FvH4_7g22600

Dual-specificity RNA methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
17808948 .. 17812386
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22600.t1

Sequence Viewer

Length: 1245 bp
ATGATGACAGCCACATCAACCGCGCTAATCCAGCGCGTGTGCTCCGTCCCCCTCGCGCGTGCCGTCCGCACTCGCGCCTTGGCCACCGCCGTGAACCTCTCCACCACTCCCACTCCACGCGCCTCCCCGGCCGACTCCTCGCGCGTCCTGCTCGGCTTGTCCGAAGCGGAGCTCCAGCAGCTCGCTCTCGACTTCAGTCAGCAAGGCTACAGAGGCAAGCAGCTTCATCAGCTTATTTACAAAAGAAAGATTAAAGATATTCAGGATTTTAGTCAAGTGCCTCTGGCATTCAGGAATGAACTTGAGGAAGCTGGGTGGAAGGTTGGGAGGTCACCTATCTACAATACCGTCACCGCTGCTGATGGCACTGTTAAGTTATTGATAAAGTTGGAGGATAACCGGTTGATTGAAACTGTTGGCATACCGGTTCAAGATGAGAAAGGTTTGACGCGCCTTACAGCATGTGTCTCATCACAGGTCGGATGCCCGCTGCGTTGCTCCTTTTGTGCCACTGGGAAAGGAGGATTTTCAAGGAACCTTAAGAGGCATGAAATCGTTGAGCAGGTTTTGGCCATTGAGGAGATATTCAAGCATAGGGTGACTAATGTAGTGTTCATGGGAATGGGTGAACCAATGATGAACCTCAAGTCTGTACTTGAAGCACACCAGTGCTTGAATAAGGATGTGCAAATTGGGCAAAGAATGATGACAATTTCTACGGTGGGGGTTCCAAATACAATTAAAAGGCTGGCATCTCACAAGCTTCAGTCGACATTGGCTGTCAGCCTGCATGCTCCAAACCAGAAACTTAGAGAAACAATTGTACCCAGTGCAAAAGCATATCCTCTAAGTGCACTTATGAAGGATTGCAGCGACTATTTCAATGAAACAAGTAGACGAGTTTCCTTTGAGTATGCCCTGTTAGCTGGAGTCAATGATGGAGTAGAGCATGCACGTGAACTTGCAGAGCTACTTCATCAGTGGGGAAAGGGTTATCATGTGAACTTGATACCTTTTAACCCAATAGAAGGTTCTGAGTATAAGCGTCCATCCAAGAGAGCTGTACAGGCATTTGCTGCTGCCCTGGAGTCCGGAAAAATAACTGTTAGCACACGTCAAACAAGGGGCCTTGATGCAGATGCAGCTTGTGGCCAGCTAAGAAACAAGTTCCAGAAGAGTCCTTTAGTCTCCGAGTCTGACAACTTACAACCTGAACCTGAAGCAGATGTTGCAGTTGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

415

Amino Acids

45.53

Weight (kDa)

9.13

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 157 - 319 1.7e-15 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010937)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 553
AccI GTMKAC 2 cut(s) 770, 895
AccII CGCG 9 cut(s) 23, 36, 56, 58, 75, 120, 142, 144, 451
AccIII TCCGGA 1 cut(s) 1091
AciI CCGC 6 cut(s) 21, 67, 87, 167, 354, 488
AcoI YGGCCR 4 cut(s) 81, 129, 570, 1150
AcuI CTGAAG 3 cut(s) 178, 749, 1239
AcvI CACGTG 1 cut(s) 956
AfaI GTAC 3 cut(s) 654, 825, 1065
AfiI CCNNNNNNNGG 1 cut(s) 1028
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 1112
AgeI ACCGGT 2 cut(s) 399, 424
AgsI TTSAA 7 cut(s) 410, 431, 531, 589, 659, 676, 883
AjiI CACGTC 1 cut(s) 1115
AjnI CCWGG 1 cut(s) 1083
AjuI GAANNNNNNNTTGG 2 cut(s) 1015, 1047
AleI CACNNNNGTG 2 cut(s) 89, 667
Alw21I GWGCWC 3 cut(s) 44, 174, 856
Alw26I GTCTC 2 cut(s) 472, 1192
Alw44I GTGCAC 1 cut(s) 852
Aor13HI TCCGGA 1 cut(s) 1091
AoxI GGCC 5 cut(s) 81, 129, 570, 1126, 1150
ApaLI GTGCAC 1 cut(s) 852
ApeKI GCWGC 8 cut(s) 178, 220, 356, 490, 870, 1076, 1079, 1142
AsiGI ACCGGT 2 cut(s) 399, 424
AspLEI GCGC 7 cut(s) 25, 36, 58, 77, 122, 144, 453
AspS9I GGNCC 1 cut(s) 1126
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 4 cut(s) 324, 343, 610, 638
BaeGI GKGCMC 1 cut(s) 856
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BalI TGGCCA 3 cut(s) 83, 572, 1152
BanII GRGCYC 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 956
Bbv12I GWGCWC 3 cut(s) 44, 174, 856
BbvI GCAGC 8 cut(s) 190, 232, 343, 477, 882, 1063, 1066, 1154
BccI CCATC 3 cut(s) 356, 932, 1057
BceAI ACGGC 2 cut(s) 47, 74
BciT130I CCWGG 1 cut(s) 1085
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 472, 1192
BfmI CTRYAG 1 cut(s) 208
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 8 cut(s) 179, 221, 357, 491, 871, 1077, 1080, 1143
BlsI GCNGC 8 cut(s) 180, 222, 358, 492, 872, 1078, 1081, 1144
Bme1390I CCNGG 2 cut(s) 128, 1085
BmgBI CACGTC 1 cut(s) 1115
BmgT120I GGNCC 1 cut(s) 1126
BmiI GGNNCC 3 cut(s) 536, 729, 1127
BmrFI CCNGG 2 cut(s) 128, 1085
BmrI ACTGGG 2 cut(s) 522, 822
BmsI GCATC 4 cut(s) 473, 761, 1123, 1129
BmuI ACTGGG 2 cut(s) 522, 822
BoxI GACNNNNGTC 1 cut(s) 195
BpmI CTGGAG 3 cut(s) 158, 948, 1106
BpuEI CTTGAG 2 cut(s) 323, 629
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 956
BsaJI CCNNGG 3 cut(s) 78, 126, 1083
BsaWI WCCGGW 3 cut(s) 399, 424, 1091
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 1028
Bse118I RCCGGY 2 cut(s) 399, 424
Bse1I ACTGG 3 cut(s) 517, 667, 828
BseAI TCCGGA 1 cut(s) 1091
BseBI CCWGG 1 cut(s) 1085
BseDI CCNNGG 3 cut(s) 78, 126, 1083
BseGI GGATG 3 cut(s) 488, 688, 1049
BseLI CCNNNNNNNGG 1 cut(s) 1028
BseMII CTCAG 1 cut(s) 1026
BseNI ACTGG 3 cut(s) 517, 667, 828
BseRI GAGGAG 2 cut(s) 127, 593
BseSI GKGCMC 1 cut(s) 856
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 8 cut(s) 190, 232, 343, 477, 882, 1063, 1066, 1154
BseYI CCCAGC 1 cut(s) 311
Bsh1236I CGCG 9 cut(s) 23, 36, 56, 58, 75, 120, 142, 144, 451
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 5 cut(s) 83, 131, 572, 1128, 1152
BshTI ACCGGT 2 cut(s) 399, 424
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 3 cut(s) 44, 174, 856
BsiSI CCGG 4 cut(s) 128, 400, 425, 1092
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 1028
BsmAI GTCTC 2 cut(s) 472, 1192
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 5 cut(s) 83, 131, 572, 1128, 1152
Bsp1286I GDGCHC 3 cut(s) 44, 174, 856
Bsp13I TCCGGA 1 cut(s) 1091
Bsp1407I TGTACA 1 cut(s) 1063
BspACI CCGC 6 cut(s) 21, 67, 87, 167, 354, 488
BspANI GGCC 5 cut(s) 83, 131, 572, 1128, 1152
BspCNI CTCAG 1 cut(s) 1027
BspEI TCCGGA 1 cut(s) 1091
BspFNI CGCG 9 cut(s) 23, 36, 56, 58, 75, 120, 142, 144, 451
BspLI GGNNCC 3 cut(s) 536, 729, 1127
BspMI ACCTGC 1 cut(s) 553
BspTI CTTAAG 1 cut(s) 539
BsrFI RCCGGY 2 cut(s) 399, 424
BsrGI TGTACA 1 cut(s) 1063
BsrI ACTGG 3 cut(s) 517, 667, 828
BssAI RCCGGY 2 cut(s) 399, 424
BssECI CCNNGG 3 cut(s) 78, 126, 1083
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 5 cut(s) 349, 370, 415, 721, 1105
Bst6I CTCTTC 1 cut(s) 1169
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 2 cut(s) 1076, 1229
BstAUI TGTACA 1 cut(s) 1063
BstBAI YACGTR 1 cut(s) 956
BstC8I GCNNGC 9 cut(s) 60, 183, 218, 488, 750, 788, 792, 951, 1154
BstDEI CTNAG 4 cut(s) 809, 848, 1035, 1157
BstEII GGTNACC 1 cut(s) 330
BstF5I GGATG 3 cut(s) 488, 688, 1049
BstFNI CGCG 9 cut(s) 23, 36, 56, 58, 75, 120, 142, 144, 451
BstHHI GCGC 7 cut(s) 25, 36, 58, 77, 122, 144, 453
BstMAI GTCTC 2 cut(s) 472, 1192
BstMCI CGRYCG 1 cut(s) 132
BstNI CCWGG 1 cut(s) 1085
BstNSI RCATGY 4 cut(s) 465, 794, 953, 1242
BstPAI GACNNNNGTC 1 cut(s) 195
BstPI GGTNACC 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 126, 1083
BstSFI CTRYAG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 856
BstUI CGCG 9 cut(s) 23, 36, 56, 58, 75, 120, 142, 144, 451
BstV1I GCAGC 8 cut(s) 190, 232, 343, 477, 882, 1063, 1066, 1154
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 5 cut(s) 83, 131, 572, 1128, 1152
BtrI CACGTC 1 cut(s) 1115
BtsCI GGATG 3 cut(s) 488, 688, 1049
BtsIMutI CAGTG 5 cut(s) 366, 510, 674, 835, 986
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 9 cut(s) 60, 183, 218, 488, 750, 788, 792, 951, 1154
CfoI GCGC 7 cut(s) 25, 36, 58, 77, 122, 144, 453
Cfr10I RCCGGY 2 cut(s) 399, 424
Cfr13I GGNCC 1 cut(s) 1126
CseI GACGC 3 cut(s) 133, 457, 1034
Csp6I GTAC 3 cut(s) 653, 824, 1064
CspAI ACCGGT 2 cut(s) 399, 424
CviAII CATG 7 cut(s) 462, 548, 616, 791, 950, 998, 1239
CviQI GTAC 3 cut(s) 653, 824, 1064
DdeI CTNAG 4 cut(s) 809, 848, 1035, 1157
EaeI YGGCCR 4 cut(s) 81, 129, 570, 1150
EagI CGGCCG 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 1169
EarI CTCTTC 1 cut(s) 1169
Ecl136II GAGCTC 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 3 cut(s) 178, 749, 1239
Eco72I CACGTG 1 cut(s) 956
Eco91I GGTNACC 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 1126
EcoO65I GGTNACC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 1083
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 7 cut(s) 465, 551, 619, 794, 953, 1001, 1242
FaqI GGGAC 1 cut(s) 32
FatI CATG 7 cut(s) 461, 547, 615, 790, 949, 997, 1238
FauI CCCGC 1 cut(s) 495
FblI GTMKAC 2 cut(s) 770, 895
Fnu4HI GCNGC 8 cut(s) 179, 221, 357, 491, 871, 1077, 1080, 1143
FokI GGATG 3 cut(s) 495, 695, 1036
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 8 cut(s) 179, 221, 357, 491, 871, 1077, 1080, 1143
GlaI GCGC 7 cut(s) 24, 35, 57, 76, 121, 143, 452
GluI GCNGC 8 cut(s) 179, 221, 357, 491, 871, 1077, 1080, 1143
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 3 cut(s) 158, 948, 1106
HaeIII GGCC 5 cut(s) 83, 131, 572, 1128, 1152
HapII CCGG 4 cut(s) 128, 400, 425, 1092
HgaI GACGC 3 cut(s) 133, 457, 1034
HhaI GCGC 7 cut(s) 25, 36, 58, 77, 122, 144, 453
Hin1II CATG 7 cut(s) 465, 551, 619, 794, 953, 1001, 1242
Hin6I GCGC 7 cut(s) 23, 34, 56, 75, 120, 142, 451
HinP1I GCGC 7 cut(s) 23, 34, 56, 75, 120, 142, 451
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 5 cut(s) 134, 930, 1088, 1177, 1193
HpaII CCGG 4 cut(s) 128, 400, 425, 1092
HphI GGTGA 4 cut(s) 324, 343, 610, 638
Hpy166II GTNNAC 7 cut(s) 94, 629, 771, 854, 896, 959, 1003
Hpy188I TCNGA 5 cut(s) 163, 482, 1036, 1192, 1198
Hpy188III TCNNGA 6 cut(s) 188, 263, 292, 431, 1092, 1171
Hpy8I GTNNAC 7 cut(s) 94, 629, 771, 854, 896, 959, 1003
HpyAV CCTTC 3 cut(s) 313, 856, 1022
HpyCH4III ACNGT 5 cut(s) 349, 370, 415, 721, 1105
HpyCH4IV ACGT 2 cut(s) 955, 1114
HpyF3I CTNAG 4 cut(s) 809, 848, 1035, 1157
HpySE526I ACGT 2 cut(s) 955, 1114
Hsp92II CATG 7 cut(s) 465, 551, 619, 794, 953, 1001, 1242
HspAI GCGC 7 cut(s) 23, 34, 56, 75, 120, 142, 451
Kpn2I TCCGGA 1 cut(s) 1091
LmnI GCTCC 5 cut(s) 47, 169, 177, 503, 799
Lsp1109I GCAGC 8 cut(s) 190, 232, 343, 477, 882, 1063, 1066, 1154
LweI GCATC 4 cut(s) 473, 761, 1123, 1129
MaeII ACGT 2 cut(s) 955, 1114
MaeIII GTNAC 3 cut(s) 330, 349, 598
MboII GAAGA 1 cut(s) 1186
MfeI CAATTG 1 cut(s) 819
MhlI GDGCHC 3 cut(s) 44, 174, 856
MlsI TGGCCA 3 cut(s) 83, 572, 1152
MluCI AATT 4 cut(s) 690, 711, 738, 819
MluNI TGGCCA 3 cut(s) 83, 572, 1152
MlyI GAGTC 5 cut(s) 128, 939, 1097, 1186, 1202
MmeI TCCRAC 2 cut(s) 369, 460
Mox20I TGGCCA 3 cut(s) 83, 572, 1152
MroI TCCGGA 1 cut(s) 1091
MscI TGGCCA 3 cut(s) 83, 572, 1152
MseI TTAA 5 cut(s) 252, 372, 540, 741, 1017
MslI CAYNNNNRTG 4 cut(s) 89, 620, 667, 954
Msp20I TGGCCA 3 cut(s) 83, 572, 1152
MspA1I CMGCKG 2 cut(s) 356, 490
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 4 cut(s) 128, 400, 425, 1092
MspR9I CCNGG 2 cut(s) 128, 1085
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 1 cut(s) 1085
MvnI CGCG 9 cut(s) 23, 36, 56, 58, 75, 120, 142, 144, 451
NciI CCSGG 1 cut(s) 128
NlaIII CATG 7 cut(s) 465, 551, 619, 794, 953, 1001, 1242
NlaIV GGNNCC 3 cut(s) 536, 729, 1127
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 3 cut(s) 330, 349, 598
NspI RCATGY 4 cut(s) 465, 794, 953, 1242
OliI CACNNNNGTG 2 cut(s) 89, 667
PaeI GCATGC 2 cut(s) 794, 953
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 159
PctI GAATGC 1 cut(s) 287
PinAI ACCGGT 2 cut(s) 399, 424
PkrI GCNGC 8 cut(s) 180, 222, 358, 492, 872, 1078, 1081, 1144
PleI GAGTC 5 cut(s) 128, 938, 1096, 1185, 1201
PmaCI CACGTG 1 cut(s) 956
PmlI CACGTG 1 cut(s) 956
PpsI GAGTC 5 cut(s) 128, 938, 1096, 1185, 1201
Ppu21I YACGTR 1 cut(s) 956
PshAI GACNNNNGTC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 1083
PspCI CACGTG 1 cut(s) 956
PspEI GGTNACC 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 1083
PspN4I GGNNCC 3 cut(s) 536, 729, 1127
PspPI GGNCC 1 cut(s) 1126
RsaI GTAC 3 cut(s) 654, 825, 1065
RsaNI GTAC 3 cut(s) 653, 824, 1064
RseI CAYNNNNRTG 4 cut(s) 89, 620, 667, 954
SacI GAGCTC 1 cut(s) 174
SalI GTCGAC 1 cut(s) 769
SaqAI TTAA 5 cut(s) 252, 372, 540, 741, 1017
SatI GCNGC 8 cut(s) 179, 221, 357, 491, 871, 1077, 1080, 1143
Sau96I GGNCC 1 cut(s) 1126
SchI GAGTC 5 cut(s) 128, 939, 1097, 1186, 1202
ScrFI CCNGG 2 cut(s) 128, 1085
SduI GDGCHC 3 cut(s) 44, 174, 856
SfaNI GCATC 4 cut(s) 473, 761, 1123, 1129
SfcI CTRYAG 1 cut(s) 208
SmiMI CAYNNNNRTG 4 cut(s) 89, 620, 667, 954
SmlI CTYRAG 3 cut(s) 302, 539, 644
SmoI CTYRAG 3 cut(s) 302, 539, 644
SphI GCATGC 2 cut(s) 794, 953
Sse9I AATT 4 cut(s) 690, 711, 738, 819
SsiI CCGC 6 cut(s) 21, 67, 87, 167, 354, 488
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 126, 1083
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 5 cut(s) 349, 370, 415, 721, 1105
TaiI ACGT 2 cut(s) 958, 1117
TaqI TCGA 2 cut(s) 189, 770
TasI AATT 4 cut(s) 690, 711, 738, 819
TatI WGTACW 2 cut(s) 652, 1063
Tru1I TTAA 5 cut(s) 252, 372, 540, 741, 1017
Tru9I TTAA 5 cut(s) 252, 372, 540, 741, 1017
TscAI CASTG 5 cut(s) 373, 517, 674, 835, 986
TseFI GTSAC 3 cut(s) 330, 349, 598
TseI GCWGC 8 cut(s) 178, 220, 356, 490, 870, 1076, 1079, 1142
Tsp45I GTSAC 3 cut(s) 330, 349, 598
TspDTI ATGAA 8 cut(s) 215, 312, 564, 604, 653, 875, 900, 965
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 5 cut(s) 373, 517, 674, 835, 986
Vha464I CTTAAG 1 cut(s) 539
VneI GTGCAC 1 cut(s) 852
XceI RCATGY 4 cut(s) 465, 794, 953, 1242
XmiI GTMKAC 2 cut(s) 770, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.