Rorug01G0336200
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000357
Physical Location & Seq
Reverse (-)
45448827 .. 45454261
5435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0336200.1

Sequence Viewer

Length: 1098 bp
ATGTTATACAAGAACATGGCAAATTGGAACCTTGATCAGGATGTTGTTCGTTGGGGTTTGCATCATCTCTTGGATTGTACTCTTTCGAATGATTTTTCTCGAAGTACTGTTACTGAATATCAATGGGACTCTAGTCAAGTAGAGTGTGTAAACGAAGGTTATGTTGAGCCTTGTAGTGTGGAGAACGATGAGGTTTTAGCTCGTGCGTTGCAAGAAGAGCTATCTAGACTTGCAAAGGAAGAGGCCGCGGGAGTTTCTAGTTATGGAGATGCGCCTTTGCAAGCGTCGATTCTTGCACAGGATTGGCTCGGTCCTTCAAGCAGACACAATGGTTCTGGGCTTGAAAATGTTCAGGATGCAGTGAATGATTTTGGCAGGATGATGGACAACGATGATTGTAGAAATCAGGAAAATGAGGGGGATGGTCCTAGGAGAAATGGAAATGGGGAAGCATATGAAAACAGTGATGGAGAGCACTCGGTGGATGGGGAAGACTTGTTGCATCCGTGGGATATAACAGATGAGTATGCTCTTGATGGTGAAGTAGGGAGAAGATTGAATCAGATGGTTCCTGTTCCTCATATTCCTAAAACGAATGAGAAAATACCCACAGTTGATGAAGAGATATCAGATCATCAGAGGCTTATTGAAAGACTGAAGTTGTATGAGTTGGTGGAGTGTAAGATCCAGGGAGATGGGAACTGTCAGTTTCGCGCTTTATCAGATCAACTATATCGTTCTTCTGAATACCATGGCCTTGTAAGAGATCAAATTATTCAACAGCTCAAGAATCACCCCGAAATATATGATGGTTACGTTCCGATGGGTTATGTTGATTACATAAAGAAAATGAGCAAGAGTGGTGAATGGGGCGACCATGTCACGTTGCAGGCTGCTGCAGATTCGTATGGTGTCAAGATATTTGTTATCACTTCTTTCAAGGATACATGCTATATTGAGATCCTTCCACATGTTTTAAAATCTAGTAGAGTTATCTGCTTGAGCTTTTGGGCTGAGGTGCACTACAATTCTATCTATCCTGAAGGAGAACTTCCTCCGCCCAGCTTAAAGAAAAAGAAGCATTGGTGGAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

365

Amino Acids

41.68

Weight (kDa)

4.75

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 230 - 318 6.5e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 248, 714
AciI CCGC 3 cut(s) 246, 248, 1058
AclWI GGATC 2 cut(s) 679, 955
AcuI CTGAAG 2 cut(s) 677, 1062
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 2 cut(s) 79, 106
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 970
AgsI TTSAA 6 cut(s) 318, 344, 559, 650, 779, 940
AjnI CCWGG 1 cut(s) 687
AluBI AGCT 5 cut(s) 200, 220, 784, 1005, 1065
AluI AGCT 5 cut(s) 200, 220, 784, 1005, 1065
Alw21I GWGCWC 2 cut(s) 477, 1023
Alw44I GTGCAC 1 cut(s) 1019
AlwI GGATC 2 cut(s) 679, 955
AoxI GGCC 2 cut(s) 243, 754
ApaLI GTGCAC 1 cut(s) 1019
ApeKI GCWGC 2 cut(s) 893, 896
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 2 cut(s) 274, 716
AspS9I GGNCC 2 cut(s) 311, 425
AsuHPI GGTGA 3 cut(s) 551, 785, 875
AsuII TTCGAA 1 cut(s) 86
AvaII GGWCC 2 cut(s) 311, 425
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 1023
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 477, 1023
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 2 cut(s) 880, 883
BccI CCATC 9 cut(s) 376, 416, 461, 479, 530, 559, 689, 803, 817
BciT130I CCWGG 1 cut(s) 689
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 1 cut(s) 34
BfaI CTAG 5 cut(s) 132, 225, 258, 429, 984
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 937
BisI GCNGC 3 cut(s) 246, 894, 897
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 247, 895, 898
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 689
Bme18I GGWCC 2 cut(s) 311, 425
BmgT120I GGNCC 2 cut(s) 311, 425
BmiI GGNNCC 2 cut(s) 29, 570
BmrFI CCNGG 1 cut(s) 689
BmsI GCATC 4 cut(s) 70, 259, 346, 511
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 770, 1021
BsaJI CCNNGG 5 cut(s) 246, 428, 506, 688, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 5 cut(s) 246, 428, 506, 688, 751
BseGI GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 1005
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 2 cut(s) 880, 883
BseYI CCCAGC 1 cut(s) 1061
Bsh1236I CGCG 2 cut(s) 248, 714
BshFI GGCC 2 cut(s) 245, 756
BsiHKAI GWGCWC 2 cut(s) 477, 1023
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 245, 756
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 477, 1023
Bsp143I GATC 6 cut(s) 34, 631, 684, 724, 766, 960
Bsp19I CCATGG 1 cut(s) 751
BspACI CCGC 3 cut(s) 246, 248, 1058
BspANI GGCC 2 cut(s) 245, 756
BspCNI CTCAG 1 cut(s) 1006
BspFNI CGCG 2 cut(s) 248, 714
BspLI GGNNCC 2 cut(s) 29, 570
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 2 cut(s) 679, 955
BspQI GCTCTTC 1 cut(s) 210
BspT104I TTCGAA 1 cut(s) 86
BssECI CCNNGG 5 cut(s) 246, 428, 506, 688, 751
BssMI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 428, 751
Bst2BI CACGAG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 4 cut(s) 109, 464, 613, 704
Bst6I CTCTTC 3 cut(s) 210, 234, 615
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 282, 891
BstDEI CTNAG 1 cut(s) 1014
BstDSI CCRYGG 3 cut(s) 246, 506, 751
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BstFNI CGCG 2 cut(s) 248, 714
BstHHI GCGC 2 cut(s) 274, 716
BstKTI GATC 6 cut(s) 37, 634, 687, 727, 769, 963
BstMBI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 2 cut(s) 951, 974
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 687
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 1023
BstUI CGCG 2 cut(s) 248, 714
BstV1I GCAGC 2 cut(s) 880, 883
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 684, 960
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 2 cut(s) 684, 960
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 2 cut(s) 245, 756
BtgI CCRYGG 3 cut(s) 246, 506, 751
BtsCI GGATG 6 cut(s) 46, 361, 384, 427, 490, 502
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 469
Cac8I GCNNGC 2 cut(s) 282, 891
CfoI GCGC 2 cut(s) 274, 716
Cfr13I GGNCC 2 cut(s) 311, 425
Cfr42I CCGCGG 1 cut(s) 249
CseI GACGC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 78, 105
CviAII CATG 5 cut(s) 16, 752, 878, 948, 971
CviQI GTAC 2 cut(s) 78, 105
DdeI CTNAG 1 cut(s) 1014
DpnI GATC 6 cut(s) 36, 633, 686, 726, 768, 962
DpnII GATC 6 cut(s) 34, 631, 684, 724, 766, 960
DraI TTTAAA 1 cut(s) 978
DraIII CACNNNGTG 1 cut(s) 481
Eam1104I CTCTTC 3 cut(s) 210, 234, 615
EarI CTCTTC 3 cut(s) 210, 234, 615
EciI GGCGGA 1 cut(s) 1047
Eco130I CCWWGG 2 cut(s) 428, 751
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 311, 425
Eco57I CTGAAG 2 cut(s) 677, 1062
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 687
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 2 cut(s) 428, 751
ErhI CCWWGG 2 cut(s) 428, 751
FaeI CATG 5 cut(s) 19, 755, 881, 951, 974
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 15, 751, 877, 947, 970
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 246, 894, 897
FokI GGATG 6 cut(s) 53, 368, 391, 434, 489, 497
Fsp4HI GCNGC 3 cut(s) 246, 894, 897
FspBI CTAG 5 cut(s) 132, 225, 258, 429, 984
GlaI GCGC 2 cut(s) 273, 715
GluI GCNGC 3 cut(s) 246, 894, 897
GsaI CCCAGC 1 cut(s) 1065
HaeIII GGCC 2 cut(s) 245, 756
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 274, 716
Hin1II CATG 5 cut(s) 19, 755, 881, 951, 974
Hin6I GCGC 2 cut(s) 272, 714
HinP1I GCGC 2 cut(s) 272, 714
HinfI GANTC 5 cut(s) 128, 289, 559, 790, 902
HphI GGTGA 3 cut(s) 551, 785, 875
Hpy166II GTNNAC 2 cut(s) 151, 1021
Hpy188I TCNGA 6 cut(s) 564, 631, 639, 724, 745, 822
Hpy188III TCNNGA 9 cut(s) 38, 99, 225, 353, 407, 533, 787, 916, 1040
Hpy8I GTNNAC 2 cut(s) 151, 1021
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 4 cut(s) 149, 324, 974, 1037
HpyCH4III ACNGT 4 cut(s) 109, 464, 613, 704
HpyCH4IV ACGT 2 cut(s) 816, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 1014
HpySE526I ACGT 2 cut(s) 816, 884
Hsp92II CATG 5 cut(s) 19, 755, 881, 951, 974
HspAI GCGC 2 cut(s) 272, 714
Ksp22I TGATCA 1 cut(s) 34
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 6 cut(s) 34, 631, 684, 724, 766, 960
LguI GCTCTTC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 880, 883
LweI GCATC 4 cut(s) 70, 259, 346, 511
MaeI CTAG 5 cut(s) 132, 225, 258, 429, 984
MaeII ACGT 2 cut(s) 816, 884
MaeIII GTNAC 3 cut(s) 109, 812, 880
MalI GATC 6 cut(s) 36, 633, 686, 726, 768, 962
MboI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
MboII GAAGA 6 cut(s) 227, 251, 503, 564, 632, 732
MflI RGATCY 2 cut(s) 684, 960
MhlI GDGCHC 2 cut(s) 477, 1023
MluCI AATT 3 cut(s) 22, 771, 1027
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 7 cut(s) 184, 235, 409, 588, 633, 1009, 1065
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 2 cut(s) 977, 1067
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 689
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 2 cut(s) 248, 714
MwoI GCNNNNNNNGC 1 cut(s) 217
NcoI CCATGG 1 cut(s) 751
NdeI CATATG 1 cut(s) 454
NdeII GATC 6 cut(s) 34, 631, 684, 724, 766, 960
NlaIII CATG 5 cut(s) 19, 755, 881, 951, 974
NlaIV GGNNCC 2 cut(s) 29, 570
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 2 cut(s) 951, 974
NspV TTCGAA 1 cut(s) 86
PciI ACATGT 1 cut(s) 970
PciSI GCTCTTC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 289, 559, 790, 902
PflFI GACNNNGTC 1 cut(s) 878
PkrI GCNGC 3 cut(s) 247, 895, 898
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 970
PshAI GACNNNNGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 687
PspFI CCCAGC 1 cut(s) 1061
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 29, 570
PspPI GGNCC 2 cut(s) 311, 425
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 684, 960
PsyI GACNNNGTC 1 cut(s) 878
RsaI GTAC 2 cut(s) 79, 106
RsaNI GTAC 2 cut(s) 78, 105
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 977, 1067
SatI GCNGC 3 cut(s) 246, 894, 897
Sau3AI GATC 6 cut(s) 34, 631, 684, 724, 766, 960
Sau96I GGNCC 2 cut(s) 311, 425
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 2 cut(s) 477, 1023
SfaNI GCATC 4 cut(s) 70, 259, 346, 511
SfcI CTRYAG 1 cut(s) 897
Sfr303I CCGCGG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 311, 425
SmlI CTYRAG 2 cut(s) 785, 1000
SmoI CTYRAG 2 cut(s) 785, 1000
Sse9I AATT 3 cut(s) 22, 771, 1027
SsiI CCGC 3 cut(s) 246, 248, 1058
SspMI CTAG 5 cut(s) 132, 225, 258, 429, 984
StyD4I CCNGG 1 cut(s) 687
StyI CCWWGG 2 cut(s) 428, 751
TaaI ACNGT 4 cut(s) 109, 464, 613, 704
TaiI ACGT 2 cut(s) 819, 887
TaqI TCGA 3 cut(s) 86, 100, 287
TaqII GACCGA 1 cut(s) 299
TasI AATT 3 cut(s) 22, 771, 1027
TatI WGTACW 2 cut(s) 77, 104
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 4 cut(s) 289, 559, 790, 902
Tru1I TTAA 2 cut(s) 977, 1067
Tru9I TTAA 2 cut(s) 977, 1067
TscAI CASTG 2 cut(s) 366, 469
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 2 cut(s) 893, 896
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 2 cut(s) 471, 633
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 366, 469
Tth111I GACNNNGTC 1 cut(s) 878
VneI GTGCAC 1 cut(s) 1019
VpaK11BI GGWCC 2 cut(s) 311, 425
XagI CCTNNNNNAGG 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 224
XceI RCATGY 2 cut(s) 951, 974
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 5 cut(s) 132, 225, 258, 429, 984
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.