RLG00000009555
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000357
Physical Location & Seq
Forward (+)
54485885 .. 54488532
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009555

Sequence Viewer

Length: 918 bp
ATGGCCTCTCCACTGGAAATAGAAATACTCGGGTACCCTAGCATTCATGTTGATGCTAAAAGAAAAGAAGAAGAAAGCAGCTTTGATCATGCTGTTCAGCTAATGCTCTCGTCTGTGCTGCCCATGCTACTCACCGCACACTCCGTGCTCAGTTGCTCTGTGGTCACTGGCCAAAGGCTTTATAGCCTCACCGCGGTGTCCAAGCATTTTGTGACTGGTGAAGATGGTGCTTCTTTAAGCCCCGTCATGGCATCAATTCAAGCCAATGTCGTCATGAACAGTTGGTCGCAAGTGAAAGATGCAATTGTTGAAGGAGGAATTCCGTTTAATAGGGTCCATGGCAAACACTTCTTTGAGTATGCAGATTCGGACCCCAGGTTTAATCAAGTTTTTAATTCGGGAATGGTCAACCTAACCACTTTGGTTATGAGGAGGATTCTTGATAGCTACCAGGGGCTAGGGGTGGCTCTTGGTCTCATCACGTCCAGATATCCCCATATTAAGGGAATCAACTACGACTTGCCCCATGTTATAAAACATGCTCCCCATTATCCTGGTGTGCAACATGTAGGAGGAGACATGTTTTCAAATGTTCCAAGTGGGGATGCCATTTTTATGAAGAACATACTTCATGACTGGATGGATGAGCAGTGCATAAAGCTATTGAAAAATTGTTACACAGCGATTCCAGATAATGGAAAAGTAATAGTTGTGGAAGCACTAGTTTCGGTTGAGCCAGACACTAGCCCAGCTGAGAAGATCACCTCAGATTTTGATGTGCTTATGATGACACTATCCCCAGGAGGGAAGGAAAGGACCCAACACGAATTTATGGACTTAGCAAATGCTGCTGGATTTAGTGGCATTAAATATGAATGCCTTTCCAGTTATCTTCGTGTTATGGAGTTCATAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

306

Amino Acids

33.66

Weight (kDa)

5.77

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 95 - 287 2.4e-53 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 533
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 695
AccII CGCG 1 cut(s) 194
AciI CCGC 3 cut(s) 135, 192, 194
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 2 cut(s) 318, 827
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 5 cut(s) 193, 247, 502, 695, 804
AflIII ACRYGT 2 cut(s) 565, 579
AgsI TTSAA 4 cut(s) 260, 311, 588, 667
AhlI ACTAGT 1 cut(s) 721
AjiI CACGTC 1 cut(s) 483
AjnI CCWGG 4 cut(s) 374, 450, 553, 799
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 5 cut(s) 81, 100, 447, 661, 752
AluI AGCT 5 cut(s) 81, 100, 447, 661, 752
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 479, 570
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 2 cut(s) 3, 169
ApeKI GCWGC 3 cut(s) 78, 118, 848
ApoI RAATTY 2 cut(s) 318, 827
Asp718I GGTACC 1 cut(s) 33
AspS9I GGNCC 3 cut(s) 334, 370, 816
AsuHPI GGTGA 4 cut(s) 124, 181, 230, 754
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 3 cut(s) 334, 370, 816
BaeI ACNNNNGTAYC 2 cut(s) 17, 50
BalI TGGCCA 1 cut(s) 171
BanI GGYRCC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 90, 105, 835
BccI CCATC 2 cut(s) 218, 634
BcgI CGANNNNNNTGC 2 cut(s) 708, 742
BciT130I CCWGG 4 cut(s) 376, 452, 555, 801
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 479, 570
BcuI ACTAGT 1 cut(s) 721
BfaI CTAG 4 cut(s) 39, 458, 722, 744
BisI GCNGC 3 cut(s) 79, 119, 849
BlsI GCNGC 3 cut(s) 80, 120, 850
Bme1390I CCNGG 4 cut(s) 376, 452, 555, 801
Bme18I GGWCC 3 cut(s) 334, 370, 816
BmeT110I CYCGRG 1 cut(s) 29
BmgBI CACGTC 1 cut(s) 483
BmgT120I GGNCC 3 cut(s) 334, 370, 816
BmiI GGNNCC 4 cut(s) 35, 335, 372, 818
BmrFI CCNGG 4 cut(s) 376, 452, 555, 801
BmsI GCATC 4 cut(s) 43, 260, 289, 595
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 5 cut(s) 192, 337, 374, 451, 799
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 247, 502, 695, 804
Bse1I ACTGG 5 cut(s) 18, 172, 220, 641, 885
BseBI CCWGG 4 cut(s) 376, 452, 555, 801
BseDI CCNNGG 5 cut(s) 192, 337, 374, 451, 799
BseGI GGATG 3 cut(s) 610, 645, 649
BseLI CCNNNNNNNGG 5 cut(s) 193, 247, 502, 695, 804
BseMII CTCAG 3 cut(s) 163, 744, 780
BseNI ACTGG 5 cut(s) 18, 172, 220, 641, 885
BseRI GAGGAG 2 cut(s) 445, 588
BseXI GCAGC 3 cut(s) 90, 105, 835
BseYI CCCAGC 1 cut(s) 748
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 2 cut(s) 5, 171
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 29
BslI CCNNNNNNNGG 5 cut(s) 193, 247, 502, 695, 804
BsmAI GTCTC 2 cut(s) 479, 570
BsmI GAATGC 2 cut(s) 42, 881
BsnI GGCC 2 cut(s) 5, 171
Bso31I GGTCTC 1 cut(s) 479
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 85, 759
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 3 cut(s) 135, 192, 194
BspANI GGCC 2 cut(s) 5, 171
BspCNI CTCAG 3 cut(s) 162, 745, 779
BspFNI CGCG 1 cut(s) 194
BspHI TCATGA 2 cut(s) 273, 631
BspLI GGNNCC 4 cut(s) 35, 335, 372, 818
BspT107I GGYRCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 479
BsrI ACTGG 5 cut(s) 18, 172, 220, 641, 885
BssECI CCNNGG 5 cut(s) 192, 337, 374, 451, 799
BssMI GATC 2 cut(s) 85, 759
BssT1I CCWWGG 1 cut(s) 337
Bst2UI CCWGG 4 cut(s) 376, 452, 555, 801
Bst4CI ACNGT 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 848
BstDEI CTNAG 4 cut(s) 149, 753, 766, 838
BstDSI CCRYGG 2 cut(s) 192, 337
BstF5I GGATG 3 cut(s) 610, 645, 649
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 2 cut(s) 88, 762
BstMAI GTCTC 2 cut(s) 479, 570
BstMBI GATC 2 cut(s) 85, 759
BstMWI GCNNNNNNNGC 2 cut(s) 124, 848
BstNI CCWGG 4 cut(s) 376, 452, 555, 801
BstNSI RCATGY 3 cut(s) 542, 569, 583
BstSCI CCNGG 4 cut(s) 374, 450, 553, 799
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 90, 105, 835
BstXI CCANNNNNNTGG 1 cut(s) 554
BsuRI GGCC 2 cut(s) 5, 171
BtgI CCRYGG 2 cut(s) 192, 337
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 3 cut(s) 610, 645, 649
BtsI GCAGTG 1 cut(s) 656
BtsIMutI CAGTG 3 cut(s) 11, 165, 656
CciI TCATGA 2 cut(s) 273, 631
Cfr13I GGNCC 3 cut(s) 334, 370, 816
Cfr42I CCGCGG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 34
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 4 cut(s) 149, 753, 766, 838
DpnI GATC 2 cut(s) 87, 761
DpnII GATC 2 cut(s) 85, 759
DraIII CACNNNGTG 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 479
Eco32I GATATC 1 cut(s) 491
Eco47I GGWCC 3 cut(s) 334, 370, 816
Eco88I CYCGRG 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 816
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 4 cut(s) 374, 450, 553, 799
EcoRV GATATC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 3 cut(s) 79, 119, 849
FokI GGATG 3 cut(s) 617, 652, 656
Fsp4HI GCNGC 3 cut(s) 79, 119, 849
FspBI CTAG 4 cut(s) 39, 458, 722, 744
GluI GCNGC 3 cut(s) 79, 119, 849
GsaI CCCAGC 1 cut(s) 752
HaeIII GGCC 2 cut(s) 5, 171
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 4 cut(s) 365, 436, 507, 685
HphI GGTGA 4 cut(s) 124, 181, 230, 754
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 370, 769
Hpy188III TCNNGA 6 cut(s) 274, 399, 440, 486, 632, 689
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 305, 802
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 4 cut(s) 302, 362, 562, 654
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 848
HpyF3I CTNAG 4 cut(s) 149, 753, 766, 838
HpySE526I ACGT 1 cut(s) 482
KpnI GGTACC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 85
KspI CCGCGG 1 cut(s) 195
Kzo9I GATC 2 cut(s) 85, 759
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 3 cut(s) 90, 105, 835
LweI GCATC 4 cut(s) 43, 260, 289, 595
MaeI CTAG 4 cut(s) 39, 458, 722, 744
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 3 cut(s) 163, 211, 674
MalI GATC 2 cut(s) 87, 761
MboI GATC 2 cut(s) 85, 759
MboII GAAGA 6 cut(s) 80, 83, 233, 631, 769, 884
MfeI CAATTG 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 6 cut(s) 255, 303, 318, 394, 670, 827
MluNI TGGCCA 1 cut(s) 171
MnlI CCTC 8 cut(s) 16, 197, 308, 423, 426, 566, 775, 797
Mox20I TGGCCA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 171
MseI TTAA 6 cut(s) 236, 327, 381, 393, 501, 867
MslI CAYNNNNRTG 3 cut(s) 51, 194, 614
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 2 cut(s) 194, 752
MspR9I CCNGG 4 cut(s) 376, 452, 555, 801
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 2 cut(s) 42, 881
MvaI CCWGG 4 cut(s) 376, 452, 555, 801
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 124, 848
NcoI CCATGG 1 cut(s) 337
NdeII GATC 2 cut(s) 85, 759
NlaIV GGNNCC 4 cut(s) 35, 335, 372, 818
NmuCI GTSAC 2 cut(s) 163, 211
NspI RCATGY 3 cut(s) 542, 569, 583
OliI CACNNNNGTG 1 cut(s) 194
PagI TCATGA 2 cut(s) 273, 631
PciI ACATGT 2 cut(s) 565, 579
PctI GAATGC 2 cut(s) 42, 881
PfeI GAWTC 4 cut(s) 365, 436, 507, 685
PflMI CCANNNNNTGG 1 cut(s) 695
PkrI GCNGC 3 cut(s) 80, 120, 850
PpuMI RGGWCCY 1 cut(s) 816
PscI ACATGT 2 cut(s) 565, 579
PsiI TTATAA 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 816
Psp6I CCWGG 4 cut(s) 374, 450, 553, 799
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 4 cut(s) 374, 450, 553, 799
PspN4I GGNNCC 4 cut(s) 35, 335, 372, 818
PspPI GGNCC 3 cut(s) 334, 370, 816
PspPPI RGGWCCY 1 cut(s) 816
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 3 cut(s) 51, 194, 614
SacII CCGCGG 1 cut(s) 195
SaqAI TTAA 6 cut(s) 236, 327, 381, 393, 501, 867
SatI GCNGC 3 cut(s) 79, 119, 849
Sau3AI GATC 2 cut(s) 85, 759
Sau96I GGNCC 3 cut(s) 334, 370, 816
ScrFI CCNGG 4 cut(s) 376, 452, 555, 801
SduI GDGCHC 1 cut(s) 150
SetI ASST 9 cut(s) 83, 102, 380, 414, 449, 485, 663, 754, 767
SfaNI GCATC 4 cut(s) 43, 260, 289, 595
Sfr303I CCGCGG 1 cut(s) 195
SgrBI CCGCGG 1 cut(s) 195
SinI GGWCC 3 cut(s) 334, 370, 816
SmiMI CAYNNNNRTG 3 cut(s) 51, 194, 614
SpeI ACTAGT 1 cut(s) 721
Sse9I AATT 6 cut(s) 255, 303, 318, 394, 670, 827
SsiI CCGC 3 cut(s) 135, 192, 194
SspMI CTAG 4 cut(s) 39, 458, 722, 744
StyD4I CCNGG 4 cut(s) 374, 450, 553, 799
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 485
TasI AATT 6 cut(s) 255, 303, 318, 394, 670, 827
TfiI GAWTC 4 cut(s) 365, 436, 507, 685
Tru1I TTAA 6 cut(s) 236, 327, 381, 393, 501, 867
Tru9I TTAA 6 cut(s) 236, 327, 381, 393, 501, 867
TscAI CASTG 3 cut(s) 18, 172, 656
TseFI GTSAC 2 cut(s) 163, 211
TseI GCWGC 3 cut(s) 78, 118, 848
Tsp45I GTSAC 2 cut(s) 163, 211
TspDTI ATGAA 6 cut(s) 35, 290, 620, 632, 888, 898
TspGWI ACGGA 2 cut(s) 133, 312
TspRI CASTG 3 cut(s) 18, 172, 656
Van91I CCANNNNNTGG 1 cut(s) 695
VpaK11BI GGWCC 3 cut(s) 334, 370, 816
XapI RAATTY 2 cut(s) 318, 827
XceI RCATGY 3 cut(s) 542, 569, 583
XspI CTAG 4 cut(s) 39, 458, 722, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.