Rorug03G0350700
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
42808952 .. 42809398
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0350700.1

Sequence Viewer

Length: 447 bp
ATGAAATGCGAATGGATTACATCATATCCAGCATCATTGGTTAATCAAAGATGGACCAAAGAAGCGGGGAGAAATCATAATATGGCTGGGATATCGGATGACAAGGGTGTTCAAGTTGCGAGATACGGTGAACTAATGACCAGTTTTGCTAAAATTGTCCACATTGCATCACATAGCGAGGAGGGGTACGATGACGTCAAGGAAGTGCTAAGCCGGCTTGCGATAGAAAGTGAGAAGTATCATCAACCCAACCCCACTGACCCCGAATCTGTTATTGATGGTTCAACCGGCCTGCACCCTAATGTGATAAGGGACCCTGTGCCTTGTAGGAGTAAAGGGTTGAAAGTTAAAACCGGTGTTGGGAGGAAGAAAACCAAAAAAAACTTTGACTTGCACACTTTGTCGACAAAAGGGCCACAACATGAGAACTTGCTTGGCTGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.53

Weight (kDa)

8.75

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 404
AciI CCGC 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 360
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 3 cut(s) 113, 285, 343
AoxI GGCC 2 cut(s) 289, 413
AsiGI ACCGGT 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 54, 313, 413
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 54, 313
BccI CCATC 2 cut(s) 45, 272
BlpI GCTNAGC 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 54, 313
BmgT120I GGNCC 3 cut(s) 54, 313, 413
BmiI GGNNCC 2 cut(s) 314, 315
BmsI GCATC 2 cut(s) 41, 176
Bpu1102I GCTNAGC 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse118I RCCGGY 3 cut(s) 213, 287, 353
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 162
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 291, 415
BshTI ACCGGT 1 cut(s) 353
BsiSI CCGG 3 cut(s) 214, 288, 354
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 2 cut(s) 291, 415
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 1 cut(s) 65
BspANI GGCC 2 cut(s) 291, 415
BspLI GGNNCC 2 cut(s) 314, 315
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 3 cut(s) 213, 287, 353
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 3 cut(s) 213, 287, 353
BssNI GRCGYC 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 215, 219, 293
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 214
BsuRI GGCC 2 cut(s) 291, 415
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 215, 219, 293
Cfr10I RCCGGY 3 cut(s) 213, 287, 353
Cfr13I GGNCC 3 cut(s) 54, 313, 413
Csp6I GTAC 1 cut(s) 187
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 1 cut(s) 422
CviJI RGCY 6 cut(s) 86, 213, 217, 291, 415, 438
CviKI_1 RGCY 6 cut(s) 86, 213, 217, 291, 415, 438
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 209
Eco32I GATATC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 54, 313
EcoO109I RGGNCCY 1 cut(s) 313
EcoRV GATATC 1 cut(s) 93
FaeI CATG 1 cut(s) 425
FaiI YATR 5 cut(s) 25, 78, 83, 174, 423
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 421
FauI CCCGC 1 cut(s) 58
FblI GTMKAC 1 cut(s) 404
FokI GGATG 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 90
HaeIII GGCC 2 cut(s) 291, 415
HapII CCGG 3 cut(s) 214, 288, 354
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 425
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 1 cut(s) 266
HpaII CCGG 3 cut(s) 214, 288, 354
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 131, 160, 405
Hpy188I TCNGA 1 cut(s) 97
Hpy8I GTNNAC 3 cut(s) 131, 160, 405
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 167, 295, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 425
KflI GGGWCCC 1 cut(s) 313
KroI GCCGGC 1 cut(s) 213
KroNI GCCGGC 1 cut(s) 215
LpnPI CCDG 9 cut(s) 42, 72, 154, 227, 301, 305, 330, 367, 424
LweI GCATC 2 cut(s) 41, 176
MaeII ACGT 1 cut(s) 195
MboII GAAGA 1 cut(s) 379
MluCI AATT 1 cut(s) 153
MnlI CCTC 3 cut(s) 172, 175, 357
MroNI GCCGGC 1 cut(s) 213
MseI TTAA 3 cut(s) 42, 348, 445
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 3 cut(s) 214, 288, 354
MwoI GCNNNNNNNGC 1 cut(s) 214
NaeI GCCGGC 1 cut(s) 215
NgoMIV GCCGGC 1 cut(s) 213
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 2 cut(s) 314, 315
PdiI GCCGGC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 266
PinAI ACCGGT 1 cut(s) 353
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 314, 315
PspPI GGNCC 3 cut(s) 54, 313, 413
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 300
SalI GTCGAC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 42, 348, 445
Sau96I GGNCC 3 cut(s) 54, 313, 413
SetI ASST 1 cut(s) 198
SfaNI GCATC 2 cut(s) 41, 176
SinI GGWCC 2 cut(s) 54, 313
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 1 cut(s) 153
SsiI CCGC 1 cut(s) 65
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 404
TasI AATT 1 cut(s) 153
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 3 cut(s) 42, 348, 445
Tru9I TTAA 3 cut(s) 42, 348, 445
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 54, 313
XmiI GTMKAC 1 cut(s) 404
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.