Rh3DG107500
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000357
Physical Location & Seq
Reverse (-)
8657906 .. 8658790
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG107500.1

Sequence Viewer

Length: 579 bp
ATGGCCTCTTCACTGGAAACAAAACCCCAAGCCATAGTTCTTGACGATGAAAGAAAGCAAGAAGAAGAAAGCTTTCATTATGCTGTGCAGCTGGTGGTTTCATCTGCGCTGCCCATGTCCATGCAATCAGCCATTGAGCTCGGACTTTTTGATATCATAGCCAGAGCAGGTTCGGGTGCGGGGCTCTCTGCATCCCATATTGCTGCCCAGATTGGCACCCAGAATTCTGAGGCATCCTTTATGCTGGATCGAATCCTTAGGCTCCTCGCCACTCACTCTGTACTTGGTTGTTCTCTGGTTGATGGCCAAAGGCTCTACAGGCTCTCCGGGCCAAAAACTCCTCTCAAAACTCATATCTCTCTCTCTCTCTCTCTCCAAATTAAAAATTTGTTTGGCTTTGTACCAGTTCAGCTTTTTTCTGACCAATTTCACTGTTCTTCATCTTCACTTCTTCCCCAATTCGAAAAGACCAAAACCAAGAAAACCATCCAACAAGTTCATCTAAAATACGAAATCAACAAATCCCAAACAAAGATCCTCATTCAATCTAGCACCAAGAAGGCTGCTGCAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

192

Amino Acids

21.07

Weight (kDa)

9.52

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 30 - 108 7.3e-16 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 255, 529
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 2 cut(s) 223, 385
AfaI GTAC 2 cut(s) 282, 402
AgsI TTSAA 1 cut(s) 545
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 4 cut(s) 72, 91, 139, 412
AluI AGCT 4 cut(s) 72, 91, 139, 412
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 2 cut(s) 255, 529
AoxI GGCC 3 cut(s) 3, 304, 329
ApeKI GCWGC 5 cut(s) 88, 109, 203, 563, 566
ApoI RAATTY 2 cut(s) 223, 385
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 257
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 2 cut(s) 141, 186
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 5 cut(s) 96, 100, 190, 550, 553
BccI CCATC 2 cut(s) 296, 494
BcnI CCSGG 1 cut(s) 328
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 5 cut(s) 89, 110, 204, 564, 567
BlsI GCNGC 5 cut(s) 90, 111, 205, 565, 568
Bme1390I CCNGG 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 217, 263
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 2 cut(s) 200, 242
Bpu14I TTCGAA 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bse1I ACTGG 2 cut(s) 18, 404
Bse21I CCTNAGG 1 cut(s) 257
BseGI GGATG 3 cut(s) 191, 233, 486
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 18, 404
BseRI GAGGAG 2 cut(s) 254, 330
BseXI GCAGC 5 cut(s) 96, 100, 190, 550, 553
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 3 cut(s) 5, 306, 331
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 327
BsnI GGCC 3 cut(s) 5, 306, 331
Bsp119I TTCGAA 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 141, 186
Bsp143I GATC 2 cut(s) 247, 534
BspACI CCGC 1 cut(s) 179
BspANI GGCC 3 cut(s) 5, 306, 331
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 217, 263
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 2 cut(s) 255, 529
BspT104I TTCGAA 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 2 cut(s) 18, 404
BssMI GATC 2 cut(s) 247, 534
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 228, 257
BstF5I GGATG 3 cut(s) 191, 233, 486
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 250, 537
BstMBI GATC 2 cut(s) 247, 534
BstMWI GCNNNNNNNGC 2 cut(s) 319, 328
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 316
BstV1I GCAGC 5 cut(s) 96, 100, 190, 550, 553
BstX2I RGATCY 1 cut(s) 534
BstYI RGATCY 1 cut(s) 534
Bsu36I CCTNAGG 1 cut(s) 257
BsuRI GGCC 3 cut(s) 5, 306, 331
BtsCI GGATG 3 cut(s) 191, 233, 486
BtsIMutI CAGTG 2 cut(s) 11, 430
BveI ACCTGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 281, 401
CviAII CATG 2 cut(s) 115, 121
CviQI GTAC 2 cut(s) 281, 401
DdeI CTNAG 2 cut(s) 228, 257
DpnI GATC 2 cut(s) 249, 536
DpnII GATC 2 cut(s) 247, 534
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 141, 186
Eco32I GATATC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 139
Eco81I CCTNAGG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 141, 186
FaeI CATG 2 cut(s) 118, 124
FaiI YATR 8 cut(s) 35, 81, 116, 122, 158, 198, 242, 354
FatI CATG 2 cut(s) 114, 120
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 5 cut(s) 89, 110, 204, 564, 567
FokI GGATG 3 cut(s) 178, 220, 473
FriOI GRGCYC 2 cut(s) 141, 186
Fsp4HI GCNGC 5 cut(s) 89, 110, 204, 564, 567
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 108
GluI GCNGC 5 cut(s) 89, 110, 204, 564, 567
HaeIII GGCC 3 cut(s) 5, 306, 331
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 118, 124
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 1 cut(s) 252
HpaII CCGG 1 cut(s) 327
Hpy188I TCNGA 3 cut(s) 143, 229, 421
Hpy188III TCNNGA 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 88, 124, 191, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 319, 328
HpyF3I CTNAG 2 cut(s) 228, 257
Hsp92II CATG 2 cut(s) 118, 124
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 2 cut(s) 247, 534
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 5 cut(s) 96, 100, 190, 550, 553
LweI GCATC 2 cut(s) 200, 242
MaeI CTAG 1 cut(s) 549
MalI GATC 2 cut(s) 249, 536
MboI GATC 2 cut(s) 247, 534
MboII GAAGA 5 cut(s) 74, 77, 429, 435, 443
MflI RGATCY 1 cut(s) 534
MhlI GDGCHC 2 cut(s) 141, 186
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 5 cut(s) 223, 378, 385, 425, 458
MluNI TGGCCA 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 5 cut(s) 16, 223, 275, 351, 548
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 72
MscI TGGCCA 1 cut(s) 306
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 328
MwoI GCNNNNNNNGC 2 cut(s) 319, 328
NciI CCSGG 1 cut(s) 328
NdeII GATC 2 cut(s) 247, 534
NlaIII CATG 2 cut(s) 118, 124
NlaIV GGNNCC 2 cut(s) 217, 263
NspV TTCGAA 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 5 cut(s) 90, 111, 205, 565, 568
Psp124BI GAGCTC 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 217, 263
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 1 cut(s) 534
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 2 cut(s) 282, 402
RsaNI GTAC 2 cut(s) 281, 401
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 89, 110, 204, 564, 567
Sau3AI GATC 2 cut(s) 247, 534
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 2 cut(s) 141, 186
SetI ASST 5 cut(s) 74, 93, 141, 172, 414
SfaNI GCATC 2 cut(s) 200, 242
SfcI CTRYAG 1 cut(s) 316
SfuI TTCGAA 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 5 cut(s) 223, 378, 385, 425, 458
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 549
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 250, 462
TasI AATT 5 cut(s) 223, 378, 385, 425, 458
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 18, 437
TseI GCWGC 5 cut(s) 88, 109, 203, 563, 566
TspDTI ATGAA 5 cut(s) 63, 65, 90, 429, 488
TspRI CASTG 2 cut(s) 18, 437
XapI RAATTY 2 cut(s) 223, 385
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.