Rroxscaffold_4G00292700

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
12923836 .. 12926384
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292700.1

Sequence Viewer

Length: 231 bp
ATGCGTAAATTTTTTGAAGGTGGTTTTCAGCCGACTATGACTAGAAGGGAAGCAGCTCAGATTCTTGGTCTCAGGGAGAGTGCACCCCCAGACAAGGTCAAGGAAGCACATCGAAGAGTGATGGTTGCAAATCATCCTGATGCAGGTGGTAGTCATTACCTTGCTTCTAAAATCAACGAGGCCAAAGATGTGATGCTTAGGAAGACAAAGGGCGGTGGATCAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.38

Weight (kDa)

10.2

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015864)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35795
fragaria_vesca FvH4_7g20090
malus_domestica MD01G1130500.v1.1 MD07G1178600.v1.1
prunus_persica Prupe.2G217700_v2.0.a1
pyrus_communis pycom01g13930 pycom07g17220
rosa_chinensis RchiOBHm_Chr1g0364051
rosa_multiflora Rmu_sc0009677.1_g000021
rosa_roxburghii Rroxscaffold_4G00292700
rosa_rugosa Rorug01G0313100
rosa_samantha Rh1AG320500 Rh1BG283700 Rh1CG300100
rosa_wichuraiana Rw1G028410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 134
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 94, 143
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 1 cut(s) 226
AoxI GGCC 1 cut(s) 180
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmsI GCATC 2 cut(s) 130, 183
BpiI GAAGAC 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 143
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 94, 143
BseMII CTCAG 2 cut(s) 71, 85
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 94, 143
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 70, 84
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 74
BssMI GATC 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 57, 71, 197
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 209
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 134
CviJI RGCY 3 cut(s) 31, 56, 182
CviKI_1 RGCY 3 cut(s) 31, 56, 182
DdeI CTNAG 3 cut(s) 57, 71, 197
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 141
FaiI YATR 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 182
HinfI GANTC 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 11, 39
HpyCH4V TGCA 3 cut(s) 83, 128, 143
HpyF3I CTNAG 3 cut(s) 57, 71, 197
Kzo9I GATC 1 cut(s) 218
LpnPI CCDG 4 cut(s) 58, 102, 129, 150
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 130, 183
MaeI CTAG 1 cut(s) 42
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 2 cut(s) 126, 214
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 1 cut(s) 8
MnlI CCTC 1 cut(s) 172
MslI CAYNNNNRTG 1 cut(s) 138
NdeII GATC 1 cut(s) 218
PaqCI CACCTGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 22, 58, 99, 148, 162
SfaNI GCATC 2 cut(s) 130, 183
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 42
TaqI TCGA 1 cut(s) 112
TasI AATT 1 cut(s) 8
TfiI GAWTC 1 cut(s) 61
TseI GCWGC 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 95
VneI GTGCAC 1 cut(s) 81
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 8
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.