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 1 cut(s) 110
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 214
TasI AATT 1 cut(s) 110
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 46
TseI GCWGC 2 cut(s) 35, 155
TspRI CASTG 1 cut(s) 46
Tth111I GACNNNGTC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 110
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.