Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015864

Physical Location & Seq

Genomic Coordinates Forward (+)

25831899 .. 25834160

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1178600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCTGGGCAGAGCACACAGCTTCTTCCCCAACTCACAACAACCCAAAGCCACAACCAGCTTCGAGAAGCCTCTGAATGAAAGACAAACCCCAAATTCTCAGCTCAGTCACGACATATTCAACGATATGGCTACACCATTGTTGGCTGGTCTTGCAGTAGCTGCTACTGCCCTTGCTGGTAGATATGGTATCCAGGCTTGGCATGCGTTTAAGACACGACCACCAAAAGCTAGAATGCGGAAATTTTATGAAGGTGGCTTCCAGCCAACAATGACAAAGAGGGAAGCAGCTCTTATTCTTGGTATTAGGGAAAGTGCAGCTGCAGACAAGGTCAAGGAAGCACATAGAAAGGTGATGGTTGCGAACCATCCTGATGCAGGTGGCAGTCATTACCTTGCTTCCAAAATCAATGAAGCCAAAGATGTGATGCTCGGGAAGACAAAGGGCAGCGGATCAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.77

Weight (kDa)

10.1

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35795
fragaria_vesca	FvH4_7g20090
malus_domestica	MD01G1130500.v1.1 MD07G1178600.v1.1
prunus_persica	Prupe.2G217700_v2.0.a1
pyrus_communis	pycom01g13930 pycom07g17220
rosa_chinensis	RchiOBHm_Chr1g0364051
rosa_multiflora	Rmu_sc0009677.1_g000021
rosa_roxburghii	Rroxscaffold_4G00292700
rosa_rugosa	Rorug01G0313100
rosa_samantha	Rh1AG320500 Rh1BG283700 Rh1CG300100
rosa_wichuraiana	Rw1G028410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
AciI	CCGC	2 cut(s)	238, 450
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	2 cut(s)	94, 242
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	7 cut(s)	21, 60, 103, 161, 230, 290, 320
AluI	AGCT	7 cut(s)	21, 60, 103, 161, 230, 290, 320
Alw21I	GWGCWC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	460
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	5 cut(s)	161, 287, 317, 320, 447
ApoI	RAATTY	2 cut(s)	94, 242
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	5 cut(s)	148, 299, 307, 329, 459
BccI	CCATC	2 cut(s)	349, 375
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	5 cut(s)	162, 288, 318, 321, 448
BlsI	GCNGC	5 cut(s)	163, 289, 319, 322, 449
Bme1390I	CCNGG	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	364, 417
BpiI	GAAGAC	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	113, 118
BseXI	GCAGC	5 cut(s)	148, 299, 307, 329, 459
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	452
BspACI	CCGC	2 cut(s)	238, 450
BspCNI	CTCAG	2 cut(s)	112, 117
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	460
BssMI	GATC	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	99, 104
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 161, 167, 203
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	5 cut(s)	148, 299, 307, 329, 459
BstV2I	GAAGAC	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	161
CviAII	CATG	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	99, 104
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	206
FaiI	YATR	6 cut(s)	116, 128, 186, 204, 249, 345
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	5 cut(s)	162, 288, 318, 321, 448
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	5 cut(s)	162, 288, 318, 321, 448
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	5 cut(s)	162, 288, 318, 321, 448
GsaI	CCCAGC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	4 cut(s)	64, 110, 371, 433
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	155, 317, 323, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 161, 167, 203
HpyF3I	CTNAG	2 cut(s)	99, 104
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	452
LpnPI	CCDG	8 cut(s)	70, 132, 162, 179, 206, 275, 363, 384
Lsp1109I	GCAGC	5 cut(s)	148, 299, 307, 329, 459
LweI	GCATC	2 cut(s)	364, 417
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	2 cut(s)	16, 448
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	94, 242
MnlI	CCTC	2 cut(s)	81, 273
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	2 cut(s)	320, 450
MspR9I	CCNGG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	152, 161, 167, 203
NdeII	GATC	1 cut(s)	452
NlaIII	CATG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	368
PctI	GAATGC	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	5 cut(s)	163, 289, 319, 322, 449
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	161
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	162, 288, 318, 321, 448
Sau3AI	GATC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	2 cut(s)	364, 417
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	94, 242
SsiI	CCGC	2 cut(s)	238, 450
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	192
TaqI	TCGA	1 cut(s)	63
TasI	AATT	2 cut(s)	94, 242
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	5 cut(s)	161, 287, 317, 320, 447
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	93, 264, 426
Tth111I	GACNNNGTC	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	2 cut(s)	94, 242
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.