Rmu_sc0010379.1_g000006
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010379.1
OG0000357
Physical Location & Seq
Forward (+)
21593 .. 24638
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010379.1_g000006.1.cds

Sequence Viewer

Length: 609 bp
atgtccacgcaattagcagttgagcttggagttttcgacatcatagccaaagctggtgcgggtgcgggtctctcctcattgcagatagcagctcagataggcaccgagaaccctgatgtgcccatgatgttggatcggatcctcaagctactggcaagtcactttgtgctcaattgcattgtggttaatgctaatgatgatgatcatagggaggcggccggagcagtccgagtcgcggcggaggacaaggaggtggtggtggaaagacggtggcttttgcatattgtgatcgatggatggaaaatactttgggtaccaaaccggagcaaacctccgccaaaaaaaaaaaaaccggagcaaaccaccgcaggtgcaactgcaaaagcaccaattccaaagaagcagcacctcaggattaaggagatgtggagactcagcttcgaagctctgactcctcgttgcttaccagcagcaatcggttctcgtcgcctaccatcttcgattcctcgtcgcctaccagtttcgattcctcgtggcctacaagctccgactccgagatcgcttaccagaggcaaccggtcctcgtcgcctaccagctctaactcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

202

Amino Acids

22.02

Weight (kDa)

10.45

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 359
Acc65I GGTACC 1 cut(s) 313
AccB1I GGYRCC 2 cut(s) 101, 313
AccII CGCG 1 cut(s) 236
AciI CCGC 7 cut(s) 59, 65, 215, 236, 239, 335, 366
AclWI GGATC 3 cut(s) 133, 141, 146
AcoI YGGCCR 1 cut(s) 216
AdeI CACNNNGTG 1 cut(s) 166
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 235
AgeI ACCGGT 1 cut(s) 576
AluBI AGCT 8 cut(s) 25, 53, 92, 148, 438, 446, 545, 597
AluI AGCT 8 cut(s) 25, 53, 92, 148, 438, 446, 545, 597
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 74, 424
AlwI GGATC 3 cut(s) 133, 141, 146
AoxI GGCC 2 cut(s) 216, 535
ApeKI GCWGC 3 cut(s) 89, 403, 470
AsiGI ACCGGT 1 cut(s) 576
Asp718I GGTACC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 579
AsuII TTCGAA 1 cut(s) 441
AvaII GGWCC 1 cut(s) 579
AxyI CCTNAGG 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 123
BamHI GGATCC 1 cut(s) 138
BanI GGYRCC 2 cut(s) 101, 313
BauI CACGAG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 101, 415, 482
BccI CCATC 3 cut(s) 287, 291, 502
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 74, 424
BfaI CTAG 1 cut(s) 607
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 5 cut(s) 90, 216, 237, 404, 471
BlsI GCNGC 5 cut(s) 91, 217, 238, 405, 472
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 3 cut(s) 103, 140, 315
BplI GAGNNNNNCTC 2 cut(s) 316, 348
Bpu14I TTCGAA 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 74
BsaWI WCCGGW 3 cut(s) 321, 352, 576
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 576
Bse1I ACTGG 2 cut(s) 156, 518
Bse21I CCTNAGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 291
BseGI GGATG 1 cut(s) 302
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 3 cut(s) 107, 424, 448
BseNI ACTGG 2 cut(s) 156, 518
BseRI GAGGAG 2 cut(s) 64, 444
BseSI GKGCMC 1 cut(s) 123
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 3 cut(s) 101, 415, 482
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 218, 537
BshNI GGYRCC 2 cut(s) 101, 313
BshTI ACCGGT 1 cut(s) 576
BshVI ATCGAT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 4 cut(s) 219, 322, 353, 577
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 74, 424
BsnI GGCC 2 cut(s) 218, 537
Bso31I GGTCTC 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 123, 171
Bsp143I GATC 5 cut(s) 133, 138, 202, 288, 557
BspACI CCGC 7 cut(s) 59, 65, 215, 236, 239, 335, 366
BspANI GGCC 2 cut(s) 218, 537
BspCNI CTCAG 3 cut(s) 106, 423, 447
BspDI ATCGAT 1 cut(s) 291
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 3 cut(s) 103, 140, 315
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 3 cut(s) 133, 141, 146
BspT104I TTCGAA 1 cut(s) 441
BspT107I GGYRCC 2 cut(s) 101, 313
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 576
BsrI ACTGG 2 cut(s) 156, 518
BssAI RCCGGY 1 cut(s) 576
BssMI GATC 5 cut(s) 133, 138, 202, 288, 557
BssSI CACGAG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 441
BstDEI CTNAG 3 cut(s) 93, 410, 434
BstF5I GGATG 1 cut(s) 302
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 5 cut(s) 136, 141, 205, 291, 560
BstMAI GTCTC 2 cut(s) 74, 424
BstMBI GATC 5 cut(s) 133, 138, 202, 288, 557
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 101, 415, 482
BstX2I RGATCY 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 138
BstZI CGGCCG 1 cut(s) 216
Bsu15I ATCGAT 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 410
BsuRI GGCC 2 cut(s) 218, 537
BsuTUI ATCGAT 1 cut(s) 291
BtsCI GGATG 1 cut(s) 302
BveI ACCTGC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 576
Cfr13I GGNCC 1 cut(s) 579
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 1 cut(s) 314
CspAI ACCGGT 1 cut(s) 576
CviAII CATG 1 cut(s) 124
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 3 cut(s) 93, 410, 434
DpnI GATC 5 cut(s) 135, 140, 204, 290, 559
DpnII GATC 5 cut(s) 133, 138, 202, 288, 557
DraIII CACNNNGTG 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 216
EagI CGGCCG 1 cut(s) 216
EciI GGCGGA 2 cut(s) 254, 324
EclXI CGGCCG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 579
Eco52I CGGCCG 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 410
FaeI CATG 1 cut(s) 127
FaiI YATR 4 cut(s) 44, 125, 207, 282
FatI CATG 1 cut(s) 123
FauI CCCGC 2 cut(s) 52, 58
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 5 cut(s) 90, 216, 237, 404, 471
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 5 cut(s) 90, 216, 237, 404, 471
FspBI CTAG 1 cut(s) 607
GluI GCNGC 5 cut(s) 90, 216, 237, 404, 471
HaeIII GGCC 2 cut(s) 218, 537
HapII CCGG 4 cut(s) 219, 322, 353, 577
Hin1II CATG 1 cut(s) 127
HinfI GANTC 6 cut(s) 231, 432, 451, 502, 526, 550
HpaII CCGG 4 cut(s) 219, 322, 353, 577
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 96, 138, 230, 450, 549, 555
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 489, 513, 589
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 5 cut(s) 82, 177, 280, 374, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 3 cut(s) 93, 410, 434
Hsp92II CATG 1 cut(s) 127
KpnI GGTACC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 5 cut(s) 133, 138, 202, 288, 557
LmnI GCTCC 4 cut(s) 221, 324, 355, 550
Lsp1109I GCAGC 3 cut(s) 101, 415, 482
MaeI CTAG 1 cut(s) 607
MaeIII GTNAC 1 cut(s) 158
MalI GATC 5 cut(s) 135, 140, 204, 290, 559
MboI GATC 5 cut(s) 133, 138, 202, 288, 557
MboII GAAGA 1 cut(s) 489
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 123, 171
MluCI AATT 3 cut(s) 11, 172, 390
MlyI GAGTC 4 cut(s) 240, 426, 445, 544
MmeI TCCRAC 2 cut(s) 111, 572
MseI TTAA 2 cut(s) 186, 417
MspI CCGG 4 cut(s) 219, 322, 353, 577
MunI CAATTG 1 cut(s) 172
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 5 cut(s) 133, 138, 202, 288, 557
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 3 cut(s) 103, 140, 315
NmuCI GTSAC 1 cut(s) 158
NspV TTCGAA 1 cut(s) 441
PaqCI CACCTGC 1 cut(s) 359
PfeI GAWTC 2 cut(s) 502, 526
PinAI ACCGGT 1 cut(s) 576
PkrI GCNGC 5 cut(s) 91, 217, 238, 405, 472
PleI GAGTC 4 cut(s) 239, 426, 445, 544
PpsI GAGTC 4 cut(s) 239, 426, 445, 544
PspN4I GGNNCC 3 cut(s) 103, 140, 315
PspPI GGNCC 1 cut(s) 579
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 186, 417
SatI GCNGC 5 cut(s) 90, 216, 237, 404, 471
Sau3AI GATC 5 cut(s) 133, 138, 202, 288, 557
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 4 cut(s) 240, 426, 445, 544
SduI GDGCHC 2 cut(s) 123, 171
SfuI TTCGAA 1 cut(s) 441
SinI GGWCC 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 11, 172, 390
SsiI CCGC 7 cut(s) 59, 65, 215, 236, 239, 335, 366
SspMI CTAG 1 cut(s) 607
TaaI ACNGT 1 cut(s) 270
TaqI TCGA 5 cut(s) 36, 291, 441, 500, 524
TasI AATT 3 cut(s) 11, 172, 390
TauI GCSGC 2 cut(s) 218, 239
TfiI GAWTC 2 cut(s) 502, 526
Tru1I TTAA 2 cut(s) 186, 417
Tru9I TTAA 2 cut(s) 186, 417
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 3 cut(s) 89, 403, 470
Tsp45I GTSAC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 579
XspI CTAG 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.