pycom01g11490
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000357
Physical Location & Seq
Forward (+)
12495968 .. 12497722
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11490.2

Sequence Viewer

Length: 807 bp
ATGGCCCTGCAGCTGGAAGAAGAGGAAAACTTCGGCTGTGCCATGCAGCTGGTGTTTTCTTCTGTGCTGTCCATGTCTATGCAATCAGCAATCGAGCTAGGCGTTTTCGACATCATAGCGAAAGCCGGTCCTGGTGCCAAGCTGTCTTCATCAGAGATTGCAGCCCATATCGACAGCGGCACCAGGAATTCTGAGGCACCGATGATGTTGGATCGTATTCTAAGGCTCCTAGCCAGTCACTCTATTCTCAGCTGCTCTGTCGTTGCTAATGAAGAAGCTGGGTCTGATTCTCAGAGGCTCTACGGCCTTGGTCCTGTGTCCAACTACTTTGTGACTAATGAAGATGGTGTTTCTTTAGGTCCCATGATGGCATTGGTGCAAGACAAGGTCGTCCTAGACTCCTGGTCCCAACTGAAAGATGCAGTTGTTGAAGGAGGAATTTCATTTAACAGGGTCCACGGCAAGCACTCTTATGAGTACCTAGGTTTAGACCCCAGGTTTAATCAAGTTTTCAACACAGCAATGTTTAACCACACCACTATTGTCACCAAGAAGATTCTTCATCTCTACAAGGGTTTTGAGAAAATTACCCAACTTGTTGATGTTGGTGGTGGTTTGGGAGTCACTATTAGTCTAATCACTTCTAAGCATCCCCATATTAAGGGTATCAATTATGACTTGCCTCATGTCATAAAACATGCCGCTTCATATCCTGGGGTGGAACATGTTGGAGGAGACATGTTTGCAAGTGTTCCATCTGGGGATGTCATTTTGTTGAAGGTTATTTTTCATTTTCCCGAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

269

Amino Acids

29.07

Weight (kDa)

5.76

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AccB1I GGYRCC 3 cut(s) 134, 179, 196
AciI CCGC 2 cut(s) 177, 702
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 187, 438
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 2 cut(s) 13, 661
AflIII ACRYGT 2 cut(s) 724, 738
AgsI TTSAA 3 cut(s) 431, 514, 778
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 5 cut(s) 130, 182, 401, 494, 712
AluBI AGCT 6 cut(s) 13, 49, 97, 142, 252, 278
AluI AGCT 6 cut(s) 13, 49, 97, 142, 252, 278
Alw26I GTCTC 1 cut(s) 729
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 797
AoxI GGCC 2 cut(s) 3, 304
ApeKI GCWGC 4 cut(s) 10, 46, 161, 252
ApoI RAATTY 2 cut(s) 187, 438
AspA2I CCTAGG 1 cut(s) 481
AspS9I GGNCC 6 cut(s) 4, 128, 311, 359, 405, 454
AsuHPI GGTGA 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 797
AvaII GGWCC 5 cut(s) 128, 311, 359, 405, 454
AvrII CCTAGG 1 cut(s) 481
BanI GGYRCC 3 cut(s) 134, 179, 196
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 4 cut(s) 22, 58, 173, 239
BccI CCATC 3 cut(s) 338, 361, 763
BceAI ACGGC 2 cut(s) 319, 475
BciT130I CCWGG 5 cut(s) 132, 184, 403, 496, 714
BcoDI GTCTC 1 cut(s) 729
BfaI CTAG 4 cut(s) 98, 230, 395, 482
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 6 cut(s) 11, 47, 162, 178, 253, 702
BlnI CCTAGG 1 cut(s) 481
BlsI GCNGC 6 cut(s) 12, 48, 163, 179, 254, 703
Bme1390I CCNGG 5 cut(s) 132, 184, 403, 496, 714
Bme18I GGWCC 5 cut(s) 128, 311, 359, 405, 454
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 797
BmgT120I GGNCC 6 cut(s) 4, 128, 311, 359, 405, 454
BmiI GGNNCC 7 cut(s) 136, 181, 198, 227, 361, 407, 455
BmrFI CCNGG 5 cut(s) 132, 184, 403, 496, 714
BmsI GCATC 2 cut(s) 409, 658
BpiI GAAGAC 1 cut(s) 138
BsaJI CCNNGG 5 cut(s) 307, 457, 481, 494, 713
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 661
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 5 cut(s) 132, 184, 403, 496, 714
BseDI CCNNGG 5 cut(s) 307, 457, 481, 494, 713
BseGI GGATG 2 cut(s) 649, 769
BseLI CCNNNNNNNGG 2 cut(s) 13, 661
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 3 cut(s) 183, 262, 305
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 747
BseXI GCAGC 4 cut(s) 22, 58, 173, 239
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 2 cut(s) 5, 306
BshNI GGYRCC 3 cut(s) 134, 179, 196
BsiHKCI CYCGRG 1 cut(s) 797
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 2 cut(s) 345, 391
BslI CCNNNNNNNGG 2 cut(s) 13, 661
BsmAI GTCTC 1 cut(s) 729
BsmFI GGGAC 2 cut(s) 345, 391
BsnI GGCC 2 cut(s) 5, 306
BsoBI CYCGRG 1 cut(s) 797
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 2 cut(s) 177, 702
BspANI GGCC 2 cut(s) 5, 306
BspCNI CTCAG 3 cut(s) 184, 261, 304
BspLI GGNNCC 7 cut(s) 136, 181, 198, 227, 361, 407, 455
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 3 cut(s) 134, 179, 196
BsrDI GCAATG 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 307, 457, 481, 494, 713
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 307, 481
Bst2UI CCWGG 5 cut(s) 132, 184, 403, 496, 714
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 5 cut(s) 192, 221, 248, 291, 645
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 2 cut(s) 649, 769
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 729
BstMBI GATC 1 cut(s) 211
BstNI CCWGG 5 cut(s) 132, 184, 403, 496, 714
BstNSI RCATGY 3 cut(s) 701, 728, 742
BstSCI CCNGG 5 cut(s) 130, 182, 401, 494, 712
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 4 cut(s) 22, 58, 173, 239
BstV2I GAAGAC 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 5, 306
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 649, 769
Cac8I GCNNGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 6 cut(s) 4, 128, 311, 359, 405, 454
Csp6I GTAC 1 cut(s) 478
CviAII CATG 7 cut(s) 43, 73, 364, 686, 698, 725, 739
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 5 cut(s) 192, 221, 248, 291, 645
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DrdI GACNNNNNNGTC 1 cut(s) 389
DriI GACNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 307, 481
Eco47I GGWCC 5 cut(s) 128, 311, 359, 405, 454
Eco88I CYCGRG 1 cut(s) 797
EcoO109I RGGNCCY 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 5 cut(s) 130, 182, 401, 494, 712
EcoT14I CCWWGG 2 cut(s) 307, 481
ErhI CCWWGG 2 cut(s) 307, 481
FaeI CATG 7 cut(s) 46, 76, 367, 689, 701, 728, 742
FaqI GGGAC 2 cut(s) 345, 391
FatI CATG 7 cut(s) 42, 72, 363, 685, 697, 724, 738
Fnu4HI GCNGC 6 cut(s) 11, 47, 162, 178, 253, 702
FokI GGATG 2 cut(s) 636, 776
Fsp4HI GCNGC 6 cut(s) 11, 47, 162, 178, 253, 702
FspBI CTAG 4 cut(s) 98, 230, 395, 482
GluI GCNGC 6 cut(s) 11, 47, 162, 178, 253, 702
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 2 cut(s) 5, 306
HapII CCGG 1 cut(s) 126
Hin1II CATG 7 cut(s) 46, 76, 367, 689, 701, 728, 742
HinfI GANTC 4 cut(s) 287, 398, 556, 621
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 4 cut(s) 154, 193, 286, 294
Hpy188III TCNNGA 1 cut(s) 797
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 2 cut(s) 425, 772
HpyCH4V TGCA 7 cut(s) 10, 46, 82, 161, 379, 422, 746
HpyF3I CTNAG 5 cut(s) 192, 221, 248, 291, 645
Hsp92II CATG 7 cut(s) 46, 76, 367, 689, 701, 728, 742
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 4 cut(s) 22, 58, 173, 239
LweI GCATC 2 cut(s) 409, 658
MaeI CTAG 4 cut(s) 98, 230, 395, 482
MaeIII GTNAC 4 cut(s) 236, 331, 544, 622
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 8 cut(s) 29, 32, 51, 138, 284, 353, 551, 565
MluCI AATT 4 cut(s) 187, 438, 585, 670
MlyI GAGTC 2 cut(s) 392, 630
MmeI TCCRAC 3 cut(s) 189, 345, 709
MnlI CCTC 6 cut(s) 16, 187, 288, 428, 693, 725
MseI TTAA 5 cut(s) 447, 501, 528, 660, 805
MslI CAYNNNNRTG 3 cut(s) 77, 471, 521
MspA1I CMGCKG 4 cut(s) 13, 49, 177, 252
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 5 cut(s) 132, 184, 403, 496, 714
MvaI CCWGG 5 cut(s) 132, 184, 403, 496, 714
NdeII GATC 1 cut(s) 211
NlaIII CATG 7 cut(s) 46, 76, 367, 689, 701, 728, 742
NlaIV GGNNCC 7 cut(s) 136, 181, 198, 227, 361, 407, 455
NmuCI GTSAC 4 cut(s) 236, 331, 544, 622
NspI RCATGY 3 cut(s) 701, 728, 742
PciI ACATGT 2 cut(s) 724, 738
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 2 cut(s) 287, 556
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 6 cut(s) 12, 48, 163, 179, 254, 703
PleI GAGTC 2 cut(s) 392, 629
PpsI GAGTC 2 cut(s) 392, 629
PpuMI RGGWCCY 1 cut(s) 359
PscI ACATGT 2 cut(s) 724, 738
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 5 cut(s) 130, 182, 401, 494, 712
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 5 cut(s) 130, 182, 401, 494, 712
PspN4I GGNNCC 7 cut(s) 136, 181, 198, 227, 361, 407, 455
PspPI GGNCC 6 cut(s) 4, 128, 311, 359, 405, 454
PspPPI RGGWCCY 1 cut(s) 359
PstI CTGCAG 1 cut(s) 12
PsyI GACNNNGTC 1 cut(s) 386
PvuII CAGCTG 3 cut(s) 13, 49, 252
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 3 cut(s) 77, 471, 521
SaqAI TTAA 5 cut(s) 447, 501, 528, 660, 805
SatI GCNGC 6 cut(s) 11, 47, 162, 178, 253, 702
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 6 cut(s) 4, 128, 311, 359, 405, 454
SchI GAGTC 2 cut(s) 392, 630
ScrFI CCNGG 5 cut(s) 132, 184, 403, 496, 714
SfaNI GCATC 2 cut(s) 409, 658
SfcI CTRYAG 1 cut(s) 8
SinI GGWCC 5 cut(s) 128, 311, 359, 405, 454
SmiMI CAYNNNNRTG 3 cut(s) 77, 471, 521
Sse9I AATT 4 cut(s) 187, 438, 585, 670
SsiI CCGC 2 cut(s) 177, 702
SspMI CTAG 4 cut(s) 98, 230, 395, 482
StyD4I CCNGG 5 cut(s) 130, 182, 401, 494, 712
StyI CCWWGG 2 cut(s) 307, 481
TaqI TCGA 3 cut(s) 93, 108, 171
TasI AATT 4 cut(s) 187, 438, 585, 670
TauI GCSGC 2 cut(s) 180, 704
TfiI GAWTC 2 cut(s) 287, 556
Tru1I TTAA 5 cut(s) 447, 501, 528, 660, 805
Tru9I TTAA 5 cut(s) 447, 501, 528, 660, 805
TseFI GTSAC 4 cut(s) 236, 331, 544, 622
TseI GCWGC 4 cut(s) 10, 46, 161, 252
Tsp45I GTSAC 4 cut(s) 236, 331, 544, 622
TspDTI ATGAA 7 cut(s) 138, 285, 354, 432, 551, 696, 779
Tth111I GACNNNGTC 1 cut(s) 386
VpaK11BI GGWCC 5 cut(s) 128, 311, 359, 405, 454
XapI RAATTY 2 cut(s) 187, 438
XceI RCATGY 3 cut(s) 701, 728, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmaJI CCTAGG 1 cut(s) 481
XspI CTAG 4 cut(s) 98, 230, 395, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.