Rmu_sc0000250.1_g000010
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000250.1
Physical Location & Seq
Forward (+)
36764 .. 38134
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000250.1_g000010.1.cds

Sequence Viewer

Length: 1020 bp
atggcctctccactggaaatagaaatactcgggtgccctagcattcatgttgatgctaaaagaaaaggagaagaaagcagctttgatcatgctgttcagctaatgctctcttctgtgctgcccatgtcaatgcagttggcaattgacttgggcctttttgatgtcatctccaaagcgggtacagatgccaagctctctgcattagacatagcagccaagattggcaccaagaacccccacgcaccggttacattggaccgcatcctcaggctactcaccgcacactccgtgctcagttgctctgtggtcactggccaaaggctttatagcctcaccgcggtgtccaagcattttgtgactagtgaagatggtgcttctttaagccccgtcatggcatcaattcaagccaatgtcgttatgaacagttggtcacaagtgaaagatgcaattgttgaaggaggaattccgtttaatagggtccatggcaaacacttctttgagtatgcagattcggaccctaggtttaatcaagtttttaattcgggaatggtcaacctcaccactttggttatgaggaggattcttgatagctaccagggttttgagcacctcacccaggttgttgatgttgggggagggctaggggtggctcttggtctcatcacttccagatatcctcatgttaagggaatcaactacgacttgccccatgttataaaacatgctccccattatcctggtgtgcaacatgtaggaggagacatgttttcaaatgttccaagtggggatgccatttttatgaaggcggcagtgcggggcttgccggacggaggccggaggcatcccagacagcttctgggcagcaatcaaagtcggaggagatcgaggttgaaggattctgggcagcgacctcacttgcaactgcaaggttctaggcagcactgcaacctttttgccggcgactccacccgactgcagactggtccgtctggcaagcggcgcagcgtcgtaaaggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

339

Amino Acids

36.78

Weight (kDa)

9.65

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000357)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17810 FvH4_7g17811 FvH4_7g17820 FvH4_7g17830
malus_domestica MD00G1100700.v1.1 MD01G1089600.v1.1 MD01G1089800.v1.1 MD01G1090400.v1.1 MD01G1090500.v1.1 MD01G1090800.v1.1 MD04G1141100.v1.1 MD07G1161000.v1.1 MD07G1161100.v1.1 MD10G1030000.v1.1 MD10G1030200.v1.1 MD15G1409200.v1.1 MD15G1409700.v1.1
prunus_persica Prupe.2G199100_v2.0.a1 Prupe.2G199100_v2.0.a1 Prupe.2G199300_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199400_v2.0.a1 Prupe.2G199500_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199600_v2.0.a1 Prupe.2G199800_v2.0.a1 Prupe.2G200100_v2.0.a1 Prupe.2G200100_v2.0.a1
pyrus_communis pycom01g11360 pycom01g11370 pycom01g11400 pycom01g11440 pycom01g11480 pycom01g11490 pycom07g15690 pycom08g12100
rosa_chinensis RchiOBHm_Chr1g0317931 RchiOBHm_Chr1g0361211 RchiOBHm_Chr1g0361221 RchiOBHm_Chr1g0361241 RchiOBHm_Chr1g0367691 RchiOBHm_Chr4g0390171 RchiOBHm_Chr4g0396271 RchiOBHm_Chr6g0286421
rosa_laevigata RLG00000002555 RLG00000009555 RLG00000027275 RLG00000027731 RLG00000027732 RLG00000027734 RLG00000027738 RLG00000030575
rosa_multiflora Rmu_co8470451.1_g000001 Rmu_sc0000250.1_g000010 Rmu_sc0010379.1_g000006 Rmu_sc0011132.1_g000005 Rmu_sc0011132.1_g000007 Rmu_sc0038028.1_g000001 Rmu_ssc0000008.1_g000043 Rmu_ssc0000234.1_g000002 Rmu_ssc0000418.1_g000001
rosa_roxburghii Rroxscaffold_2G00116370 Rroxscaffold_4G00289300 Rroxscaffold_4G00295130 Rroxscaffold_4G00295140 Rroxscaffold_4G00295160 Rroxscaffold_4G00295190 Rroxscaffold_4G00295220 Rroxscaffold_4G00330100 Rroxscaffold_5G00341100
rosa_rugosa Rorug01G0287600 Rorug01G0287700 Rorug01G0336200 Rorug01G0336200 Rorug03G0350700
rosa_samantha Rh1AG030300 Rh1AG298500 Rh1AG298600 Rh1AG298700 Rh1AG298900 Rh1BG262400 Rh1BG262500 Rh1BG262800 Rh1BG304800 Rh1CG029000 Rh1CG279800 Rh1CG279900 Rh1CG280000 Rh1CG280100 Rh1CG280200 Rh1CG320500 Rh1DG041200 Rh1DG292700 Rh1DG292800 Rh1DG337100 Rh3DG107500 Rh4AG128100 Rh4BG024900 Rh4CG072700 Rh4DG063000 Rh6CG295900 Rh6DG287700
rosa_wichuraiana Rw1G002290 Rw1G026410 Rw1G026420 Rw1G026440 Rw4G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AasI GACNNNNNNGTC 1 cut(s) 985
AccB1I GGYRCC 2 cut(s) 33, 224
AccII CGCG 1 cut(s) 338
AciI CCGC 8 cut(s) 176, 259, 279, 336, 338, 806, 814, 997
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 462
AdeI CACNNNGTG 1 cut(s) 289
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 5 cut(s) 244, 337, 391, 616, 830
AflIII ACRYGT 2 cut(s) 748, 762
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 4 cut(s) 404, 455, 771, 892
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 3 cut(s) 594, 615, 736
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 5 cut(s) 81, 100, 193, 591, 853
AluI AGCT 5 cut(s) 81, 100, 193, 591, 853
Alw21I GWGCWC 2 cut(s) 294, 609
Alw26I GTCTC 2 cut(s) 662, 753
AlwNI CAGNNNCTG 1 cut(s) 856
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 4 cut(s) 3, 151, 313, 832
ApeKI GCWGC 7 cut(s) 78, 118, 212, 861, 904, 937, 1002
ApoI RAATTY 1 cut(s) 462
AsiGI ACCGGT 1 cut(s) 244
AspA2I CCTAGG 1 cut(s) 518
AspLEI GCGC 1 cut(s) 1002
AspS9I GGNCC 5 cut(s) 151, 256, 478, 514, 983
AsuHPI GGTGA 4 cut(s) 268, 325, 550, 604
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 4 cut(s) 256, 478, 514, 983
AvrII CCTAGG 1 cut(s) 518
AxyI CCTNAGG 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 38
BalI TGGCCA 1 cut(s) 315
BanI GGYRCC 2 cut(s) 33, 224
Bbv12I GWGCWC 2 cut(s) 294, 609
BbvI GCAGC 7 cut(s) 90, 105, 224, 873, 916, 949, 1014
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 3 cut(s) 596, 617, 738
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 662, 753
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 5 cut(s) 39, 360, 519, 641, 933
BfmI CTRYAG 1 cut(s) 974
BisI GCNGC 9 cut(s) 79, 119, 213, 807, 862, 905, 938, 998, 1003
BlnI CCTAGG 1 cut(s) 518
BlsI GCNGC 9 cut(s) 80, 120, 214, 808, 863, 906, 939, 999, 1004
Bme1390I CCNGG 3 cut(s) 596, 617, 738
Bme18I GGWCC 4 cut(s) 256, 478, 514, 983
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 5 cut(s) 151, 256, 478, 514, 983
BmiI GGNNCC 4 cut(s) 35, 226, 479, 516
BmrFI CCNGG 3 cut(s) 596, 617, 738
BmsI GCATC 7 cut(s) 43, 175, 270, 404, 433, 778, 850
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 5 cut(s) 336, 481, 518, 595, 615
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 5 cut(s) 244, 337, 391, 616, 830
Bse118I RCCGGY 2 cut(s) 244, 956
Bse1I ACTGG 3 cut(s) 18, 316, 985
Bse21I CCTNAGG 1 cut(s) 266
BseBI CCWGG 3 cut(s) 596, 617, 738
BseDI CCNNGG 5 cut(s) 336, 481, 518, 595, 615
BseGI GGATG 3 cut(s) 261, 793, 841
BseLI CCNNNNNNNGG 5 cut(s) 244, 337, 391, 616, 830
BseMII CTCAG 2 cut(s) 280, 307
BseNI ACTGG 3 cut(s) 18, 316, 985
BseRI GAGGAG 3 cut(s) 589, 771, 892
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 7 cut(s) 90, 105, 224, 873, 916, 949, 1014
Bsh1236I CGCG 1 cut(s) 338
BshFI GGCC 4 cut(s) 5, 153, 315, 834
BshNI GGYRCC 2 cut(s) 33, 224
BshTI ACCGGT 1 cut(s) 244
BsiHKAI GWGCWC 2 cut(s) 294, 609
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 4 cut(s) 245, 824, 835, 957
BslI CCNNNNNNNGG 5 cut(s) 244, 337, 391, 616, 830
BsmAI GTCTC 2 cut(s) 662, 753
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 4 cut(s) 5, 153, 315, 834
Bso31I GGTCTC 1 cut(s) 662
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 38, 294, 609
Bsp143I GATC 2 cut(s) 85, 881
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 8 cut(s) 176, 259, 279, 336, 338, 806, 814, 997
BspANI GGCC 4 cut(s) 5, 153, 315, 834
BspCNI CTCAG 2 cut(s) 279, 306
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 4 cut(s) 35, 226, 479, 516
BspMAI CTGCAG 1 cut(s) 978
BspT107I GGYRCC 2 cut(s) 33, 224
BspTNI GGTCTC 1 cut(s) 662
BsrFI RCCGGY 2 cut(s) 244, 956
BsrI ACTGG 3 cut(s) 18, 316, 985
BssAI RCCGGY 2 cut(s) 244, 956
BssECI CCNNGG 5 cut(s) 336, 481, 518, 595, 615
BssMI GATC 2 cut(s) 85, 881
BssT1I CCWWGG 2 cut(s) 481, 518
Bst2UI CCWGG 3 cut(s) 596, 617, 738
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 115
BstC8I GCNNGC 3 cut(s) 821, 958, 995
BstDEI CTNAG 2 cut(s) 266, 293
BstDSI CCRYGG 2 cut(s) 336, 481
BstENI CCTNNNNNAGG 1 cut(s) 614
BstF5I GGATG 3 cut(s) 261, 793, 841
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 1002
BstKTI GATC 2 cut(s) 88, 884
BstMAI GTCTC 2 cut(s) 662, 753
BstMBI GATC 2 cut(s) 85, 881
BstMWI GCNNNNNNNGC 2 cut(s) 820, 999
BstNI CCWGG 3 cut(s) 596, 617, 738
BstNSI RCATGY 3 cut(s) 725, 752, 766
BstSCI CCNGG 3 cut(s) 594, 615, 736
BstSFI CTRYAG 1 cut(s) 974
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 7 cut(s) 90, 105, 224, 873, 916, 949, 1014
BstXI CCANNNNNNTGG 1 cut(s) 737
Bsu36I CCTNAGG 1 cut(s) 266
BsuRI GGCC 4 cut(s) 5, 153, 315, 834
BtgI CCRYGG 2 cut(s) 336, 481
BtsCI GGATG 3 cut(s) 261, 793, 841
BtsI GCAGTG 2 cut(s) 816, 940
BtsIMutI CAGTG 4 cut(s) 11, 309, 816, 940
Cac8I GCNNGC 3 cut(s) 821, 958, 995
CaiI CAGNNNCTG 1 cut(s) 856
CfoI GCGC 1 cut(s) 1002
Cfr10I RCCGGY 2 cut(s) 244, 956
Cfr13I GGNCC 5 cut(s) 151, 256, 478, 514, 983
Cfr42I CCGCGG 1 cut(s) 339
CseI GACGC 1 cut(s) 994
Csp6I GTAC 1 cut(s) 180
CspAI ACCGGT 1 cut(s) 244
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 266, 293
DpnI GATC 2 cut(s) 87, 883
DpnII GATC 2 cut(s) 85, 881
DraIII CACNNNGTG 1 cut(s) 289
DrdI GACNNNNNNGTC 1 cut(s) 985
DseDI GACNNNNNNGTC 1 cut(s) 985
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 481, 518
Eco31I GGTCTC 1 cut(s) 662
Eco32I GATATC 1 cut(s) 674
Eco47I GGWCC 4 cut(s) 256, 478, 514, 983
Eco81I CCTNAGG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 29
EcoNI CCTNNNNNAGG 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 3 cut(s) 594, 615, 736
EcoRV GATATC 1 cut(s) 674
EcoT14I CCWWGG 2 cut(s) 481, 518
ErhI CCWWGG 2 cut(s) 481, 518
FauI CCCGC 2 cut(s) 169, 807
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 9 cut(s) 79, 119, 213, 807, 862, 905, 938, 998, 1003
FokI GGATG 3 cut(s) 248, 800, 828
Fsp4HI GCNGC 9 cut(s) 79, 119, 213, 807, 862, 905, 938, 998, 1003
FspBI CTAG 5 cut(s) 39, 360, 519, 641, 933
GlaI GCGC 1 cut(s) 1001
GluI GCNGC 9 cut(s) 79, 119, 213, 807, 862, 905, 938, 998, 1003
HaeIII GGCC 4 cut(s) 5, 153, 315, 834
HapII CCGG 4 cut(s) 245, 824, 835, 957
HgaI GACGC 1 cut(s) 994
HhaI GCGC 1 cut(s) 1002
Hin6I GCGC 1 cut(s) 1000
HinP1I GCGC 1 cut(s) 1000
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 5 cut(s) 509, 580, 690, 896, 962
HpaII CCGG 4 cut(s) 245, 824, 835, 957
HphI GGTGA 4 cut(s) 268, 325, 550, 604
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 2 cut(s) 514, 876
Hpy188III TCNNGA 3 cut(s) 543, 584, 669
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 1 cut(s) 1010
HpyAV CCTTC 3 cut(s) 449, 796, 886
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 9 cut(s) 133, 200, 446, 506, 745, 919, 925, 945, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 820, 999
HpyF3I CTNAG 2 cut(s) 266, 293
HspAI GCGC 1 cut(s) 1000
KroI GCCGGC 1 cut(s) 956
KroNI GCCGGC 1 cut(s) 958
Ksp22I TGATCA 1 cut(s) 85
KspI CCGCGG 1 cut(s) 339
Kzo9I GATC 2 cut(s) 85, 881
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 7 cut(s) 90, 105, 224, 873, 916, 949, 1014
LweI GCATC 7 cut(s) 43, 175, 270, 404, 433, 778, 850
MaeI CTAG 5 cut(s) 39, 360, 519, 641, 933
MaeIII GTNAC 4 cut(s) 247, 307, 355, 429
MalI GATC 2 cut(s) 87, 883
MboI GATC 2 cut(s) 85, 881
MboII GAAGA 3 cut(s) 83, 102, 377
MfeI CAATTG 2 cut(s) 141, 447
MhlI GDGCHC 3 cut(s) 38, 294, 609
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 5 cut(s) 141, 399, 447, 462, 538
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 1 cut(s) 956
MmeI TCCRAC 1 cut(s) 854
Mox20I TGGCCA 1 cut(s) 315
MroNI GCCGGC 1 cut(s) 956
MscI TGGCCA 1 cut(s) 315
MseI TTAA 5 cut(s) 380, 471, 525, 537, 684
MslI CAYNNNNRTG 4 cut(s) 51, 128, 338, 797
Msp20I TGGCCA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 4 cut(s) 245, 824, 835, 957
MspR9I CCNGG 3 cut(s) 596, 617, 738
MunI CAATTG 2 cut(s) 141, 447
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 3 cut(s) 596, 617, 738
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 820, 999
NaeI GCCGGC 1 cut(s) 958
NcoI CCATGG 1 cut(s) 481
NdeII GATC 2 cut(s) 85, 881
NgoMIV GCCGGC 1 cut(s) 956
NlaIV GGNNCC 4 cut(s) 35, 226, 479, 516
NmuCI GTSAC 3 cut(s) 307, 355, 429
NspI RCATGY 3 cut(s) 725, 752, 766
OliI CACNNNNGTG 1 cut(s) 338
PciI ACATGT 2 cut(s) 748, 762
PctI GAATGC 1 cut(s) 42
PdiI GCCGGC 1 cut(s) 958
PfeI GAWTC 4 cut(s) 509, 580, 690, 896
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 9 cut(s) 80, 120, 214, 808, 863, 906, 939, 999, 1004
PleI GAGTC 1 cut(s) 956
PpsI GAGTC 1 cut(s) 956
PscI ACATGT 2 cut(s) 748, 762
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 3 cut(s) 594, 615, 736
PspGI CCWGG 3 cut(s) 594, 615, 736
PspN4I GGNNCC 4 cut(s) 35, 226, 479, 516
PspPI GGNCC 5 cut(s) 151, 256, 478, 514, 983
PstI CTGCAG 1 cut(s) 978
PstNI CAGNNNCTG 1 cut(s) 856
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 4 cut(s) 51, 128, 338, 797
SacII CCGCGG 1 cut(s) 339
SaqAI TTAA 5 cut(s) 380, 471, 525, 537, 684
SatI GCNGC 9 cut(s) 79, 119, 213, 807, 862, 905, 938, 998, 1003
Sau3AI GATC 2 cut(s) 85, 881
Sau96I GGNCC 5 cut(s) 151, 256, 478, 514, 983
SchI GAGTC 1 cut(s) 956
ScrFI CCNGG 3 cut(s) 596, 617, 738
SduI GDGCHC 3 cut(s) 38, 294, 609
SfaNI GCATC 7 cut(s) 43, 175, 270, 404, 433, 778, 850
SfcI CTRYAG 1 cut(s) 974
Sfr303I CCGCGG 1 cut(s) 339
SgrBI CCGCGG 1 cut(s) 339
SinI GGWCC 4 cut(s) 256, 478, 514, 983
SmiMI CAYNNNNRTG 4 cut(s) 51, 128, 338, 797
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 5 cut(s) 141, 399, 447, 462, 538
SsiI CCGC 8 cut(s) 176, 259, 279, 336, 338, 806, 814, 997
SspMI CTAG 5 cut(s) 39, 360, 519, 641, 933
StyD4I CCNGG 3 cut(s) 594, 615, 736
StyI CCWWGG 2 cut(s) 481, 518
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 884
TasI AATT 5 cut(s) 141, 399, 447, 462, 538
TauI GCSGC 2 cut(s) 809, 1000
TfiI GAWTC 4 cut(s) 509, 580, 690, 896
Tru1I TTAA 5 cut(s) 380, 471, 525, 537, 684
Tru9I TTAA 5 cut(s) 380, 471, 525, 537, 684
TscAI CASTG 4 cut(s) 18, 316, 816, 947
TseFI GTSAC 3 cut(s) 307, 355, 429
TseI GCWGC 7 cut(s) 78, 118, 212, 861, 904, 937, 1002
Tsp45I GTSAC 3 cut(s) 307, 355, 429
TspDTI ATGAA 3 cut(s) 35, 434, 815
TspGWI ACGGA 4 cut(s) 277, 456, 843, 975
TspRI CASTG 4 cut(s) 18, 316, 816, 947
VpaK11BI GGWCC 4 cut(s) 256, 478, 514, 983
XagI CCTNNNNNAGG 1 cut(s) 614
XapI RAATTY 1 cut(s) 462
XceI RCATGY 3 cut(s) 725, 752, 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmaJI CCTAGG 1 cut(s) 518
XspI CTAG 5 cut(s) 39, 360, 519, 641, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.